CX047525

Overview
NameCX047525
Unique NameCX047525
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length654
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX047525 vs. ExPASy Swiss-Prot
Match: RS132_ARATH (40S ribosomal protein S13-2 OS=Arabidopsis thaliana GN=RPS13B PE=2 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 1.949e-51
Identity = 102/103 (99.03%), Postives = 102/103 (99.03%), Query Frame = -1 
Query:  346 QIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 654
            QIGVILRDSHGI QVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct:   49 QIGVILRDSHGIPQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 151
[Close]
BLAST of CX047525 vs. ExPASy Swiss-Prot
Match: RS131_ARATH (40S ribosomal protein S13-1 OS=Arabidopsis thaliana GN=RPS13A PE=2 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 1.949e-51
Identity = 102/103 (99.03%), Postives = 102/103 (99.03%), Query Frame = -1 
Query:  346 QIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 654
            QIGVILRDSHGI QVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct:   49 QIGVILRDSHGIPQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 151
[Close]
BLAST of CX047525 vs. ExPASy Swiss-Prot
Match: RS13_SOYBN (40S ribosomal protein S13 OS=Glycine max GN=RPS13 PE=2 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 4.342e-51
Identity = 101/103 (98.06%), Postives = 102/103 (99.03%), Query Frame = -1 
Query:  346 QIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 654
            QIGVILRDSHGIAQV SVTGSKILRILKAHGLAPEIPEDLYHLIKKAV+IRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct:   49 QIGVILRDSHGIAQVNSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 151
[Close]
BLAST of CX047525 vs. ExPASy Swiss-Prot
Match: RS13_PEA (40S ribosomal protein S13 OS=Pisum sativum GN=RPS13 PE=2 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 1.263e-50
Identity = 101/103 (98.06%), Postives = 102/103 (99.03%), Query Frame = -1 
Query:  346 QIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 654
            QIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAV+IRKHLER RKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct:   49 QIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERFRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 151
[Close]
BLAST of CX047525 vs. ExPASy Swiss-Prot
Match: RS132_ORYSJ (40S ribosomal protein S13-2 OS=Oryza sativa subsp. japonica GN=Os08g0117300 PE=1 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 3.440e-48
Identity = 96/103 (93.20%), Postives = 98/103 (95.15%), Query Frame = -1 
Query:  346 QIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 654
            QIGV+LRD HGI  VKSVTGSKILRILKAHGLAPEIPEDLY LIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYK+TKKLPP WKYESTTASTLVA
Sbjct:   49 QIGVVLRDQHGIPLVKSVTGSKILRILKAHGLAPEIPEDLYFLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKRTKKLPPTWKYESTTASTLVA 151
[Close]
BLAST of CX047525 vs. ExPASy Swiss-Prot
Match: RS131_ORYSJ (40S ribosomal protein S13-1 OS=Oryza sativa subsp. japonica GN=Os08g0117200 PE=2 SV=2)

HSP 1 Score: 191.43 bits (485), Expect = 3.440e-48
Identity = 96/103 (93.20%), Postives = 98/103 (95.15%), Query Frame = -1 
Query:  346 QIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 654
            QIGV+LRD HGI  VKSVTGSKILRILKAHGLAPEIPEDLY LIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYK+TKKLPP WKYESTTASTLVA
Sbjct:   49 QIGVVLRDQHGIPLVKSVTGSKILRILKAHGLAPEIPEDLYFLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKRTKKLPPTWKYESTTASTLVA 151
[Close]
BLAST of CX047525 vs. ExPASy Swiss-Prot
Match: RS13_MAIZE (40S ribosomal protein S13 OS=Zea mays GN=RPS13 PE=2 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 4.493e-48
Identity = 96/103 (93.20%), Postives = 98/103 (95.15%), Query Frame = -1 
Query:  346 QIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 654
            QIGV+LRD HGI  VKSVTGSKILRILKAHGLAPEIPEDLY LIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYK+TKKLPP WKYESTTASTLVA
Sbjct:   49 QIGVLLRDQHGIPLVKSVTGSKILRILKAHGLAPEIPEDLYFLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKRTKKLPPTWKYESTTASTLVA 151
[Close]
BLAST of CX047525 vs. ExPASy Swiss-Prot
Match: RS13_XENLA (40S ribosomal protein S13 OS=Xenopus laevis GN=rps13 PE=3 SV=2)

HSP 1 Score: 176.022 bits (445), Expect = 1.496e-43
Identity = 85/103 (82.52%), Postives = 96/103 (93.20%), Query Frame = -1 
Query:  346 QIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 654
            QIGVILRDSHG+AQV+ VTG+KILRILK+ GLAP++PEDLYHLIKKAVA+RKHLERNRKDKD+KFRLIL+ESRIHRLARYYK  + LPP WKYES+TAS LVA
Sbjct:   49 QIGVILRDSHGVAQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIESRIHRLARYYKTRRVLPPNWKYESSTASALVA 151
[Close]
BLAST of CX047525 vs. ExPASy Swiss-Prot
Match: RS13_RAT (40S ribosomal protein S13 OS=Rattus norvegicus GN=Rps13 PE=2 SV=2)

HSP 1 Score: 176.022 bits (445), Expect = 1.496e-43
Identity = 85/103 (82.52%), Postives = 96/103 (93.20%), Query Frame = -1 
Query:  346 QIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 654
            QIGVILRDSHG+AQV+ VTG+KILRILK+ GLAP++PEDLYHLIKKAVA+RKHLERNRKDKD+KFRLIL+ESRIHRLARYYK  + LPP WKYES+TAS LVA
Sbjct:   49 QIGVILRDSHGVAQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIESRIHRLARYYKTKRVLPPNWKYESSTASALVA 151
[Close]
BLAST of CX047525 vs. ExPASy Swiss-Prot
Match: RS13_MOUSE (40S ribosomal protein S13 OS=Mus musculus GN=Rps13 PE=1 SV=2)

HSP 1 Score: 176.022 bits (445), Expect = 1.496e-43
Identity = 85/103 (82.52%), Postives = 96/103 (93.20%), Query Frame = -1 
Query:  346 QIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 654
            QIGVILRDSHG+AQV+ VTG+KILRILK+ GLAP++PEDLYHLIKKAVA+RKHLERNRKDKD+KFRLIL+ESRIHRLARYYK  + LPP WKYES+TAS LVA
Sbjct:   49 QIGVILRDSHGVAQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIESRIHRLARYYKTKRVLPPNWKYESSTASALVA 151
The following BLAST results are available for this feature:
BLAST of CX047525 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
RS132_ARATH1.949e-5199.0340S ribosomal protein S13-2 OS=Arabidopsis thalian... [more]
RS131_ARATH1.949e-5199.0340S ribosomal protein S13-1 OS=Arabidopsis thalian... [more]
RS13_SOYBN4.342e-5198.0640S ribosomal protein S13 OS=Glycine max GN=RPS13 ... [more]
RS13_PEA1.263e-5098.0640S ribosomal protein S13 OS=Pisum sativum GN=RPS1... [more]
RS132_ORYSJ3.440e-4893.2040S ribosomal protein S13-2 OS=Oryza sativa subsp.... [more]
RS131_ORYSJ3.440e-4893.2040S ribosomal protein S13-1 OS=Oryza sativa subsp.... [more]
RS13_MAIZE4.493e-4893.2040S ribosomal protein S13 OS=Zea mays GN=RPS13 PE=... [more]
RS13_XENLA1.496e-4382.5240S ribosomal protein S13 OS=Xenopus laevis GN=rps... [more]
RS13_RAT1.496e-4382.5240S ribosomal protein S13 OS=Rattus norvegicus GN=... [more]
RS13_MOUSE1.496e-4382.5240S ribosomal protein S13 OS=Mus musculus GN=Rps13... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS09_14F10_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-14F10-L19-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047525 ID=CX047525; Name=CX047525; organism=Citrus sinensis; type=EST; length=654bp
TTTTTTTTTTTTTTTTTAAAAAATCCAACCAACAGAGAAAGGTCATGCAA
AACCAAACCCTGTCAATGGCGTCCATAGAAATTCCCACACTAGAACGAGA
ACATTATGCATCTAAGAATCATAATTTCAAAAGTACCAAAAATAGAAACA
AAAGGATCCAGAGAGAACAAATGATGAACTAGTCCAATACATCAAACGTC
ATTTCCGCCCTAATCGATTCAGCTCACTCTTCTCGCATAAAGTCGTTATA
AAAGGAATAACAATAAATAAGGAAAAAACTTGAGGCCACTTGTCAAAGAT
ACGATCCTGGAAGTTCCAAATGTGGTACCAAATATATCTCACCTATGCCA
CGAGAGTGCTGGCAGTGGTTGACTCATATTTCCATACAGGTGGAAGCTTC
TTTGTCTTCTTGTAGTAGCGAGCCAGTCGGTGGATTCTGCTCTCAACCAA
GATCAACCTAAACTTGGAATCTTTATCCTTCCTGTTCCTCTCTAGATGCT
TCCTAATAGCGACTGCTTTCTTGATGAGGTGGTACAAGTCCTCAGGAATT
TCAGGAGCAAGCCCATGAGCCTTAAGTATCCTCAAAATTTTGCTCCCAGT
AACACTCTTCACTTGAGCAATCCCATGAGAATCACGAAGAATAACACCAA
TTTG
back to top