CX047512

Overview
NameCX047512
Unique NameCX047512
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length880
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047512 vs. ExPASy Swiss-Prot
Match: VPS16_DICDI (Vacuolar protein sorting-associated protein 16 homolog OS=Dictyostelium discoideum GN=vps16 PE=3 SV=2)

HSP 1 Score: 124.79 bits (312), Expect = 6.493e-28
Identity = 64/151 (42.38%), Postives = 93/151 (61.59%), Query Frame = -1
Query:  371 RIKRIEKA--HSLFSETKEHTFESKAAEEHAKLLRIQHELEVSTKQAIFVDSSISDTIRTCIVLGNHRAAMKVKTEFKVSEKRWYWLKVFALATKRDWDALERFSKEKRPPIGYRPFVEACVDADEKGEALKYIPKLVDPRERAEAYARIG 817
            RIK   K+  H   S+ K+    SK  ++  KL  +Q ELE + +   FV  SI+DTI   I +   + A  +++EFKV +KR++W+K+ AL+   DW+ L +FSKEK+ PIGY PFVE C+D   + EALKYIPK+ D   + + Y +IG
Sbjct:  639 RIKAYNKSIEHYHHSKDKDDQATSKFIDDQIKLEMLQKELETNLQDESFVGISINDTIYKLITMNQPKKAQSIRSEFKVPDKRFWWIKIKALSIMNDWEELMKFSKEKKSPIGYEPFVEVCLDQKNQIEALKYIPKITDILPKIQFYIQIG 789          
BLAST of CX047512 vs. ExPASy Swiss-Prot
Match: VPS16_MOUSE (Vacuolar protein sorting-associated protein 16 homolog OS=Mus musculus GN=Vps16 PE=1 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 2.161e-23
Identity = 59/149 (39.60%), Postives = 90/149 (60.40%), Query Frame = -1
Query:  371 RIKRIEKAHSLFSETKEHTFESKAAEEHAKLLRIQHELEVSTKQAIFVDSSISDTIRTCIVLGNHRAAMKVKTEFKVSEKRWYWLKVFALATKRDWDALERFSKEKRPPIGYRPFVEACVDADEKGEALKYIPKLVDPRERAEAYARIG 817
            R+  ++ A   F + K   F +KA E+  +LLRIQ  LE       F+D S+ DT+ T I+ G+++ A ++  +F++ +KR +WLK+ ALA   DW+ LE+FSK K+ PIGY PFVE C+    K EA KY  + V P ++ +A   +G
Sbjct:  647 RVAALQTAADAFYKAKNE-FAAKATEDQMRLLRIQRRLE-DELGGRFLDLSLHDTVTTLILGGHNKRAEQLARDFRIPDKRLWWLKLAALADLEDWEELEKFSKSKKSPIGYLPFVEICMKQHNKHEAKKYASR-VGPEQKVKALLLVG 792          
BLAST of CX047512 vs. ExPASy Swiss-Prot
Match: VPS16_BOVIN (Vacuolar protein sorting-associated protein 16 homolog OS=Bos taurus GN=VPS16 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.687e-23
Identity = 58/149 (38.93%), Postives = 89/149 (59.73%), Query Frame = -1
Query:  371 RIKRIEKAHSLFSETKEHTFESKAAEEHAKLLRIQHELEVSTKQAIFVDSSISDTIRTCIVLGNHRAAMKVKTEFKVSEKRWYWLKVFALATKRDWDALERFSKEKRPPIGYRPFVEACVDADEKGEALKYIPKLVDPRERAEAYARIG 817
            R+  ++ A   F + K   F +KA E+  +LLR+Q  LE       F+D S+ DT+ T I+ G ++ A ++  +F++ +KR +WLK+ ALA   DW+ LE+FSK K+ PIGY PFVE C+    K EA KY  + V P ++ +A   +G
Sbjct:  647 RVAALQTAADAFYKAKNE-FAAKATEDQMRLLRLQRRLE-DELGGQFLDLSLHDTVTTLILSGQNKRAEQLARDFRIPDKRLWWLKLTALADLEDWEELEKFSKSKKSPIGYLPFVEICMKQHNKYEAKKYASR-VGPEQKVKALLLVG 792          
BLAST of CX047512 vs. ExPASy Swiss-Prot
Match: VPS16_HUMAN (Vacuolar protein sorting-associated protein 16 homolog OS=Homo sapiens GN=VPS16 PE=1 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 4.815e-23
Identity = 58/149 (38.93%), Postives = 90/149 (60.40%), Query Frame = -1
Query:  371 RIKRIEKAHSLFSETKEHTFESKAAEEHAKLLRIQHELEVSTKQAIFVDSSISDTIRTCIVLGNHRAAMKVKTEFKVSEKRWYWLKVFALATKRDWDALERFSKEKRPPIGYRPFVEACVDADEKGEALKYIPKLVDPRERAEAYARIG 817
            R+  ++ A   F + K   F +KA E+  +LLR+Q  LE       F+D S+ DT+ T I+ G+++ A ++  +F++ +KR +WLK+ ALA   DW+ LE+FSK K+ PIGY PFVE C+    K EA KY  + V P ++ +A   +G
Sbjct:  647 RVAALQTAADAFYKAKNE-FAAKATEDQMRLLRLQRRLE-DELGGQFLDLSLHDTVTTLILGGHNKRAEQLARDFRIPDKRLWWLKLTALADLEDWEELEKFSKSKKSPIGYLPFVEICMKQHNKYEAKKYASR-VGPEQKVKALLLVG 792          
BLAST of CX047512 vs. ExPASy Swiss-Prot
Match: VPS16_SCHPO (Probable vacuolar protein sorting-associated protein 16 homolog OS=Schizosaccharomyces pombe GN=vps16 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 6.735e-17
Identity = 53/173 (30.64%), Postives = 92/173 (53.18%), Query Frame = -1
Query:  308 RIKRIEKAHSLFSETKEHTFESKAAEEHAKLLRIQHELEVSTKQAIFVDSSISDTIRTCIVLGNHRAAMKVKTEFKVSEKRWYWLKVFALATKRDWDALERFS-KEKRPPIGYRPFVEACVDADEKGEALKYIPKL--VDPRERAEAYARIGMXXXXXXXXXXXXDGELLGRL 817
            RI  ++ A  + SE+KE + E K   +  KLL++Q   E       FV  ++++ +   I +   + A K++++F++ EKR+ WLK+ AL   RDW  +E+++   +R PIG+ PFV   + A  K EA KYIP+   +  +E+ + + ++G              G +LG L
Sbjct:  642 RITSLKSAAKVCSESKELSLEEKCLGDEIKLLQLQQTYE-DQFTGNFVGLTVNEVVVKLIQINQTQRANKLRSDFQIPEKRFAWLKLRALVAIRDWVQIEQWAGSMRRSPIGFEPFVTEILSAGNKKEAAKYIPRCTQLTTQEKVDMWVQVGDVKSASEEAAKSKSGSVLGDL 813          
The following BLAST results are available for this feature:
BLAST of CX047512 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
VPS16_DICDI6.493e-2842.38Vacuolar protein sorting-associated protein 16 hom... [more]
VPS16_MOUSE2.161e-2339.60Vacuolar protein sorting-associated protein 16 hom... [more]
VPS16_BOVIN3.687e-2338.93Vacuolar protein sorting-associated protein 16 hom... [more]
VPS16_HUMAN4.815e-2338.93Vacuolar protein sorting-associated protein 16 hom... [more]
VPS16_SCHPO6.735e-1730.64Probable vacuolar protein sorting-associated prote... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS09_14F02_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-14F02-L3-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047512 ID=CX047512; Name=CX047512; organism=Citrus sinensis; type=EST; length=880bp
TTTTTTTTTTTTTTTTTATGCATTCCCTTCGAGGGGAATGAAAATTCAAC
CTTTCTCTCTCATACAAGATAACTTACAAAATAATCACAAACTATTACAA
TATCACTATCTGCCTTTACACTCATTCAACATGATCTATGCACACAACAG
ACAATAACTTACAATATTTATATATATAACAAAAAATATTTAAAAGAAAA
AAAAATATATTGAATTGACAGGGCTAAAAAACACCTTGGAAGGACAATCT
ATCTCGAAGAGTATCAAAAATTGATGAAGCTGCAGCATTTTGTGCAAATG
TCAATTTCAATCGACCAAGCAATTCACCATCCTTTGCTTGTGAAGCAGCA
TCAGCAGCTTCTTTGGCCATACCAATCCGGGCATAAGCCTCAGCTCTTTC
TCGAGGATCTACAAGTTTTGGAATATATTTGAGTGCTTCACCTTTCTCAT
CTGCATCTACACATGCTTCGACAAATGGCCTGTAACCAATTGGTGGTCTC
TTCTCCTTTGAGAACCTCTCCAGGGCATCCCAATCTCTTTTTGTAGCCAA
AGCAAAAACTTTAAGCCAATACCATCTCTTCTCAGAAACCTTGAATTCTG
TCTTCACTTTCATGGCAGCTCTATGATTTCCCAGCACAATACATGTGCGA
ATAGTGTCGCTTATGCTTGAATCAACAAATATTGCTTGTTTGGTAGACAC
TTCTAACTCATGTTGGATTCTCAACAATTTTGCATGTTCTTCAGCTGCTT
TTGACTCAAAAGTGTGCTCCTTGGTCTCTGAGAAGAGACTATGCGCCTTC
TCAATTCGTTTTATGCGTGGACCATGAAGGGCAGATCCATTGCTTGCCAT
AGGATTTTTTCCGAGTTCCCATGATTCTTT
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