CX047536

Overview
NameCX047536
Unique NameCX047536
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length894
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047536 vs. ExPASy Swiss-Prot
Match: STIP_SOYBN (Heat shock protein STI OS=Glycine max GN=STI PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.617e-16
Identity = 53/152 (34.87%), Postives = 78/152 (51.32%), Query Frame = -2
Query:  216 KQLEETRN----LKENNAPKDKAPMKELPEVRPEIXXXXXXXXARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVE 659
            K L E RN     K N A K K  +++     P++         +G+E FKQ+ Y  A   YT+AI  +P DA   SNR+ C+ +LG     L DA+ C  L P + K   R+GA    ++++D+A   + EG+  DP N+EL+   R  VE
Sbjct:  346 KALTENRNPDTLKKLNEAEKAKKELEQQEYFDPKLADEARE---KGNELFKQQKYPEATKHYTEAIKRNPKDAKAYSNRAACYTKLGAMPEGLKDAEKCIELDPTFSKGYTRKGAVQFSMKEYDKALETYREGLKHDPNNQELLDGIRRCVE 494          
BLAST of CX047536 vs. ExPASy Swiss-Prot
Match: STIP1_DICDI (Protein STIP1 homolog OS=Dictyostelium discoideum GN=sti1 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 7.614e-16
Identity = 46/106 (43.40%), Postives = 62/106 (58.49%), Query Frame = -2
Query:  222 RGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREA 539
            +G+ AF  KDY  AV  + QAI+ DPS+  L SNRS   + L + E AL DAK    L+PDW K   RE  AL  L +F+EA  +   G+ +DP N++L  A  +A
Sbjct:   14 QGNAAFSSKDYNSAVKCFDQAIELDPSNHILYSNRSASLLALDKNEDALTDAKKAIELKPDWSKGYLRETNALYKLGRFEEAEKSAEAGLKIDPTNQQLEDALEDA 119          
BLAST of CX047536 vs. ExPASy Swiss-Prot
Match: STI1_SCHPO (Heat shock protein sti1 homolog OS=Schizosaccharomyces pombe GN=sti1 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.779e-15
Identity = 46/111 (41.44%), Postives = 63/111 (56.76%), Query Frame = -2
Query:  207 RGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGR 539
            +G+ AF +KDY  A+D +TQAI  D  +  L SNRS C+        AL DA  C  L+PDW K   R+GAAL  L   D A +A+ EG+  D  N +L+   + +VEA +
Sbjct:    8 KGNAAFSKKDYKTAIDYFTQAIGLDERNHILYSNRSACYASEKDYADALKDATKCTELKPDWAKGWSRKGAALHGLGDLDAARSAYEEGLKHDANNAQLLNGLK-SVEAAQ 117          
BLAST of CX047536 vs. ExPASy Swiss-Prot
Match: TTC28_HUMAN (Tetratricopeptide repeat protein 28 OS=Homo sapiens GN=TTC28 PE=1 SV=4)

HSP 1 Score: 75.0998 bits (183), Expect = 6.033e-13
Identity = 38/106 (35.85%), Postives = 61/106 (57.55%), Query Frame = -2
Query:  222 RGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREA 539
            + ++A    D+  A+  Y +A+  DP +  L SNRS  ++++ Q + AL DA   R L P WPKA +R+G AL+ L +  +A  AF  G+  DP++ +L+    EA
Sbjct:   64 QSNQACHDGDFHTAIVLYNEALAVDPQNCILYSNRSAAYMKIQQYDKALDDAIKARLLNPKWPKAYFRQGVALQYLGRHADALAAFASGLAQDPKSLQLLVGMVEA 169          
BLAST of CX047536 vs. ExPASy Swiss-Prot
Match: SGTB_HUMAN (Small glutamine-rich tetratricopeptide repeat-containing protein beta OS=Homo sapiens GN=SGTB PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.293e-12
Identity = 37/95 (38.95%), Postives = 55/95 (57.89%), Query Frame = -2
Query:  252 GDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPEN 536
            G+   K+++Y  AVD YTQAI+ DP++A    NR+    +LG    A+ D +   A+   + KA  R G AL  L KF+EA  ++ + + LDPEN
Sbjct:   92 GNNHMKEENYAAAVDCYTQAIELDPNNAVYYCNRAAAQSKLGHYTDAIKDCEKAIAIDSKYSKAYGRMGLALTALNKFEEAVTSYQKALDLDPEN 186          
BLAST of CX047536 vs. ExPASy Swiss-Prot
Match: TTC31_HUMAN (Tetratricopeptide repeat protein 31 OS=Homo sapiens GN=TTC31 PE=2 SV=3)

HSP 1 Score: 72.0182 bits (175), Expect = 5.107e-12
Identity = 38/78 (48.72%), Postives = 46/78 (58.97%), Query Frame = -2
Query:  276 YLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYE 509
            Y  AV  +TQA+  +P D  L  NRS C  RLGQ   ALADA+    LRP WP+  +R G AL  L++F EAA  F E
Sbjct:  321 YHEAVVLFTQALKLNPQDHRLFGNRSFCHERLGQPAWALADAQVALTLRPGWPRGLFRLGKALMGLQRFREAAAVFQE 398          
BLAST of CX047536 vs. ExPASy Swiss-Prot
Match: STIP1_MACFA (Stress-induced-phosphoprotein 1 OS=Macaca fascicularis GN=STIP1 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 5.107e-12
Identity = 37/114 (32.46%), Postives = 63/114 (55.26%), Query Frame = -2
Query:  198 RGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFH 539
            +G+E F++ DY  A+  YT+AI  +P DA L SNR+ C+ +L + + AL D + C  L P + K   R+ AAL  ++ + +A + + + + LD   KE    ++  + A    H
Sbjct:  366 KGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSRKEAADGYQRCMMAQYNRH 479          
BLAST of CX047536 vs. ExPASy Swiss-Prot
Match: STIP1_BOVIN (Stress-induced-phosphoprotein 1 OS=Bos taurus GN=STIP1 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 5.107e-12
Identity = 38/114 (33.33%), Postives = 63/114 (55.26%), Query Frame = -2
Query:  198 RGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFH 539
            +G+E F++ DY  A+  YT+AI  +P DA L SNR+ C+ +L + + AL D + C  L P + K   R+ AAL  ++ + +A + + + + LD   KE    ++  V A    H
Sbjct:  366 KGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSNCKEAADGYQRCVMAQYNRH 479          
BLAST of CX047536 vs. ExPASy Swiss-Prot
Match: SGT2_SCHPO (Small glutamine-rich tetratricopeptide repeat-containing protein 2 OS=Schizosaccharomyces pombe GN=sgt2 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.670e-12
Identity = 42/111 (37.84%), Postives = 61/111 (54.95%), Query Frame = -2
Query:  204 GDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRK 536
            G+ A   KDY  A+D YT+AI+ DP+     SNR+  + +LGQ E+A+ DA  C +L P   +A  R G A   L     AA+A+ +G+  DP N+ L    +  +EA  K
Sbjct:   90 GNNAIAAKDYQKALDLYTKAIEIDPTSPVYYSNRAAAYNQLGQFENAVEDALTCLSLDPHHARAFGRLGRAKLSLGDAAAAADAYKKGLDFDPNNEVL----KRGLEAANK 196          
BLAST of CX047536 vs. ExPASy Swiss-Prot
Match: STIP1_HUMAN (Stress-induced-phosphoprotein 1 OS=Homo sapiens GN=STIP1 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.138e-11
Identity = 37/114 (32.46%), Postives = 63/114 (55.26%), Query Frame = -2
Query:  198 RGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFH 539
            +G+E F++ DY  A+  YT+AI  +P DA L SNR+ C+ +L + + AL D + C  L P + K   R+ AAL  ++ + +A + + + + LD   KE    ++  + A    H
Sbjct:  366 KGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYNRH 479          
The following BLAST results are available for this feature:
BLAST of CX047536 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
STIP_SOYBN2.617e-1634.87Heat shock protein STI OS=Glycine max GN=STI PE=2 ... [more]
STIP1_DICDI7.614e-1643.40Protein STIP1 homolog OS=Dictyostelium discoideum ... [more]
STI1_SCHPO3.779e-1541.44Heat shock protein sti1 homolog OS=Schizosaccharom... [more]
TTC28_HUMAN6.033e-1335.85Tetratricopeptide repeat protein 28 OS=Homo sapien... [more]
SGTB_HUMAN2.293e-1238.95Small glutamine-rich tetratricopeptide repeat-cont... [more]
TTC31_HUMAN5.107e-1248.72Tetratricopeptide repeat protein 31 OS=Homo sapien... [more]
STIP1_MACFA5.107e-1232.46Stress-induced-phosphoprotein 1 OS=Macaca fascicul... [more]
STIP1_BOVIN5.107e-1233.33Stress-induced-phosphoprotein 1 OS=Bos taurus GN=S... [more]
SGT2_SCHPO6.670e-1237.84Small glutamine-rich tetratricopeptide repeat-cont... [more]
STIP1_HUMAN1.138e-1132.46Stress-induced-phosphoprotein 1 OS=Homo sapiens GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_14G03_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-14G03-N5-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047536 ID=CX047536; Name=CX047536; organism=Citrus sinensis; type=EST; length=894bp
TTTTTTTTTCAAAACAGCTGTTAATAGCATCTTAAAATATGGGTTCTATC
CATACTCCCACCCGAATCATTTCTTGCGGCATGACTCAAAAATAACAATA
AGCCTGTCGCACCGATAACTCATTAGTGCAAGTGGTTTTTTGGTTTCTTG
TCTCCGTATTTTGGAATTGGAACAAACTATTACTTCTTGTCTGTCCCATG
AAACTTCCTCCCAGCTTCAACGGCCTCCCTAAAAGCAAATACAAGCTCCT
TATTCTCAGGATCAAGCGTCACGCCCTCATAAAAAGCATTGGCTGCCTCA
TCAAATTTCTCCAATAAACGCAATGCTGCACCCTCCCGATAGCAAGCTTT
CGGCCAGTCCGGTCTTAATGCTCTACAAGCCTTTGCATCGGCTAAGGCAT
GCTCTGCTTGTCCAAGACGTATCCAACAAAGGCTTCTGTTGGAAAGTAAT
GTGGCATCGCTGGGGTCGAAATCAATTGCTTGTGTATATGCATCAACAGC
CATAAGATAATCCTTTTGTTTGAAAGCCTCATCTCCTCTTGCTTTTGCTT
CTGCAGCTTTCTTCTTTATTTCAGGCCGCACCTCAGGGAGCTCCTTCATT
GGAGCCTTGTCTTTTGGTGCATTATTTTCCTTCAGGTTTCTTGTTTCTTC
CAATTGTTTCCCCGATTCAGATTGCATGTATTCAAGAATTCCGTCAACCG
TCCATTTGGGAATGGAGGGATCTTCTGATGTCAAGGGAAAAAGGATCTCA
ACAGCCTCACGATTGCCTCTTGCAGCTGCAACTTGTATGGGTTTCTGGCC
ATCCTCATCGGTGACATTGGAATCAGCTCCAGCTTTCAATAAGCATTTTA
TGATTTCTGTACTCCCAATATCAGCAGCGATGTGCAATGGGGTT
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