CX047515

Overview
NameCX047515
Unique NameCX047515
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length839
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047515 vs. ExPASy Swiss-Prot
Match: PP166_ARATH (Pentatricopeptide repeat-containing protein At2g20710, mitochondrial OS=Arabidopsis thaliana GN=At2g20710 PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.453e-29
Identity = 64/163 (39.26%), Postives = 98/163 (60.12%), Query Frame = -2
Query:  350 DDV*RIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLINHEKLKGREIHVKSWYYLATGYRQSNQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTD 838
            ++V R+W LYK+     N GY +VIS+LLK+DD+E  EKI EEWE+    +D RIP+ LI  YC+ G++EKAE ++N    K R     +W  LA GY+ + ++ KAVE  K+ +   +    W+P    L +C+DY + + D+ G    + LL+++G I  D
Sbjct:  298 EEVYRLWSLYKELDGFYNTGYISVISALLKMDDIEEVEKIMEEWEAGHSLFDIRIPHLLITGYCKKGMMEKAEEVVNILVQKWRVEDTSTWERLALGYKMAGKMEKAVEKWKRAIEVSKP--GWRPHQVVLMSCVDYLEGQRDMEGLRKILRLLSERGHISYD 458          
BLAST of CX047515 vs. ExPASy Swiss-Prot
Match: PPR86_ARATH (Pentatricopeptide repeat-containing protein At1g60770 OS=Arabidopsis thaliana GN=At1g60770 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 4.480e-23
Identity = 67/197 (34.01%), Postives = 107/197 (54.31%), Query Frame = -2
Query:  257 DV*RIWELYKKAV-KVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLINHEKLKGREIHVKSWYYLATGYRQSNQIHKAVEAMKKVLAAYQ-TLVKWKPSVESLAACLDYFKDEGDIGGAENFIELL-NDKGFIPTDLQDKLLDN-VRNGKSNLETLRELYGNSLAGNE 835
            +V RIW   + A+ K  N  Y N+I  L+KL+DL  AE +F+EW++    YD RI N LI  Y + GL++KA  L      +G +++ K+W      Y +S  + +A+E M K ++  +    KW PS E++ A + YF+ + D+ GAEN +E+L N    I  ++ + L+      GKS+    R L   ++  NE
Sbjct:  282 EVYRIWRSLRLAIPKTSNVAYLNMIQVLVKLNDLPGAETLFKEWQANCSTYDIRIVNVLIGAYAQEGLIQKANELKEKAPRRGGKLNAKTWEIFMDYYVKSGDMARALECMSKAVSIGKGDGGKWLPSPETVRALMSYFEQKKDVNGAENLLEILKNGTDNIGAEIFEPLIRTYAAAGKSHPAMRRRLKMENVEVNE 478          
BLAST of CX047515 vs. ExPASy Swiss-Prot
Match: PPR3_ARATH (Pentatricopeptide repeat-containing protein At1g02150 OS=Arabidopsis thaliana GN=At1g02150 PE=2 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 4.954e-22
Identity = 57/164 (34.76%), Postives = 89/164 (54.27%), Query Frame = -2
Query:  338 RIWELYKKAVKVLNN-GYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLINHEKLKGREIHVKSWYYLATGYRQSNQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDK 826
            R+W +YK  V  + N GY  ++SSL+++ D+E AEK++EEW      YD RIPN L++ Y +N  LE AE L +H    G +    +W  LA G+ +   I +A+  ++   +A +    W+P V  L+      ++E D+   E  +ELL   G    DL+DK
Sbjct:  331 RVWHVYKSVVPSIPNLGYHALVSSLVRMGDIEGAEKVYEEWLPVKSSYDPRIPNLLMNAYVKNDQLETAEGLFDHMVEMGGKPSSSTWEILAVGHTRKRCISEALTCLRNAFSA-EGSSNWRPKVLMLSGFFKLCEEESDVTSKEAVLELLRQSG----DLEDK 489          
BLAST of CX047515 vs. ExPASy Swiss-Prot
Match: PP334_ARATH (Pentatricopeptide repeat-containing protein At4g21705, mitochondrial OS=Arabidopsis thaliana GN=At4g21705 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.882e-21
Identity = 57/183 (31.15%), Postives = 95/183 (51.91%), Query Frame = -2
Query:  293 DV*RIWELYKKAVKV-LNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLINHEKLKGREIHVKSWYYLATGYRQSNQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLLD-NVRNGKSNLETL 835
            +V R+W+L K   K  +N  Y  V+ SL+K+D L  AE++  EW+S   CYD R+PN +I  Y    + EKAE ++     +G+    +SW  +AT Y +   +  A + MK  L       KW+P +  + + L +  DEG +   E+F+  L +   +   +   L+  ++R G  N++TL
Sbjct:  285 EVLRLWDLEKDVCKRRINQDYLTVLQSLVKIDALVEAEEVLTEWKSSGNCYDFRVPNTVIRGYIGKSMEEKAEAMLEDLARRGKATTPESWELVATAYAEKGTLENAFKCMKTALGVEVGSRKWRPGLTLVTSVLSWVGDEGSLKEVESFVASLRNCIGVNKQMYHALVKADIREGGRNIDTL 467          
BLAST of CX047515 vs. ExPASy Swiss-Prot
Match: PP400_ARATH (Pentatricopeptide repeat-containing protein At5g27460 OS=Arabidopsis thaliana GN=At5g27460 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.301e-19
Identity = 58/170 (34.12%), Postives = 89/170 (52.35%), Query Frame = -2
Query:  332 DDV*RIWELYKKAV-KVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLINHEKLKGREIHVKSWYYLATGYRQSNQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLL 838
            + V R+WE+ K    ++    Y  V+SSL+K  DLE AE++F EWE+Q   YD R+ N L+  Y RNG + KAE+L      +G   + K+W  L  G+ +   + KA++AM +V    +    W+PS   + A  +YF+ E  I  A  ++  L+  G     L   LL
Sbjct:  301 EGVVRLWEVSKSVCGRISCVNYICVLSSLVKTGDLEEAERVFSEWEAQCFNYDVRVSNVLLGAYVRNGEIRKAESLHGCVLERGGTPNYKTWEILMEGWVKCENMEKAIDAMHQVFVLMRR-CHWRPSHNIVMAIAEYFEKEEKIEEATAYVRDLHRLGLASLPLYRLLL 469          
BLAST of CX047515 vs. ExPASy Swiss-Prot
Match: PPR61_ARATH (Putative pentatricopeptide repeat-containing protein At1g28020 OS=Arabidopsis thaliana GN=At1g28020 PE=3 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 1.000e-14
Identity = 41/88 (46.59%), Postives = 58/88 (65.91%), Query Frame = -2
Query:  578 DDV*RIWELYKKAVKVL-NNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLINHEKLKGREIH 838
            ++V R+W+LYK  +    NNGYR VI SLLK+DD+  AE+I++ WES  L +D RIP  L   Y   G+ EKAE L+N + +K R ++
Sbjct:  297 EEVLRVWKLYKSKIGERDNNGYRTVIRSLLKVDDIVGAEEIYKVWESLPLEFDHRIPTMLASGYRDRGMTEKAEKLMNSKTIKDRRMN 384          
BLAST of CX047515 vs. ExPASy Swiss-Prot
Match: PP302_ARATH (Pentatricopeptide repeat-containing protein At4g02820, mitochondrial OS=Arabidopsis thaliana GN=At4g02820 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 8.469e-14
Identity = 46/170 (27.06%), Postives = 82/170 (48.24%), Query Frame = -2
Query:  332 DDV*RIWELYKKAVKVLNNG-YRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLINHEKLKGREIHVKSWYYLATGYRQSNQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLL 838
            D V   W+  K + K +N+  Y ++IS+++KL + E A+ +++EWES +   D RIPN ++  Y     +   E        KG      +W  L   Y +   + K ++   K   A  ++ KW  +V  +       +++G++ GAE  + LL   G++ T L + LL
Sbjct:  318 DGVNLTWKKVKSSFKKMNDAEYLSMISAVVKLGEFEQAKGLYDEWESVSGTGDARIPNLILAEYMNRDEVLLGEKFYERIVEKGINPSYSTWEILTWAYLKRKDMEKVLDCFGK---AIDSVKKWTVNVRLVKGACKELEEQGNVKGAEKLMTLLQKAGYVNTQLYNSLL 484          
BLAST of CX047515 vs. ExPASy Swiss-Prot
Match: PPR4_ARATH (Pentatricopeptide repeat-containing protein At1g02370, mitochondrial OS=Arabidopsis thaliana GN=At1g02370 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.887e-13
Identity = 51/198 (25.76%), Postives = 102/198 (51.52%), Query Frame = -2
Query:  251 DV*RIWELYKKAVKVLNN-GYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLINHEKLKGREIHVKSWYYLATGYRQSNQIHKAVEAMKKVLA-AYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLLDNVRNGKSNLETLRE-LYGNSLAGNEEI 835
            +V R+WE  KKA   +NN  Y  ++ ++ KL DL+  +KIF EWES+   YD R+ N  I+ Y +  + E+AE +++    K +    K+   L     ++++   A++ ++  ++ + +   +W  S E ++    +F+   D+ GAE+F ++L++   + ++    L+      +     +RE L    +  +EEI
Sbjct:  331 EVYRVWESLKKARPEVNNLSYLVMLQAMSKLGDLDGIKKIFTEWESKCWAYDMRLANIAINTYLKGNMYEEAEKILDGAMKKSKGPFSKARQLLMIHLLENDKADLAMKHLEAAVSDSAENKDEWGWSSELVSLFFLHFEKAKDVDGAEDFCKILSNWKPLDSETMTFLIKTYAAAEKTSPDMRERLSQQQIEVSEEI 528          
BLAST of CX047515 vs. ExPASy Swiss-Prot
Match: PP300_ARATH (Pentatricopeptide repeat-containing protein At4g01990, mitochondrial OS=Arabidopsis thaliana GN=At4g01990 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 9.364e-13
Identity = 46/154 (29.87%), Postives = 78/154 (50.65%), Query Frame = -2
Query:  377 DV*RIWELYKKAVKVLNNG-YRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLINHEKLKGREIHVKSWYYLATGYRQSNQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELL 835
            +V R+W+L KK    +NN  Y  ++ +L KLDD++  +K+F EWES    YD R+ N  I  Y +  + E+AE + N    K +    K+   L     +++Q   A++  +   A       W  S E +++   +F++  D+ GAE F + L
Sbjct:  299 EVYRVWDLLKKRYPNVNNSSYLTMLRALSKLDDIDGVKKVFAEWESTCWTYDMRMANVAISSYLKQNMYEEAEAVFNGAMKKCKGQFSKARQLLMMHLLKNDQADLALKHFE--AAVLDQDKNWTWSSELISSFFLHFEEAKDVDGAEEFCKTL 450          
The following BLAST results are available for this feature:
BLAST of CX047515 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
PP166_ARATH2.453e-2939.26Pentatricopeptide repeat-containing protein At2g20... [more]
PPR86_ARATH4.480e-2334.01Pentatricopeptide repeat-containing protein At1g60... [more]
PPR3_ARATH4.954e-2234.76Pentatricopeptide repeat-containing protein At1g02... [more]
PP334_ARATH1.882e-2131.15Pentatricopeptide repeat-containing protein At4g21... [more]
PP400_ARATH2.301e-1934.12Pentatricopeptide repeat-containing protein At5g27... [more]
PPR61_ARATH1.000e-1446.59Putative pentatricopeptide repeat-containing prote... [more]
PP302_ARATH8.469e-1427.06Pentatricopeptide repeat-containing protein At4g02... [more]
PPR4_ARATH1.887e-1325.76Pentatricopeptide repeat-containing protein At1g02... [more]
PP300_ARATH9.364e-1329.87Pentatricopeptide repeat-containing protein At4g01... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS09_14F05_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-14F05-L9-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047515 ID=CX047515; Name=CX047515; organism=Citrus sinensis; type=EST; length=839bp
TTTTGGAAGAAACATAAACATACTTCCTTCATTAACCATCTAAGATGATG
GATTCAGAAGTGGCTTCATCGCCATTATCCCAAAATGGACATGAAAATAT
CTCTTACAATCACCAAATAAACCTTCATGCTCATTTTGCTTCTACTACCT
AATGCTAGGTTATGGGAAAGTTAGAGAGGTCTTCGGAAATCATGTTTCAA
TGTACTTTCTCTTCTATCAAATCACTGGTATCACCCTCTGGACCTGAAAG
TATTTCTTCATTTCCAGCCAAAGAATTACCATACAACTCCCTGAGAGTTT
CCAAGTTTGATTTTCCATTTCGAACGTTATCCAATAATTTGTCTTGAAGA
TCCGTGGGGATAAAACCTTTATCATTGAGGAGTTCTATGAAATTCTCTGC
TCCACCAATATCTCCTTCATCTTTAAAGTAATCAAGACATGCAGCCAAGC
TTTCCACACTTGGCTTCCACTTGACCAAAGTTTGATAAGCTGCTAATACT
TTCTTCATTGCTTCAACTGCTTTATGAATTTGATTACTCTGCCGATACCC
TGTAGCTAAATAGTACCATGACTTCACATGAATCTCCCTTCCCTTCAATT
TCTCATGGTTTATAAGATTTTCAGCCTTCTCCAAAAGCCCATTTCTGCAG
TACACATCAATAAGGAAGTTTGGTATCCGGGTATCATAGCATAAAGCCTG
GGATTCCCACTCCTCAAAAATTTTCTCAGCGCTTTCTAGGTCATCAAGTT
TCAGCAGGGAAGATATGACATTTCTATAGCCATTGTTGAGAACCTTCACT
GCTTTCTTGTACAGTTCCCAAATTCTTTAGACATCATCT
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