CX047524

Overview
NameCX047524
Unique NameCX047524
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length885
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047524 vs. ExPASy Swiss-Prot
Match: RB11D_LOTJA (Ras-related protein Rab11D OS=Lotus japonicus GN=RAB11D PE=2 SV=1)

HSP 1 Score: 380.948 bits (977), Expect = 5.083e-105
Identity = 187/217 (86.18%), Postives = 206/217 (94.93%), Query Frame = -1
Query:  199 MAGYKPDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVEAGSNGTASTLPSKGETINVKDDSSVLKRIGCCS 849
            M GY+ D+EYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFAT++L +D KVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTR ATF+N  RWL+ELR+HTDPNI+VMLIGNK+DLRHLVAV TEDGK+FAE+ESLYFMETSAL+ATNVENAFTEVLTQIY+IVSKRAVEAG +G++S LPSKG+TINVK+DSSVLKR GCCS
Sbjct:    1 MGGYRTDDEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATKTLNVDAKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRRATFENAARWLKELRDHTDPNIVVMLIGNKSDLRHLVAVPTEDGKSFAERESLYFMETSALEATNVENAFTEVLTQIYRIVSKRAVEAGDSGSSSGLPSKGQTINVKEDSSVLKRFGCCS 217          
BLAST of CX047524 vs. ExPASy Swiss-Prot
Match: RB11E_LOTJA (Ras-related protein Rab11E OS=Lotus japonicus GN=RAB11E PE=2 SV=1)

HSP 1 Score: 371.703 bits (953), Expect = 3.084e-102
Identity = 183/218 (83.94%), Postives = 201/218 (92.20%), Query Frame = -1
Query:  196 MAGYKPDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVEAGSNGTASTLPSKGETINVKDDSSVLKRIGCCSN 849
            MAGYK D+EYDYLFKLVLIGDSGVGKSNLLSRFT+NEFNLESKSTIGVEFAT+SL ID KV+KAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTR  TF+  GRWL+ELR+HTDPNI+VMLIGNK+DLRHLV VSTEDGKAFAE+ESLYFMETSAL+ATNVENAF+EVLTQIY+IVSKRAVEAG   + S +PS+G+TINV +DSSVL R  CCSN
Sbjct:    1 MAGYKADDEYDYLFKLVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSLNIDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRSTTFETAGRWLKELRDHTDPNIVVMLIGNKSDLRHLVTVSTEDGKAFAEKESLYFMETSALEATNVENAFSEVLTQIYRIVSKRAVEAGDRPSTSVVPSQGQTINVNEDSSVLNRYRCCSN 218          
BLAST of CX047524 vs. ExPASy Swiss-Prot
Match: RAA1A_ARATH (Ras-related protein RABA1a OS=Arabidopsis thaliana GN=RABA1A PE=2 SV=1)

HSP 1 Score: 371.703 bits (953), Expect = 3.084e-102
Identity = 184/218 (84.40%), Postives = 202/218 (92.66%), Query Frame = -1
Query:  196 MAGYKPDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVEAGSNGTASTLPSKGETINVKDDSSVLKRIGCCSN 849
            MAGY+ DEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFAT++ +++ KVVKAQIWDTAGQERYRAITSAYYRGAVGALL+YDVTRHATF+N  RWLRELR HTDPNI+VMLIGNK DLRHLVAV TE+ KAFAE+ESLYFMETSALDATNVENAFTEVLTQI+KIVSKR+V+ G  G ++ LP KGETINVK+D SVLKR+GCCSN
Sbjct:    1 MAGYRADEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATKTTKVEGKVVKAQIWDTAGQERYRAITSAYYRGAVGALLIYDVTRHATFENAARWLRELRGHTDPNIVVMLIGNKCDLRHLVAVKTEEAKAFAERESLYFMETSALDATNVENAFTEVLTQIHKIVSKRSVDGG--GESADLPGKGETINVKEDGSVLKRMGCCSN 216          
BLAST of CX047524 vs. ExPASy Swiss-Prot
Match: YPT3_NICPL (Ras-related protein YPT3 OS=Nicotiana plumbaginifolia GN=YPT3 PE=2 SV=1)

HSP 1 Score: 367.851 bits (943), Expect = 4.453e-101
Identity = 178/218 (81.65%), Postives = 199/218 (91.28%), Query Frame = -1
Query:  196 MAGYKPDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVEAGSNGTASTLPSKGETINVKDDSSVLKRIGCCSN 849
            MAGY+ D+EYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFAT+SL IDNKV+KAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRH T++NV RWL+ELR+HTDPNI+VMLIGNK+DLRHLVAVST++ K  AE+E LYFMETSAL+ATNVENAFTE LTQIY+IVSK+AVEAG  G  S+ P KGETIN+KD+ S  K+ GCCS+
Sbjct:    1 MAGYRADDEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATKSLNIDNKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTYENVTRWLKELRDHTDPNIVVMLIGNKSDLRHLVAVSTDEAKGLAEREGLYFMETSALEATNVENAFTEALTQIYRIVSKKAVEAGDEGATSSAPPKGETINIKDEGSSWKKFGCCSS 218          
BLAST of CX047524 vs. ExPASy Swiss-Prot
Match: RIC2_ORYSJ (Ras-related protein RIC2 OS=Oryza sativa subsp. japonica GN=RIC2 PE=2 SV=2)

HSP 1 Score: 354.755 bits (909), Expect = 3.901e-97
Identity = 173/216 (80.09%), Postives = 201/216 (93.06%), Query Frame = -1
Query:  199 AGYKPDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVEAGSNGTASTLPSKGETINVKDDSSVLKRIGCCS 846
            AGY+ +++YDYLFK+VLIGDSGVGKSNLLSRFT+NEF+LESKSTIGVEFATRSL++D KVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRH+TF+NV RWL+ELR+HTDPNI+VML+GNK+DLRHLVAV T++GKAFAE+ESLYFMETSAL++TNVENAF EVLTQIY+IVSKR+VEAG +  A + P KGE IN+KDD S +K+ GCCS
Sbjct:    3 AGYRAEDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLQVDGKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLKELRDHTDPNIVVMLVGNKSDLRHLVAVQTDEGKAFAERESLYFMETSALESTNVENAFAEVLTQIYRIVSKRSVEAGDD--AGSGPGKGEKINIKDDVSAVKKGGCCS 216          
BLAST of CX047524 vs. ExPASy Swiss-Prot
Match: RAA1B_ARATH (Ras-related protein RABA1b OS=Arabidopsis thaliana GN=RABA1B PE=2 SV=1)

HSP 1 Score: 351.673 bits (901), Expect = 3.303e-96
Identity = 173/218 (79.36%), Postives = 198/218 (90.83%), Query Frame = -1
Query:  196 MAGYKPDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVEAGSNGTASTLPSKGETINVKDDSSVLKRIGCCSN 849
            MAGY+ +++YDYLFK+VLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATR+L++D KVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTR ATF+NV RWL+EL+ HTDPNI+VML+GNK+DLRHL+AV TEDGK++AEQESL FMETSAL+ATNVE+AF EVLTQIY+I SK+ VEAG +G AS    KGE I VK+D S LK++GCCSN
Sbjct:    1 MAGYRVEDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRTLKVDGKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRRATFENVDRWLKELKNHTDPNIVVMLVGNKSDLRHLLAVPTEDGKSYAEQESLCFMETSALEATNVEDAFAEVLTQIYRITSKKQVEAGEDGNASV--PKGEKIEVKNDVSALKKLGCCSN 216          
BLAST of CX047524 vs. ExPASy Swiss-Prot
Match: RAA1C_ARATH (Ras-related protein RABA1c OS=Arabidopsis thaliana GN=RABA1C PE=1 SV=1)

HSP 1 Score: 348.206 bits (892), Expect = 3.652e-95
Identity = 171/218 (78.44%), Postives = 198/218 (90.83%), Query Frame = -1
Query:  196 MAGYKPDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVEAGSNGTASTLPSKGETINVKDDSSVLKRIGCCSN 849
            MAGY+ D+EYDYLFK+VLIGDSGVGKSNLLSRFTKNEF+LESKSTIGVEFATRSL +D+KV+KAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRH+TF+NV  WL+ELR HTDPNI+VML+GNK+DLRHLVAV TED K+FAE+ESLYFMETSAL+ATNVENAF EVLTQI+ IVSK+A+EA S   ++ +PSKG+ I++  D S +K+ GCCSN
Sbjct:    1 MAGYRADDEYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSLNVDDKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVETWLKELRNHTDPNIVVMLVGNKSDLRHLVAVQTEDAKSFAEKESLYFMETSALEATNVENAFAEVLTQIHHIVSKKAMEAASE--SANVPSKGDKIDIGKDVSAVKKGGCCSN 216          
BLAST of CX047524 vs. ExPASy Swiss-Prot
Match: RB11B_TOBAC (Ras-related protein Rab11B OS=Nicotiana tabacum GN=RAB11B PE=2 SV=1)

HSP 1 Score: 335.109 bits (858), Expect = 3.199e-91
Identity = 163/217 (75.12%), Postives = 197/217 (90.78%), Query Frame = -1
Query:  196 GYKPDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVEAGSNGTASTLPSKGETINV-KDDSSVLKRIGCCSN 843
            GY+ +++YDYLFKLVLIGDSGVGKSNLLSRF++NEFNLESKSTIGVEFATRS+R+D+K+VKAQIWDTAGQERYRAITSAYYRGAVGAL+VYD+TRH TF+NV RWL+ELR+HTD NI++ML+GNK DLRHL AVSTED KAFAE+E+ +FMETSAL++ NVENAFTEVLT+IYK+V ++A+E G +  A  LP KG+TINV KDD S +K++GCCS+
Sbjct:    4 GYRAEDDYDYLFKLVLIGDSGVGKSNLLSRFSRNEFNLESKSTIGVEFATRSIRVDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALVVYDITRHVTFENVERWLKELRDHTDQNIVIMLVGNKADLRHLRAVSTEDAKAFAERENTFFMETSALESLNVENAFTEVLTEIYKVVCRKALEVGDDPAA--LP-KGQTINVGKDDVSAVKKVGCCSS 217          
BLAST of CX047524 vs. ExPASy Swiss-Prot
Match: RB11C_LOTJA (Ras-related protein Rab11C OS=Lotus japonicus GN=RAB11C PE=2 SV=1)

HSP 1 Score: 295.434 bits (755), Expect = 2.809e-79
Identity = 145/214 (67.76%), Postives = 176/214 (82.24%), Query Frame = -1
Query:  199 YKPDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVEAGSNGTASTLPSKGETINVKDDSSVLKRIGCCS 840
            ++ D EYDYLFK+VLIGDSGVGKSN+LSRFT+NEF LESKSTIGVEFATR+L+++ K VKAQIWDTAGQERYRAITSAYYRGAVGALLVYD+T+  TF NV RWLRELR+H D NI++M+ GNK+DL HL AVS +DG A +E+E L F+ETSAL+ATN+E AF  +LT+IY IVSK+A+ A      +++P +G TINV D S   K+ GCCS
Sbjct:    3 HRVDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRAVSEDDGGALSEKEGLSFLETSALEATNIEKAFQTILTEIYHIVSKKALAAQEATAGASVPGQGTTINVADTSGNTKK-GCCS 215          
BLAST of CX047524 vs. ExPASy Swiss-Prot
Match: RB2BV_BETVU (Ras-related protein Rab2BV OS=Beta vulgaris GN=RAB2BV PE=2 SV=1)

HSP 1 Score: 292.738 bits (748), Expect = 1.821e-78
Identity = 146/211 (69.19%), Postives = 175/211 (82.94%), Query Frame = -1
Query:  199 DEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVEAGSNGTASTLPSKGETINVKDDSSVLKRIGCCS 831
            D EYDYLFK+VLIGDSGVGKSN+LSRFT+NEF LESKSTIGVEFATR+L+++ K VKAQIWDTAGQERYRAITSAYYRGAVGALLVYD+T+  TF NV RWLRELR+H D NI++M+ GNK+DL+HL AVS EDG+A AE+E L F+ETSAL+A N+E AF  +LT+IY I+SK+A+ A     +S LP +G TINV  D+S  +R  CCS
Sbjct:    6 DHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLKHLRAVSEEDGQALAEKEGLSFLETSALEAVNIEKAFQTILTEIYHIISKKALAA--QEASSNLPGQGTTINVA-DASANQRRSCCS 213          
The following BLAST results are available for this feature:
BLAST of CX047524 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RB11D_LOTJA5.083e-10586.18Ras-related protein Rab11D OS=Lotus japonicus GN=R... [more]
RB11E_LOTJA3.084e-10283.94Ras-related protein Rab11E OS=Lotus japonicus GN=R... [more]
RAA1A_ARATH3.084e-10284.40Ras-related protein RABA1a OS=Arabidopsis thaliana... [more]
YPT3_NICPL4.453e-10181.65Ras-related protein YPT3 OS=Nicotiana plumbaginifo... [more]
RIC2_ORYSJ3.901e-9780.09Ras-related protein RIC2 OS=Oryza sativa subsp. ja... [more]
RAA1B_ARATH3.303e-9679.36Ras-related protein RABA1b OS=Arabidopsis thaliana... [more]
RAA1C_ARATH3.652e-9578.44Ras-related protein RABA1c OS=Arabidopsis thaliana... [more]
RB11B_TOBAC3.199e-9175.12Ras-related protein Rab11B OS=Nicotiana tabacum GN... [more]
RB11C_LOTJA2.809e-7967.76Ras-related protein Rab11C OS=Lotus japonicus GN=R... [more]
RB2BV_BETVU1.821e-7869.19Ras-related protein Rab2BV OS=Beta vulgaris GN=RAB... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_14F09_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-14F09-L17-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047524 ID=CX047524; Name=CX047524; organism=Citrus sinensis; type=EST; length=885bp
TTCAGGTAATCAAATGAATTACACAAATGTTGGTTTTATTACAGACAATC
TAGAGTTCTTTGAGAGAGGCCTTTTAGGAAAAATTCAAAACAGTTTACCA
GACGGTAGTTTTTCATTTTACACAAAGATTACTTTGATCATGTACAAGTA
AATTGCCCAATGCTGTAAAATCTGGTAACCGAATATATCTCCCTAGTTTG
AGCAGCATCCAATTCTCTTTAGAACGGATGAATCGTCTTTGACATTTATC
GTCTCTCCTTTAGATGGAAGTGTGGAAGCAGTTCCATTGCTGCCTGCTTC
AACTGCTCTCTTGCTCACGATCTTGTATATCTGAGTAAGAACCTCAGTAA
AAGCATTTTCCACATTGGTTGCATCCAATGCGGAAGTCTCCATGAAATAG
AGAGACTCCTGCTCAGCAAAAGCTTTCCCATCCTCAGTTGAGACAGCCAC
AAGGTGTCGAAGATCTGTCTTATTGCCAATGAGCATGACAATAATGTTCG
GATCTGTGTGCTCTCTTAACTCCCTCAACCACCTTCCAACATTCTGAAAT
GTAGCATGTCGTGTTACATCGTATACAAGCAAAGCACCAACGGCACCCCG
GTAGTAAGCACTTGTAATTGCACGGTACCTTTCTTGGCCAGCAGTGTCCC
AAATTTGAGCCTTGACAACCTTGTTATCAATCCTCAAACTCCTGGTAGCG
AACTCAACACCAATAGTAGACTTTGATTCCAAATTAAACTCGTTTTTTGT
AAACCTCGAAAGCAAGTTGGATTTACCAACGCCTGAGTCCCCAATCAAAA
CCAACTTGAAAAGGTAATCATACTCCTCATCAGGCTTGTAACCCGCCATT
TATATAGGTGTATGTGTCACTGTTCACTTGTACCT
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