CX047505

Overview
NameCX047505
Unique NameCX047505
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length682
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047505 vs. ExPASy Swiss-Prot
Match: ACPM_ARATH (Acyl carrier protein, mitochondrial OS=Arabidopsis thaliana GN=At2g44620 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.115e-27
Identity = 63/120 (52.50%), Postives = 84/120 (70.00%), Query Frame = -1
Query:  320 ALLKYLRVNVATVQRNPSPFSLSFNSIRRCFAEEVRGSFLDKSEVTDRVISVVKNFQKVDPSKVTVNAHFQNDLGLDSLDTVEVVMALEEEFGFEIPDNEADKINTINMAVDFIASHPQA 679
            A+L++LRV V T+  N S   + F    R F+       L +  V DRV+ VVK+F KVDPSKVT   HFQNDLGLDSLDTVE+VMA+EEEF  EIPD EADKI++ ++A++++ +HP +
Sbjct:    6 AILRHLRVPVQTLGLNQS--KIGFLGTIRSFSSH--DDHLSREAVVDRVLDVVKSFPKVDPSKVTPEVHFQNDLGLDSLDTVEIVMAIEEEFKLEIPDKEADKIDSCSLAIEYVYNHPMS 121          
BLAST of CX047505 vs. ExPASy Swiss-Prot
Match: ACPM_NEUCR (Acyl carrier protein, mitochondrial OS=Neurospora crassa GN=nuo-12 PE=1 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 1.905e-20
Identity = 49/85 (57.65%), Postives = 61/85 (71.76%), Query Frame = -1
Query:  320 GSFLDKSEVTDRVISVVKNFQKV-DPSKVTVNAHFQNDLGLDSLDTVEVVMALEEEFGFEIPDNEADKINTINMAVDFIASHPQA 571
            G  L K EV  R+  V+  F KV DP  +T  AHF NDLGLDSLDTVEVVMA+EEEF  EIPD +AD+I++++ AV++I S P A
Sbjct:   49 GGHLKKDEVFSRIAQVLSGFDKVNDPKNITETAHFANDLGLDSLDTVEVVMAIEEEFSIEIPDKDADQIHSVDKAVEYILSQPDA 133          
BLAST of CX047505 vs. ExPASy Swiss-Prot
Match: ACPM_PONPY (Acyl carrier protein, mitochondrial OS=Pongo pygmaeus GN=NDUFAB1 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.510e-17
Identity = 40/71 (56.34%), Postives = 56/71 (78.87%), Query Frame = -1
Query:  335 VTDRVISVVKNFQKVDPSKVTVNAHFQNDLGLDSLDTVEVVMALEEEFGFEIPDNEADKINTINMAVDFIA 547
            + DRV+ V+K + K+DP K++VN+HF  DLGLDSLD VE++MA+E+EFGFEIPD +A+K+      VD+IA
Sbjct:   79 IQDRVLYVLKLYDKIDPEKLSVNSHFMKDLGLDSLDQVEIIMAMEDEFGFEIPDIDAEKLMCPQEIVDYIA 149          
BLAST of CX047505 vs. ExPASy Swiss-Prot
Match: ACPM_PANTR (Acyl carrier protein, mitochondrial OS=Pan troglodytes GN=NDUFAB1 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.510e-17
Identity = 40/71 (56.34%), Postives = 56/71 (78.87%), Query Frame = -1
Query:  335 VTDRVISVVKNFQKVDPSKVTVNAHFQNDLGLDSLDTVEVVMALEEEFGFEIPDNEADKINTINMAVDFIA 547
            + DRV+ V+K + K+DP K++VN+HF  DLGLDSLD VE++MA+E+EFGFEIPD +A+K+      VD+IA
Sbjct:   79 IQDRVLYVLKLYDKIDPEKLSVNSHFMKDLGLDSLDQVEIIMAMEDEFGFEIPDIDAEKLMCPQEIVDYIA 149          
BLAST of CX047505 vs. ExPASy Swiss-Prot
Match: ACPM_MOUSE (Acyl carrier protein, mitochondrial OS=Mus musculus GN=Ndufab1 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.510e-17
Identity = 40/71 (56.34%), Postives = 56/71 (78.87%), Query Frame = -1
Query:  335 VTDRVISVVKNFQKVDPSKVTVNAHFQNDLGLDSLDTVEVVMALEEEFGFEIPDNEADKINTINMAVDFIA 547
            + DRV+ V+K + K+DP K++VN+HF  DLGLDSLD VE++MA+E+EFGFEIPD +A+K+      VD+IA
Sbjct:   79 IKDRVLYVLKLYDKIDPEKLSVNSHFMKDLGLDSLDQVEIIMAMEDEFGFEIPDIDAEKLMCPQEIVDYIA 149          
BLAST of CX047505 vs. ExPASy Swiss-Prot
Match: ACPM_HUMAN (Acyl carrier protein, mitochondrial OS=Homo sapiens GN=NDUFAB1 PE=1 SV=3)

HSP 1 Score: 89.7373 bits (221), Expect = 1.510e-17
Identity = 40/71 (56.34%), Postives = 56/71 (78.87%), Query Frame = -1
Query:  335 VTDRVISVVKNFQKVDPSKVTVNAHFQNDLGLDSLDTVEVVMALEEEFGFEIPDNEADKINTINMAVDFIA 547
            + DRV+ V+K + K+DP K++VN+HF  DLGLDSLD VE++MA+E+EFGFEIPD +A+K+      VD+IA
Sbjct:   79 IQDRVLYVLKLYDKIDPEKLSVNSHFMKDLGLDSLDQVEIIMAMEDEFGFEIPDIDAEKLMCPQEIVDYIA 149          
BLAST of CX047505 vs. ExPASy Swiss-Prot
Match: ACPM_GORGO (Acyl carrier protein, mitochondrial OS=Gorilla gorilla gorilla GN=NDUFAB1 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.510e-17
Identity = 40/71 (56.34%), Postives = 56/71 (78.87%), Query Frame = -1
Query:  335 VTDRVISVVKNFQKVDPSKVTVNAHFQNDLGLDSLDTVEVVMALEEEFGFEIPDNEADKINTINMAVDFIA 547
            + DRV+ V+K + K+DP K++VN+HF  DLGLDSLD VE++MA+E+EFGFEIPD +A+K+      VD+IA
Sbjct:   79 IQDRVLYVLKLYDKIDPEKLSVNSHFMKDLGLDSLDQVEIIMAMEDEFGFEIPDIDAEKLMCPQEIVDYIA 149          
BLAST of CX047505 vs. ExPASy Swiss-Prot
Match: ACPM_BOVIN (Acyl carrier protein, mitochondrial OS=Bos taurus GN=NDUFAB1 PE=1 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 1.510e-17
Identity = 40/71 (56.34%), Postives = 56/71 (78.87%), Query Frame = -1
Query:  335 VTDRVISVVKNFQKVDPSKVTVNAHFQNDLGLDSLDTVEVVMALEEEFGFEIPDNEADKINTINMAVDFIA 547
            + DRV+ V+K + K+DP K++VN+HF  DLGLDSLD VE++MA+E+EFGFEIPD +A+K+      VD+IA
Sbjct:   79 IKDRVLYVLKLYDKIDPEKLSVNSHFMKDLGLDSLDQVEIIMAMEDEFGFEIPDIDAEKLMCPQEIVDYIA 149          
BLAST of CX047505 vs. ExPASy Swiss-Prot
Match: ACPM_SCHPO (Putative acyl carrier protein, mitochondrial OS=Schizosaccharomyces pombe GN=SPAC4H3.09 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.737e-17
Identity = 41/81 (50.62%), Postives = 58/81 (71.60%), Query Frame = -1
Query:  317 KSEVTDRVISVVKNFQKV-DPSKVTVNAHFQNDLGLDSLDTVEVVMALEEEFGFEIPDNEADKINTINMAVDFIASHPQAK 556
            + +   R++ VV +F K+ DP KVT  + F NDLGLDSLD VEVVMA+EEEF  +IPD +AD+I ++  A+ +I  +P+AK
Sbjct:   32 RPDAEKRILKVVSSFDKIQDPKKVTPTSTFANDLGLDSLDAVEVVMAIEEEFSIQIPDKDADEITSVGDAISYITKNPEAK 112          
BLAST of CX047505 vs. ExPASy Swiss-Prot
Match: ACP_LEUMU (Acyl carrier protein OS=Leucothrix mucor GN=acpP PE=1 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 2.180e-16
Identity = 43/75 (57.33%), Postives = 56/75 (74.67%), Query Frame = -1
Query:  329 SEVTDRVISVVKNFQKVDPSKVTVNAHFQNDLGLDSLDTVEVVMALEEEFGFEIPDNEADKINTINMAVDFIASH 553
            S++  RV +VV     VD ++VT  A F +DLG DSLDTVE+VMALEEEFG EIPD EA+KI T+ +A+D++ SH
Sbjct:    2 SDIEQRVKNVVVEQLGVDEAEVTNAASFVDDLGADSLDTVELVMALEEEFGTEIPDEEAEKITTVQLAIDYVKSH 76          
The following BLAST results are available for this feature:
BLAST of CX047505 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 397
Match NameE-valueIdentityDescription
ACPM_ARATH6.115e-2752.50Acyl carrier protein, mitochondrial OS=Arabidopsis... [more]
ACPM_NEUCR1.905e-2057.65Acyl carrier protein, mitochondrial OS=Neurospora ... [more]
ACPM_PONPY1.510e-1756.34Acyl carrier protein, mitochondrial OS=Pongo pygma... [more]
ACPM_PANTR1.510e-1756.34Acyl carrier protein, mitochondrial OS=Pan troglod... [more]
ACPM_MOUSE1.510e-1756.34Acyl carrier protein, mitochondrial OS=Mus musculu... [more]
ACPM_HUMAN1.510e-1756.34Acyl carrier protein, mitochondrial OS=Homo sapien... [more]
ACPM_GORGO1.510e-1756.34Acyl carrier protein, mitochondrial OS=Gorilla gor... [more]
ACPM_BOVIN1.510e-1756.34Acyl carrier protein, mitochondrial OS=Bos taurus ... [more]
ACPM_SCHPO5.737e-1750.62Putative acyl carrier protein, mitochondrial OS=Sc... [more]
ACP_LEUMU2.180e-1657.33Acyl carrier protein OS=Leucothrix mucor GN=acpP P... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_14E10_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-14E10-J19-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047505 ID=CX047505; Name=CX047505; organism=Citrus sinensis; type=EST; length=682bp
TTTTTTTTTTTTTTTTTGTCTCCTACATGATCTTTATTAAAATGAAAGAA
CATATATGATGAGTAGTGAAGAAATACCAGACCATTCCAATCTTCCAATT
TAATGGAAAGCATTTTCGACGCGGCAAGTCTCCCAAAAACAATACTCTTC
AAGCAGAGTTCAAATGGGGTCGGAAAACCAGAAAGGCTTTTAAAGTTTAC
TCGTTTTTTAAGGAACAAAAATTTTAGGTACCGGGATAAGAGAATTCTAA
TGCTGCTGCTAATTCTGAACATCAAAAGAGTGAAAATAGCATCGTAGGGC
TTCATAGTTTCCCCTACTTAGCCTGAGGATGAGAAGCAATGAAATCGACA
GCCATATTGATGGTATTGATCTTGTCTGCCTCATTATCTGGGATCTCGAA
TCCGAATTCTTCTTCAAGTGCCATCACGACCTCCACAGTGTCCAAACTAT
CCAACCCAAGATCATTCTGGAAATGGGCATTAACCGTAACCTTGGAAGGA
TCAACTTTCTGGAAGTTTTTAACGACGGAAATGACGCGATCGGTGACTTC
AGATTTGTCGAGGAAAGAGCCCCTGACCTCTTCCGCGAAACAGCGGCGTA
TGGAGTTGAATGAGAGAGAAAAGGGGCTAGGGTTTCGTTGCACGGTGGCC
ACGTTCACTCTCAGGTACTTTAGCAAGGCACC
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