CX047511

Overview
NameCX047511
Unique NameCX047511
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length798
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047511 vs. ExPASy Swiss-Prot
Match: VPS16_HUMAN (Vacuolar protein sorting-associated protein 16 homolog OS=Homo sapiens GN=VPS16 PE=1 SV=2)

HSP 1 Score: 211.46 bits (537), Expect = 4.519e-54
Identity = 119/272 (43.75%), Postives = 163/272 (59.93%), Query Frame = 1
Query:    1 VLLYWNDMLVMVAPQAEPVQYFYDEPLVLIPECDGVRILSNSSMEFLQRVPASTEQIFAIGSTSPAALLHDALDHFDRRSAKADENLRLIR--ASLPKAVEACIDAAGHEFDISRQRTLLRAASYGQAFCSNFQRDRIQEMCKTLRVLNAARDPEIGIPLSIQQYKSLTASVLIGRLINANCHLLALRISEYLGMNQ----EVVIMHWACSKITASLAIPDVTXXXXXXXXXXXXXGISYAAVAAHADKSGRRKLAAMLVEHEPRSSKQVPL 798
            V++ W   L++V    E +Q+  DE   L+PE DGVRI S S+ EFL  VPA++E+IF I S +P ALL +A   +++ S KADE LR I+    L +AV+ CI+AAGHE     Q++LLRAAS+G+ F   F  D    MC+ LRVLNA RD  IGIPL+  QYK LT  VL+ RL+    + LA++I EYL + +      ++ HWAC K+     + D               G+SY+ +AA A   GR +LA  L+E+EPRS +QVPL
Sbjct:  281 VVVAWERRLMVVGDAPESIQFVLDEDSYLVPELDGVRIFSRSTHEFLHEVPAASEEIFKIASMAPGALLLEAQKEYEKESQKADEYLREIQELGQLTQAVQQCIEAAGHEHQPDMQKSLLRAASFGKCFLDRFPPDSFVHMCQDLRVLNAVRDYHIGIPLTYSQYKQLTIQVLLDRLVLRRLYPLAIQICEYLRLPEVQGVSRILAHWACYKVQQK-DVSDEDVARAINQKLGDTPGVSYSDIAARAYGCGRTELAIKLLEYEPRSGEQVPL 551          
BLAST of CX047511 vs. ExPASy Swiss-Prot
Match: VPS16_DICDI (Vacuolar protein sorting-associated protein 16 homolog OS=Dictyostelium discoideum GN=vps16 PE=3 SV=2)

HSP 1 Score: 211.46 bits (537), Expect = 4.519e-54
Identity = 116/269 (43.12%), Postives = 167/269 (62.08%), Query Frame = 1
Query:    1 VLLYWNDM----LVMVAPQAEPVQYFYDEPLVLIPECDGVRILSNSSMEFLQRVPASTEQIFAIGSTSPAALLHDALDHFDRRSAKADENLRLIRASLPKAVEACIDAAGHEFDISRQRTLLRAASYGQAFCSNFQRDRIQEMCKTLRVLNAARDPEIGIPLSIQQYKSLTASVLIGRLINANCHLLALRISEYLGMNQEVVIMHWACSKITASLAIPDVTXXXXXXXXXXXXXGISYAAVAAHADKSGRRKLAAMLVEHEPRSSKQVP 795
            V++YW+ +    L   +      ++  D+P+ L+ E DG+RI+S+++ EF  +V   T  IF IG+TSPA++L+DA DHF  +S +ADE++R I   L  AV  CI AAG EF+   Q  LL+AAS+G+ F  N+   +   MC++LRVLNA R  EIGIPLSI+QY  +    LI RLI+   HLLA RI +YL +  +VV+ HWAC+K+     IPD               GIS+A +A+ A  +GR KLA  L+E+EP++++QVP
Sbjct:  274 VMMYWDSIKDPILFYFSKGDSWAKFTLDQPVSLVTEIDGLRIISDTTSEFFHKVSDVTIDIFKIGTTSPASILYDATDHFISKSPQADESIRSINDQLEDAVNDCILAAGFEFNGGEQSKLLKAASFGKCFLENYNPSQFVTMCRSLRVLNAVRHHEIGIPLSIKQYYHIGIEELIDRLISRRKHLLAWRICDYLKIKSDVVLNHWACTKVRTD--IPDQELGKIIIKKLESVPGISFANIASAAYLAGRSKLATKLLEYEPKAAEQVP 540          
BLAST of CX047511 vs. ExPASy Swiss-Prot
Match: VPS16_BOVIN (Vacuolar protein sorting-associated protein 16 homolog OS=Bos taurus GN=VPS16 PE=2 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 7.708e-54
Identity = 118/272 (43.38%), Postives = 163/272 (59.93%), Query Frame = 1
Query:    1 VLLYWNDMLVMVAPQAEPVQYFYDEPLVLIPECDGVRILSNSSMEFLQRVPASTEQIFAIGSTSPAALLHDALDHFDRRSAKADENLRLIR--ASLPKAVEACIDAAGHEFDISRQRTLLRAASYGQAFCSNFQRDRIQEMCKTLRVLNAARDPEIGIPLSIQQYKSLTASVLIGRLINANCHLLALRISEYLGMNQ----EVVIMHWACSKITASLAIPDVTXXXXXXXXXXXXXGISYAAVAAHADKSGRRKLAAMLVEHEPRSSKQVPL 798
            V++ W   L++V    E +Q+  DE   L+PE DGVR+ S S+ EFL  VP ++E+IF I S +P ALL +A   +++ S KADE LR I+    LP+AV+ CI+AAGHE     Q++LLRAAS+G+ F   F  D    MC+ LRVLNA RD  IGIPL+  QYK LT  VL+ RL+    + LA++I EYL + +      ++ HWAC K+     + D               G+SY+ +AA A   GR +LA  L+E+EPRS +QVPL
Sbjct:  281 VVVAWERRLMVVGDAPESIQFVLDEDSYLVPELDGVRVFSRSTHEFLHEVPVASEEIFKIASMAPGALLLEAQKEYEKESQKADEYLREIQELGQLPQAVQQCIEAAGHEHWPDMQKSLLRAASFGKCFLDRFPPDSFVRMCQDLRVLNAIRDYHIGIPLTYSQYKQLTIQVLLDRLVLRRLYPLAIQICEYLRLPEVQGVSRILAHWACYKVQQK-DVSDEDVARAINQKLGDTPGVSYSDIAARAYGCGRTELAIKLLEYEPRSGEQVPL 551          
BLAST of CX047511 vs. ExPASy Swiss-Prot
Match: VPS16_MOUSE (Vacuolar protein sorting-associated protein 16 homolog OS=Mus musculus GN=Vps16 PE=1 SV=2)

HSP 1 Score: 207.994 bits (528), Expect = 4.996e-53
Identity = 118/272 (43.38%), Postives = 162/272 (59.56%), Query Frame = 1
Query:    1 VLLYWNDMLVMVAPQAEPVQYFYDEPLVLIPECDGVRILSNSSMEFLQRVPASTEQIFAIGSTSPAALLHDALDHFDRRSAKADENLRLIR--ASLPKAVEACIDAAGHEFDISRQRTLLRAASYGQAFCSNFQRDRIQEMCKTLRVLNAARDPEIGIPLSIQQYKSLTASVLIGRLINANCHLLALRISEYLGMNQ----EVVIMHWACSKITASLAIPDVTXXXXXXXXXXXXXGISYAAVAAHADKSGRRKLAAMLVEHEPRSSKQVPL 798
            V++ W   L++V    E +Q+  DE   L+PE DGVRI S S+ EFL  VP ++E+IF I S +P ALL +A   +++ S KADE LR I+    L +AV+ CI+AAGHE     Q++LLRAAS+G+ F   F  D    MC+ LRVLNA RD  IGIPL+  QYK LT  VL+ RL+    + LA++I EYL + +      ++ HWAC K+     + D               G+SY+ +AA A   GR +LA  L+E+EPRS +QVPL
Sbjct:  281 VVVAWERRLMVVGNAPESIQFVLDEDSYLVPELDGVRIFSRSTHEFLHEVPVASEEIFKIASMAPGALLLEAQKEYEKESQKADEYLREIQELGQLIQAVQQCIEAAGHEHQPDMQKSLLRAASFGKCFLDRFPPDSFVHMCQDLRVLNAIRDYHIGIPLTYTQYKQLTIQVLLDRLVLRRLYPLAIQICEYLRLPEVQGVSRILAHWACYKVQQK-DVSDEDVARAINQKLGDTPGVSYSDIAARAYGCGRTELAIKLLEYEPRSGEQVPL 551          
BLAST of CX047511 vs. ExPASy Swiss-Prot
Match: VPS16_SCHPO (Probable vacuolar protein sorting-associated protein 16 homolog OS=Schizosaccharomyces pombe GN=vps16 PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 5.743e-33
Identity = 91/266 (34.21%), Postives = 140/266 (52.63%), Query Frame = 1
Query:    1 VLLYWNDMLVMVAPQAEPVQYFYDEPLVLIPECDGVRILSNSSMEFLQRVPASTEQIFAIGSTSPAALLHDALDHFDRRSAKADENLRLIRASLPKAVEACIDAAGHEFDISRQRTLLRAASYGQAFCSNFQRDRIQEMCKTLRVLNAARDPEIGIPLSIQQYKSLTASVLIGRLINANCHLLALRISEYLGMNQEVVIMHWACSKITASLAIPDVTXXXXXXXXXXXXXGISYAAVAAHADKSGRRKLAAMLVEHEPRSSKQVPL 798
            V+L   ++L +V P    V Y Y+   ++  E DGVRIL+  S EFL++VPA  E IF IGS +P A L +A      +S  A++ L  ++  L  AV+ C+ A+ +EF I  Q+ LL AAS G+     +      ++C+ LRVLNAARDP +GI ++ ++Y  L    LI R      + LA++ S ++ +  + V + WA + I  S + P+                ISY  +A  A + GR  L+  L++ EP +  QV L
Sbjct:  283 VVLVHENLLTLVGPFGGSVPYLYNHTPIVSTEVDGVRILTKDSSEFLRKVPAPLENIFHIGSKTPGAKLVEAFQKMKLKSVFAEKMLLELKDELHDAVDTCVQASLNEFSIEWQKVLLEAASLGKNSLRMYNHQEYVDVCRELRVLNAARDPNVGIYITHEEYLHLGLERLIQRFSCRQLYGLAVQASMWMQIPCDWVYIQWAQTYIKQS-SEPEEVVLDNIVKRLSSRKYISYEKIARTAYQEGRLILSTKLLDFEPLAKHQVML 547          
BLAST of CX047511 vs. ExPASy Swiss-Prot
Match: VPS16_YEAST (Vacuolar protein sorting-associated protein 16 OS=Saccharomyces cerevisiae GN=VPS16 PE=1 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 5.770e-17
Identity = 66/216 (30.56%), Postives = 105/216 (48.61%), Query Frame = 1
Query:   13 WNDMLVMVAPQAEPVQYFYDEPLV-LIPECDGVRILSNSSMEFLQRVPASTEQIFAIGSTSPAALLHDALDHFDRRSAKADENLRLIRASLPKAVEACIDAAGHEFDISRQRTLLRAASYGQAFC--SNFQRDRIQEMCKTLRVLNAARDPEIGIPLSIQQYKSLTASVLIGRLINANCHLLALRISEYLGMN--QEVVIMHWACSKITASLAIPD 645
            + D + +  P    V ++Y   +  L  E DG+++++   + FL RV   T  IF IGST P A+L D+    +  + KA E L+     L K V  CI AA  EF+   Q+ LL AASYG+A     +F        C T+++LN  R    GI L++++Y+ ++   +I RL+  + +   ++I +          V   WA  KI  S  + D
Sbjct:  247 FEDEIKLYGPDGLYVTFWYPFTVTNLRAEVDGLKVITTEKIYFLSRVQPQTSNIFRIGSTEPGAMLVDSFSLLEDHAPKAIEILK--NFVLEKGVLDCIAAAIDEFEPKLQKMLLNAASYGKASLQYKSFDASIFVNACNTIKLLNCFR--SFGIFLTVEEYRCISLKGVIDRLLKYHRYYECIQICKLANERFLLGYVFTEWAKDKIKGSPDMED 458          
BLAST of CX047511 vs. ExPASy Swiss-Prot
Match: VPS16_CAEEL (Vacuolar protein sorting-associated protein 16 homolog OS=Caenorhabditis elegans GN=vps-16 PE=2 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 2.509e-12
Identity = 46/187 (24.60%), Postives = 92/187 (49.20%), Query Frame = 1
Query:   94 ECDGVRILSNSSMEFLQRVPASTEQIFAIGSTSPAALLHDALDHFDRRSAKADENLRLIRASLPKAVEACIDAAGHEFDISRQRTLLRAASYGQAFCSNF-QRDRIQEMCKTLRVLNAARDPEIGIPLSIQQYKSLTASVLIGRLINANCHLLALRISEYLG----MNQEVVIMHW---ACSKITAS 630
            E DG+R+  ++ +EF++        +         A L+ A     + +         +   L KA++ CI  A   +    Q+ LL+AA +G A+ +      ++    K +RVLN  R    GIPL+ +Q++++  + +I RLI+   + +A++++++LG     N + V++ W   + SK++ S
Sbjct:  323 EPDGIRLFESTQVEFVEAASREKIAVLNRNPNEDGAHLYKAAQEMSQGTGHNSFAASTVIQDLYKAIDDCISTACDTWQPEEQKLLLKAARFGMAYTNTTPDTTKLMRAIKEIRVLNELRMVRTGIPLTHRQFRAIGETCVINRLIDMGSYSVAIKVAQWLGGETSENVDRVLLEWVRRSISKVSKS 509          
BLAST of CX047511 vs. ExPASy Swiss-Prot
Match: VPS16_CAEBR (Vacuolar protein sorting-associated protein 16 homolog OS=Caenorhabditis briggsae GN=vps-16 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.279e-12
Identity = 49/189 (25.93%), Postives = 98/189 (51.85%), Query Frame = 1
Query:   94 ECDGVRILSNSSMEFLQRVPASTEQIFAIGST--SPAALLHDALDHFDRRSAKADENLRLIRASLPKAVEACIDAAGHEFDISRQRTLLRAASYGQAFCSNF-QRDRIQEMCKTLRVLNAARDPEIGIPLSIQQYKSLTASVLIGRLINANCHLLALRISEYLG----MNQEVVIMHW---ACSKITAS 630
            E DG+R+  ++ +EF++   AS E+I  +  +     A L+ A    ++ +         +   + KA++ CI  A   +    Q+ LL+AA +G A+ +      ++    K +RVLN  R    GIPL+ +QY+ +  + +I RLI+   + +A++++++LG     + + V++ W   + SK++ S
Sbjct:  329 EPDGIRLFESTRVEFVEA--ASREKIAVLNRSLNEDGAYLYKAAQEMEQGTGHNSFAASTVIQDMYKAIDDCISTACDTWQPEEQKLLLKAARFGMAYTNTTPDTTKLMRAIKEIRVLNELRMVRTGIPLTHRQYRIIGDTCIINRLIDMGSYSVAIKVAQWLGGENCESVDRVLLEWVRRSISKVSRS 515          
The following BLAST results are available for this feature:
BLAST of CX047511 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
VPS16_HUMAN4.519e-5443.75Vacuolar protein sorting-associated protein 16 hom... [more]
VPS16_DICDI4.519e-5443.12Vacuolar protein sorting-associated protein 16 hom... [more]
VPS16_BOVIN7.708e-5443.38Vacuolar protein sorting-associated protein 16 hom... [more]
VPS16_MOUSE4.996e-5343.38Vacuolar protein sorting-associated protein 16 hom... [more]
VPS16_SCHPO5.743e-3334.21Probable vacuolar protein sorting-associated prote... [more]
VPS16_YEAST5.770e-1730.56Vacuolar protein sorting-associated protein 16 OS=... [more]
VPS16_CAEEL2.509e-1224.60Vacuolar protein sorting-associated protein 16 hom... [more]
VPS16_CAEBR4.279e-1225.93Vacuolar protein sorting-associated protein 16 hom... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS09_14F02_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-14F02-L3-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047511 ID=CX047511; Name=CX047511; organism=Citrus sinensis; type=EST; length=798bp
GTACTTCTTTATTGGAATGATATGTTGGTGATGGTGGCTCCTCAAGCAGA
GCCTGTGCAGTACTTTTATGACGAGCCACTAGTTCTCATCCCAGAGTGTG
ATGGAGTGAGGATATTGTCCAACTCGAGTATGGAATTTCTGCAACGGGTT
CCTGCTTCTACCGAACAAATCTTTGCAATTGGAAGCACGTCACCCGCAGC
TTTACTTCATGATGCCTTGGATCATTTTGACAGGAGAAGTGCCAAGGCAG
ATGAAAATTTGAGGTTAATACGTGCGTCCTTGCCCAAGGCCGTTGAAGCA
TGTATCGATGCTGCTGGTCATGAATTTGATATTTCTCGTCAAAGGACACT
GTTGAGAGCCGCAAGCTATGGCCAAGCCTTTTGCAGCAATTTTCAACGCG
ATCGTATTCAAGAGATGTGCAAAACTTTGCGGGTTTTGAATGCTGCGCGT
GACCCGGAGATTGGCATCCCTCTCAGTATCCAGCAGTATAAGTCACTTAC
AGCATCAGTGTTGATTGGTCGTTTGATTAATGCCAATTGCCACCTCCTTG
CACTGCGTATATCAGAGTACCTTGGGATGAACCAAGAGGTGGTGATTATG
CACTGGGCTTGTTCCAAGATAACAGCTTCATTAGCAATTCCTGATGTCAC
TCTCCTGGAAATCTTGCTTGACAAGCTTAAACTATGCAAAGGCATATCCT
ATGCAGCAGTTGCTGCTCATGCAGATAAGAGTGGTCGCCGGAAGTTAGCT
GCTATGCTTGTTGAACATGAACCTCGATCTTCCAAACAGGTTCCTCTC
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