CX047512
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX047512 vs. ExPASy Swiss-Prot
Match: VPS16_DICDI (Vacuolar protein sorting-associated protein 16 homolog OS=Dictyostelium discoideum GN=vps16 PE=3 SV=2) HSP 1 Score: 124.79 bits (312), Expect = 6.493e-28 Identity = 64/151 (42.38%), Postives = 93/151 (61.59%), Query Frame = -1 Query: 371 RIKRIEKA--HSLFSETKEHTFESKAAEEHAKLLRIQHELEVSTKQAIFVDSSISDTIRTCIVLGNHRAAMKVKTEFKVSEKRWYWLKVFALATKRDWDALERFSKEKRPPIGYRPFVEACVDADEKGEALKYIPKLVDPRERAEAYARIG 817 RIK K+ H S+ K+ SK ++ KL +Q ELE + + FV SI+DTI I + + A +++EFKV +KR++W+K+ AL+ DW+ L +FSKEK+ PIGY PFVE C+D + EALKYIPK+ D + + Y +IG Sbjct: 639 RIKAYNKSIEHYHHSKDKDDQATSKFIDDQIKLEMLQKELETNLQDESFVGISINDTIYKLITMNQPKKAQSIRSEFKVPDKRFWWIKIKALSIMNDWEELMKFSKEKKSPIGYEPFVEVCLDQKNQIEALKYIPKITDILPKIQFYIQIG 789
BLAST of CX047512 vs. ExPASy Swiss-Prot
Match: VPS16_MOUSE (Vacuolar protein sorting-associated protein 16 homolog OS=Mus musculus GN=Vps16 PE=1 SV=2) HSP 1 Score: 109.768 bits (273), Expect = 2.161e-23 Identity = 59/149 (39.60%), Postives = 90/149 (60.40%), Query Frame = -1 Query: 371 RIKRIEKAHSLFSETKEHTFESKAAEEHAKLLRIQHELEVSTKQAIFVDSSISDTIRTCIVLGNHRAAMKVKTEFKVSEKRWYWLKVFALATKRDWDALERFSKEKRPPIGYRPFVEACVDADEKGEALKYIPKLVDPRERAEAYARIG 817 R+ ++ A F + K F +KA E+ +LLRIQ LE F+D S+ DT+ T I+ G+++ A ++ +F++ +KR +WLK+ ALA DW+ LE+FSK K+ PIGY PFVE C+ K EA KY + V P ++ +A +G Sbjct: 647 RVAALQTAADAFYKAKNE-FAAKATEDQMRLLRIQRRLE-DELGGRFLDLSLHDTVTTLILGGHNKRAEQLARDFRIPDKRLWWLKLAALADLEDWEELEKFSKSKKSPIGYLPFVEICMKQHNKHEAKKYASR-VGPEQKVKALLLVG 792
BLAST of CX047512 vs. ExPASy Swiss-Prot
Match: VPS16_BOVIN (Vacuolar protein sorting-associated protein 16 homolog OS=Bos taurus GN=VPS16 PE=2 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 3.687e-23 Identity = 58/149 (38.93%), Postives = 89/149 (59.73%), Query Frame = -1 Query: 371 RIKRIEKAHSLFSETKEHTFESKAAEEHAKLLRIQHELEVSTKQAIFVDSSISDTIRTCIVLGNHRAAMKVKTEFKVSEKRWYWLKVFALATKRDWDALERFSKEKRPPIGYRPFVEACVDADEKGEALKYIPKLVDPRERAEAYARIG 817 R+ ++ A F + K F +KA E+ +LLR+Q LE F+D S+ DT+ T I+ G ++ A ++ +F++ +KR +WLK+ ALA DW+ LE+FSK K+ PIGY PFVE C+ K EA KY + V P ++ +A +G Sbjct: 647 RVAALQTAADAFYKAKNE-FAAKATEDQMRLLRLQRRLE-DELGGQFLDLSLHDTVTTLILSGQNKRAEQLARDFRIPDKRLWWLKLTALADLEDWEELEKFSKSKKSPIGYLPFVEICMKQHNKYEAKKYASR-VGPEQKVKALLLVG 792
BLAST of CX047512 vs. ExPASy Swiss-Prot
Match: VPS16_HUMAN (Vacuolar protein sorting-associated protein 16 homolog OS=Homo sapiens GN=VPS16 PE=1 SV=2) HSP 1 Score: 108.612 bits (270), Expect = 4.815e-23 Identity = 58/149 (38.93%), Postives = 90/149 (60.40%), Query Frame = -1 Query: 371 RIKRIEKAHSLFSETKEHTFESKAAEEHAKLLRIQHELEVSTKQAIFVDSSISDTIRTCIVLGNHRAAMKVKTEFKVSEKRWYWLKVFALATKRDWDALERFSKEKRPPIGYRPFVEACVDADEKGEALKYIPKLVDPRERAEAYARIG 817 R+ ++ A F + K F +KA E+ +LLR+Q LE F+D S+ DT+ T I+ G+++ A ++ +F++ +KR +WLK+ ALA DW+ LE+FSK K+ PIGY PFVE C+ K EA KY + V P ++ +A +G Sbjct: 647 RVAALQTAADAFYKAKNE-FAAKATEDQMRLLRLQRRLE-DELGGQFLDLSLHDTVTTLILGGHNKRAEQLARDFRIPDKRLWWLKLTALADLEDWEELEKFSKSKKSPIGYLPFVEICMKQHNKYEAKKYASR-VGPEQKVKALLLVG 792
BLAST of CX047512 vs. ExPASy Swiss-Prot
Match: VPS16_SCHPO (Probable vacuolar protein sorting-associated protein 16 homolog OS=Schizosaccharomyces pombe GN=vps16 PE=2 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 6.735e-17 Identity = 53/173 (30.64%), Postives = 92/173 (53.18%), Query Frame = -1 Query: 308 RIKRIEKAHSLFSETKEHTFESKAAEEHAKLLRIQHELEVSTKQAIFVDSSISDTIRTCIVLGNHRAAMKVKTEFKVSEKRWYWLKVFALATKRDWDALERFS-KEKRPPIGYRPFVEACVDADEKGEALKYIPKL--VDPRERAEAYARIGMXXXXXXXXXXXXDGELLGRL 817 RI ++ A + SE+KE + E K + KLL++Q E FV ++++ + I + + A K++++F++ EKR+ WLK+ AL RDW +E+++ +R PIG+ PFV + A K EA KYIP+ + +E+ + + ++G G +LG L Sbjct: 642 RITSLKSAAKVCSESKELSLEEKCLGDEIKLLQLQQTYE-DQFTGNFVGLTVNEVVVKLIQINQTQRANKLRSDFQIPEKRFAWLKLRALVAIRDWVQIEQWAGSMRRSPIGFEPFVTEILSAGNKKEAAKYIPRCTQLTTQEKVDMWVQVGDVKSASEEAAKSKSGSVLGDL 813 The following BLAST results are available for this feature:
BLAST of CX047512 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 5
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CX047512 ID=CX047512; Name=CX047512; organism=Citrus sinensis; type=EST; length=880bpback to top |