CX047511
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX047511 vs. ExPASy Swiss-Prot
Match: VPS16_HUMAN (Vacuolar protein sorting-associated protein 16 homolog OS=Homo sapiens GN=VPS16 PE=1 SV=2) HSP 1 Score: 211.46 bits (537), Expect = 4.519e-54 Identity = 119/272 (43.75%), Postives = 163/272 (59.93%), Query Frame = 1 Query: 1 VLLYWNDMLVMVAPQAEPVQYFYDEPLVLIPECDGVRILSNSSMEFLQRVPASTEQIFAIGSTSPAALLHDALDHFDRRSAKADENLRLIR--ASLPKAVEACIDAAGHEFDISRQRTLLRAASYGQAFCSNFQRDRIQEMCKTLRVLNAARDPEIGIPLSIQQYKSLTASVLIGRLINANCHLLALRISEYLGMNQ----EVVIMHWACSKITASLAIPDVTXXXXXXXXXXXXXGISYAAVAAHADKSGRRKLAAMLVEHEPRSSKQVPL 798 V++ W L++V E +Q+ DE L+PE DGVRI S S+ EFL VPA++E+IF I S +P ALL +A +++ S KADE LR I+ L +AV+ CI+AAGHE Q++LLRAAS+G+ F F D MC+ LRVLNA RD IGIPL+ QYK LT VL+ RL+ + LA++I EYL + + ++ HWAC K+ + D G+SY+ +AA A GR +LA L+E+EPRS +QVPL Sbjct: 281 VVVAWERRLMVVGDAPESIQFVLDEDSYLVPELDGVRIFSRSTHEFLHEVPAASEEIFKIASMAPGALLLEAQKEYEKESQKADEYLREIQELGQLTQAVQQCIEAAGHEHQPDMQKSLLRAASFGKCFLDRFPPDSFVHMCQDLRVLNAVRDYHIGIPLTYSQYKQLTIQVLLDRLVLRRLYPLAIQICEYLRLPEVQGVSRILAHWACYKVQQK-DVSDEDVARAINQKLGDTPGVSYSDIAARAYGCGRTELAIKLLEYEPRSGEQVPL 551
BLAST of CX047511 vs. ExPASy Swiss-Prot
Match: VPS16_DICDI (Vacuolar protein sorting-associated protein 16 homolog OS=Dictyostelium discoideum GN=vps16 PE=3 SV=2) HSP 1 Score: 211.46 bits (537), Expect = 4.519e-54 Identity = 116/269 (43.12%), Postives = 167/269 (62.08%), Query Frame = 1 Query: 1 VLLYWNDM----LVMVAPQAEPVQYFYDEPLVLIPECDGVRILSNSSMEFLQRVPASTEQIFAIGSTSPAALLHDALDHFDRRSAKADENLRLIRASLPKAVEACIDAAGHEFDISRQRTLLRAASYGQAFCSNFQRDRIQEMCKTLRVLNAARDPEIGIPLSIQQYKSLTASVLIGRLINANCHLLALRISEYLGMNQEVVIMHWACSKITASLAIPDVTXXXXXXXXXXXXXGISYAAVAAHADKSGRRKLAAMLVEHEPRSSKQVP 795 V++YW+ + L + ++ D+P+ L+ E DG+RI+S+++ EF +V T IF IG+TSPA++L+DA DHF +S +ADE++R I L AV CI AAG EF+ Q LL+AAS+G+ F N+ + MC++LRVLNA R EIGIPLSI+QY + LI RLI+ HLLA RI +YL + +VV+ HWAC+K+ IPD GIS+A +A+ A +GR KLA L+E+EP++++QVP Sbjct: 274 VMMYWDSIKDPILFYFSKGDSWAKFTLDQPVSLVTEIDGLRIISDTTSEFFHKVSDVTIDIFKIGTTSPASILYDATDHFISKSPQADESIRSINDQLEDAVNDCILAAGFEFNGGEQSKLLKAASFGKCFLENYNPSQFVTMCRSLRVLNAVRHHEIGIPLSIKQYYHIGIEELIDRLISRRKHLLAWRICDYLKIKSDVVLNHWACTKVRTD--IPDQELGKIIIKKLESVPGISFANIASAAYLAGRSKLATKLLEYEPKAAEQVP 540
BLAST of CX047511 vs. ExPASy Swiss-Prot
Match: VPS16_BOVIN (Vacuolar protein sorting-associated protein 16 homolog OS=Bos taurus GN=VPS16 PE=2 SV=1) HSP 1 Score: 210.69 bits (535), Expect = 7.708e-54 Identity = 118/272 (43.38%), Postives = 163/272 (59.93%), Query Frame = 1 Query: 1 VLLYWNDMLVMVAPQAEPVQYFYDEPLVLIPECDGVRILSNSSMEFLQRVPASTEQIFAIGSTSPAALLHDALDHFDRRSAKADENLRLIR--ASLPKAVEACIDAAGHEFDISRQRTLLRAASYGQAFCSNFQRDRIQEMCKTLRVLNAARDPEIGIPLSIQQYKSLTASVLIGRLINANCHLLALRISEYLGMNQ----EVVIMHWACSKITASLAIPDVTXXXXXXXXXXXXXGISYAAVAAHADKSGRRKLAAMLVEHEPRSSKQVPL 798 V++ W L++V E +Q+ DE L+PE DGVR+ S S+ EFL VP ++E+IF I S +P ALL +A +++ S KADE LR I+ LP+AV+ CI+AAGHE Q++LLRAAS+G+ F F D MC+ LRVLNA RD IGIPL+ QYK LT VL+ RL+ + LA++I EYL + + ++ HWAC K+ + D G+SY+ +AA A GR +LA L+E+EPRS +QVPL Sbjct: 281 VVVAWERRLMVVGDAPESIQFVLDEDSYLVPELDGVRVFSRSTHEFLHEVPVASEEIFKIASMAPGALLLEAQKEYEKESQKADEYLREIQELGQLPQAVQQCIEAAGHEHWPDMQKSLLRAASFGKCFLDRFPPDSFVRMCQDLRVLNAIRDYHIGIPLTYSQYKQLTIQVLLDRLVLRRLYPLAIQICEYLRLPEVQGVSRILAHWACYKVQQK-DVSDEDVARAINQKLGDTPGVSYSDIAARAYGCGRTELAIKLLEYEPRSGEQVPL 551
BLAST of CX047511 vs. ExPASy Swiss-Prot
Match: VPS16_MOUSE (Vacuolar protein sorting-associated protein 16 homolog OS=Mus musculus GN=Vps16 PE=1 SV=2) HSP 1 Score: 207.994 bits (528), Expect = 4.996e-53 Identity = 118/272 (43.38%), Postives = 162/272 (59.56%), Query Frame = 1 Query: 1 VLLYWNDMLVMVAPQAEPVQYFYDEPLVLIPECDGVRILSNSSMEFLQRVPASTEQIFAIGSTSPAALLHDALDHFDRRSAKADENLRLIR--ASLPKAVEACIDAAGHEFDISRQRTLLRAASYGQAFCSNFQRDRIQEMCKTLRVLNAARDPEIGIPLSIQQYKSLTASVLIGRLINANCHLLALRISEYLGMNQ----EVVIMHWACSKITASLAIPDVTXXXXXXXXXXXXXGISYAAVAAHADKSGRRKLAAMLVEHEPRSSKQVPL 798 V++ W L++V E +Q+ DE L+PE DGVRI S S+ EFL VP ++E+IF I S +P ALL +A +++ S KADE LR I+ L +AV+ CI+AAGHE Q++LLRAAS+G+ F F D MC+ LRVLNA RD IGIPL+ QYK LT VL+ RL+ + LA++I EYL + + ++ HWAC K+ + D G+SY+ +AA A GR +LA L+E+EPRS +QVPL Sbjct: 281 VVVAWERRLMVVGNAPESIQFVLDEDSYLVPELDGVRIFSRSTHEFLHEVPVASEEIFKIASMAPGALLLEAQKEYEKESQKADEYLREIQELGQLIQAVQQCIEAAGHEHQPDMQKSLLRAASFGKCFLDRFPPDSFVHMCQDLRVLNAIRDYHIGIPLTYTQYKQLTIQVLLDRLVLRRLYPLAIQICEYLRLPEVQGVSRILAHWACYKVQQK-DVSDEDVARAINQKLGDTPGVSYSDIAARAYGCGRTELAIKLLEYEPRSGEQVPL 551
BLAST of CX047511 vs. ExPASy Swiss-Prot
Match: VPS16_SCHPO (Probable vacuolar protein sorting-associated protein 16 homolog OS=Schizosaccharomyces pombe GN=vps16 PE=2 SV=1) HSP 1 Score: 141.354 bits (355), Expect = 5.743e-33 Identity = 91/266 (34.21%), Postives = 140/266 (52.63%), Query Frame = 1 Query: 1 VLLYWNDMLVMVAPQAEPVQYFYDEPLVLIPECDGVRILSNSSMEFLQRVPASTEQIFAIGSTSPAALLHDALDHFDRRSAKADENLRLIRASLPKAVEACIDAAGHEFDISRQRTLLRAASYGQAFCSNFQRDRIQEMCKTLRVLNAARDPEIGIPLSIQQYKSLTASVLIGRLINANCHLLALRISEYLGMNQEVVIMHWACSKITASLAIPDVTXXXXXXXXXXXXXGISYAAVAAHADKSGRRKLAAMLVEHEPRSSKQVPL 798 V+L ++L +V P V Y Y+ ++ E DGVRIL+ S EFL++VPA E IF IGS +P A L +A +S A++ L ++ L AV+ C+ A+ +EF I Q+ LL AAS G+ + ++C+ LRVLNAARDP +GI ++ ++Y L LI R + LA++ S ++ + + V + WA + I S + P+ ISY +A A + GR L+ L++ EP + QV L Sbjct: 283 VVLVHENLLTLVGPFGGSVPYLYNHTPIVSTEVDGVRILTKDSSEFLRKVPAPLENIFHIGSKTPGAKLVEAFQKMKLKSVFAEKMLLELKDELHDAVDTCVQASLNEFSIEWQKVLLEAASLGKNSLRMYNHQEYVDVCRELRVLNAARDPNVGIYITHEEYLHLGLERLIQRFSCRQLYGLAVQASMWMQIPCDWVYIQWAQTYIKQS-SEPEEVVLDNIVKRLSSRKYISYEKIARTAYQEGRLILSTKLLDFEPLAKHQVML 547
BLAST of CX047511 vs. ExPASy Swiss-Prot
Match: VPS16_YEAST (Vacuolar protein sorting-associated protein 16 OS=Saccharomyces cerevisiae GN=VPS16 PE=1 SV=2) HSP 1 Score: 88.1965 bits (217), Expect = 5.770e-17 Identity = 66/216 (30.56%), Postives = 105/216 (48.61%), Query Frame = 1 Query: 13 WNDMLVMVAPQAEPVQYFYDEPLV-LIPECDGVRILSNSSMEFLQRVPASTEQIFAIGSTSPAALLHDALDHFDRRSAKADENLRLIRASLPKAVEACIDAAGHEFDISRQRTLLRAASYGQAFC--SNFQRDRIQEMCKTLRVLNAARDPEIGIPLSIQQYKSLTASVLIGRLINANCHLLALRISEYLGMN--QEVVIMHWACSKITASLAIPD 645 + D + + P V ++Y + L E DG+++++ + FL RV T IF IGST P A+L D+ + + KA E L+ L K V CI AA EF+ Q+ LL AASYG+A +F C T+++LN R GI L++++Y+ ++ +I RL+ + + ++I + V WA KI S + D Sbjct: 247 FEDEIKLYGPDGLYVTFWYPFTVTNLRAEVDGLKVITTEKIYFLSRVQPQTSNIFRIGSTEPGAMLVDSFSLLEDHAPKAIEILK--NFVLEKGVLDCIAAAIDEFEPKLQKMLLNAASYGKASLQYKSFDASIFVNACNTIKLLNCFR--SFGIFLTVEEYRCISLKGVIDRLLKYHRYYECIQICKLANERFLLGYVFTEWAKDKIKGSPDMED 458
BLAST of CX047511 vs. ExPASy Swiss-Prot
Match: VPS16_CAEEL (Vacuolar protein sorting-associated protein 16 homolog OS=Caenorhabditis elegans GN=vps-16 PE=2 SV=2) HSP 1 Score: 72.7886 bits (177), Expect = 2.509e-12 Identity = 46/187 (24.60%), Postives = 92/187 (49.20%), Query Frame = 1 Query: 94 ECDGVRILSNSSMEFLQRVPASTEQIFAIGSTSPAALLHDALDHFDRRSAKADENLRLIRASLPKAVEACIDAAGHEFDISRQRTLLRAASYGQAFCSNF-QRDRIQEMCKTLRVLNAARDPEIGIPLSIQQYKSLTASVLIGRLINANCHLLALRISEYLG----MNQEVVIMHW---ACSKITAS 630 E DG+R+ ++ +EF++ + A L+ A + + + L KA++ CI A + Q+ LL+AA +G A+ + ++ K +RVLN R GIPL+ +Q++++ + +I RLI+ + +A++++++LG N + V++ W + SK++ S Sbjct: 323 EPDGIRLFESTQVEFVEAASREKIAVLNRNPNEDGAHLYKAAQEMSQGTGHNSFAASTVIQDLYKAIDDCISTACDTWQPEEQKLLLKAARFGMAYTNTTPDTTKLMRAIKEIRVLNELRMVRTGIPLTHRQFRAIGETCVINRLIDMGSYSVAIKVAQWLGGETSENVDRVLLEWVRRSISKVSKS 509
BLAST of CX047511 vs. ExPASy Swiss-Prot
Match: VPS16_CAEBR (Vacuolar protein sorting-associated protein 16 homolog OS=Caenorhabditis briggsae GN=vps-16 PE=3 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 4.279e-12 Identity = 49/189 (25.93%), Postives = 98/189 (51.85%), Query Frame = 1 Query: 94 ECDGVRILSNSSMEFLQRVPASTEQIFAIGST--SPAALLHDALDHFDRRSAKADENLRLIRASLPKAVEACIDAAGHEFDISRQRTLLRAASYGQAFCSNF-QRDRIQEMCKTLRVLNAARDPEIGIPLSIQQYKSLTASVLIGRLINANCHLLALRISEYLG----MNQEVVIMHW---ACSKITAS 630 E DG+R+ ++ +EF++ AS E+I + + A L+ A ++ + + + KA++ CI A + Q+ LL+AA +G A+ + ++ K +RVLN R GIPL+ +QY+ + + +I RLI+ + +A++++++LG + + V++ W + SK++ S Sbjct: 329 EPDGIRLFESTRVEFVEA--ASREKIAVLNRSLNEDGAYLYKAAQEMEQGTGHNSFAASTVIQDMYKAIDDCISTACDTWQPEEQKLLLKAARFGMAYTNTTPDTTKLMRAIKEIRVLNELRMVRTGIPLTHRQYRIIGDTCIINRLIDMGSYSVAIKVAQWLGGENCESVDRVLLEWVRRSISKVSRS 515 The following BLAST results are available for this feature:
BLAST of CX047511 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 8
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CX047511 ID=CX047511; Name=CX047511; organism=Citrus sinensis; type=EST; length=798bpback to top |