FC921971

Overview
NameFC921971
Unique NameFC921971
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length368
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4023 contig Csv1_Contig4023:133..500. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921971 vs. ExPASy Swiss-Prot
Match: RL133_ARATH (60S ribosomal protein L13-3 OS=Arabidopsis thaliana GN=RPL13D PE=2 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 2.891e-47
Identity = 92/104 (88.46%), Postives = 98/104 (94.23%), Query Frame = 3
Query:   57 IFPRPTAGPLRPVVHGQTLKPNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLVGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQ 368
            IFPRPT+GPLRPVVHGQTLK NMK+RAG+GFTLEELK AGIPKKLAPTIG+SVDHRRKNRSL GLQSNVQRLKTYKAKLVVFPRR+R+ KAGDS PEELA ATQ
Sbjct:   44 IFPRPTSGPLRPVVHGQTLKYNMKVRAGKGFTLEELKVAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRSRQVKAGDSTPEELANATQ 147          
BLAST of FC921971 vs. ExPASy Swiss-Prot
Match: RL132_BRANA (60S ribosomal protein L13-2 OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 4.931e-47
Identity = 92/104 (88.46%), Postives = 97/104 (93.27%), Query Frame = 3
Query:   57 IFPRPTAGPLRPVVHGQTLKPNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLVGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQ 368
            IFPRPTAGPLRPVVHGQTLK NMK+R G+GFTLEELKAAGIPKKLAPTIG+S+DHRRKNRSL GLQSNVQRLKTYKAKLV+FPRRARK KAGDS  EELA ATQ
Sbjct:   44 IFPRPTAGPLRPVVHGQTLKYNMKVRTGKGFTLEELKAAGIPKKLAPTIGISLDHRRKNRSLEGLQSNVQRLKTYKAKLVIFPRRARKVKAGDSTAEELANATQ 147          
BLAST of FC921971 vs. ExPASy Swiss-Prot
Match: RL131_ARATH (60S ribosomal protein L13-1 OS=Arabidopsis thaliana GN=RPL13B PE=1 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 8.411e-47
Identity = 90/104 (86.54%), Postives = 97/104 (93.27%), Query Frame = 3
Query:   57 IFPRPTAGPLRPVVHGQTLKPNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLVGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQ 368
            IFPRPT+GPLRPVVHGQTLK NMK+R G+GFTLEELKAAGIPKKLAPTIG++VDHRRKNRSL GLQ+NVQRLKTYK KLV+FPRRARK KAGDS PEELA ATQ
Sbjct:   44 IFPRPTSGPLRPVVHGQTLKYNMKVRTGKGFTLEELKAAGIPKKLAPTIGIAVDHRRKNRSLEGLQTNVQRLKTYKTKLVIFPRRARKVKAGDSTPEELANATQ 147          
BLAST of FC921971 vs. ExPASy Swiss-Prot
Match: RL131_BRANA (60S ribosomal protein L13-1 OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 1.099e-46
Identity = 91/104 (87.50%), Postives = 97/104 (93.27%), Query Frame = 3
Query:   57 IFPRPTAGPLRPVVHGQTLKPNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLVGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQ 368
            IFPRPTAGPLRPVVHGQTLK NMK+R G+GFTLEELK+AGIPKKLAPTIG++VDHRRKNRSL GLQSNVQRLKTYKAKLV+FPRRARK KAGDS  EELA ATQ
Sbjct:   44 IFPRPTAGPLRPVVHGQTLKYNMKVRTGKGFTLEELKSAGIPKKLAPTIGIAVDHRRKNRSLEGLQSNVQRLKTYKAKLVIFPRRARKVKAGDSTAEELANATQ 147          
BLAST of FC921971 vs. ExPASy Swiss-Prot
Match: RL132_ARATH (Putative 60S ribosomal protein L13-2 OS=Arabidopsis thaliana GN=RPL13C PE=3 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 7.368e-43
Identity = 85/104 (81.73%), Postives = 92/104 (88.46%), Query Frame = 3
Query:   57 IFPRPTAGPLRPVVHGQTLKPNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLVGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQ 368
            IFPRPTAGP+RPVVH QTL  NMK+RAG+GFTLEELKAAGIPKKLAPTIG+SVDH RKNRSL G Q+NVQRLKTYKAKLV+FPR AR  K GDSA +ELA ATQ
Sbjct:   44 IFPRPTAGPIRPVVHAQTLTYNMKVRAGKGFTLEELKAAGIPKKLAPTIGISVDHHRKNRSLEGFQTNVQRLKTYKAKLVIFPRCARTVKVGDSAQQELANATQ 147          
BLAST of FC921971 vs. ExPASy Swiss-Prot
Match: RL13_TOBAC (60S ribosomal protein L13 OS=Nicotiana tabacum GN=RPL13 PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 3.315e-35
Identity = 73/104 (70.19%), Postives = 86/104 (82.69%), Query Frame = 3
Query:   57 IFPRPTAGPLRPVVHGQTLKPNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLVGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQ 368
            I PRPTAG LRP+VHGQTLK NMK+R+GRGF+LEELKAAGIPKKLAPTIG++VDHRR+NRSL GLQ+NVQRL+  + +LVVFPRRA + +     P    TATQ
Sbjct:   40 ISPRPTAGTLRPIVHGQTLKYNMKVRSGRGFSLEELKAAGIPKKLAPTIGIAVDHRRRNRSLEGLQTNVQRLEDLQGQLVVFPRRASRSRLVILPPRNCLTATQ 143          
BLAST of FC921971 vs. ExPASy Swiss-Prot
Match: RL13_DANRE (60S ribosomal protein L13 OS=Danio rerio GN=rpl13 PE=2 SV=3)

HSP 1 Score: 136.346 bits (342), Expect = 4.481e-32
Identity = 69/104 (66.35%), Postives = 82/104 (78.85%), Query Frame = 3
Query:   57 IFPRPTAGPLRPVVHGQTLKPNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLVGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQ 368
            I PRP +GPLRPVV   T++ + K+RAGRGFTLEELKAAGI KK+A TIG+SVD RR+NRS   LQ+NVQRLK Y+ KL++FPR+A K K GDS  EEL  ATQ
Sbjct:   46 IAPRPVSGPLRPVVRCPTIRYHTKVRAGRGFTLEELKAAGINKKVARTIGISVDSRRRNRSTESLQANVQRLKEYRTKLIIFPRKAAKPKKGDSTEEELKMATQ 149          
BLAST of FC921971 vs. ExPASy Swiss-Prot
Match: RL13_CHLSW (60S ribosomal protein L13 OS=Chlamydomonas sp. (strain W80) GN=RPL13 PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 2.224e-31
Identity = 65/103 (63.11%), Postives = 81/103 (78.64%), Query Frame = 3
Query:   60 FPRPTAGPLRPVVHGQTLKPNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLVGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQ 368
            FPRP AG L+P+V  QT+K N K R GRGFTLEELK AGIP K APT+G++VDHRRKNRSL  LQ+NVQRLKTY+A LV+FPR  +K KA +++  + + A+Q
Sbjct:   46 FPRPVAGSLKPIVRCQTVKYNTKQRLGRGFTLEELKEAGIPAKFAPTVGIAVDHRRKNRSLETLQANVQRLKTYRASLVIFPRNMKKPKAFEASAADCSAASQ 148          
BLAST of FC921971 vs. ExPASy Swiss-Prot
Match: RL13_CHICK (60S ribosomal protein L13 OS=Gallus gallus GN=RPL13 PE=2 SV=2)

HSP 1 Score: 128.257 bits (321), Expect = 1.220e-29
Identity = 63/104 (60.58%), Postives = 81/104 (77.88%), Query Frame = 3
Query:   57 IFPRPTAGPLRPVVHGQTLKPNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLVGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQ 368
            I PRP AGP+RP+V   T++ + K+RAGRGF+LEELK AGI K+ A TIG+SVD RR+N+S   LQ+NVQRLK Y++KL++FPR+    K GDS+PEEL  ATQ
Sbjct:   46 IAPRPVAGPIRPIVRCPTVRYHKKVRAGRGFSLEELKLAGINKRFARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSPEELKMATQ 149          
BLAST of FC921971 vs. ExPASy Swiss-Prot
Match: RL13_ICTPU (60S ribosomal protein L13 OS=Ictalurus punctatus GN=rpl13 PE=2 SV=3)

HSP 1 Score: 127.872 bits (320), Expect = 1.594e-29
Identity = 64/104 (61.54%), Postives = 79/104 (75.96%), Query Frame = 3
Query:   57 IFPRPTAGPLRPVVHGQTLKPNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLVGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQ 368
            I PRP AGPLRP+V   T++ N K+RAGRGFTLEELKAAGI K++A TIG++VD RR+NRS   L  NVQRLK Y++KL++FPR+    K GDS  EE+  ATQ
Sbjct:   46 IAPRPVAGPLRPIVRCPTVRYNTKVRAGRGFTLEELKAAGINKRVARTIGIAVDPRRRNRSTESLHVNVQRLKVYRSKLILFPRKVSAPKKGDSTEEEVKMATQ 149          
The following BLAST results are available for this feature:
BLAST of FC921971 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
RL133_ARATH2.891e-4788.4660S ribosomal protein L13-3 OS=Arabidopsis thalian... [more]
RL132_BRANA4.931e-4788.4660S ribosomal protein L13-2 OS=Brassica napus PE=2... [more]
RL131_ARATH8.411e-4786.5460S ribosomal protein L13-1 OS=Arabidopsis thalian... [more]
RL131_BRANA1.099e-4687.5060S ribosomal protein L13-1 OS=Brassica napus PE=2... [more]
RL132_ARATH7.368e-4381.73Putative 60S ribosomal protein L13-2 OS=Arabidopsi... [more]
RL13_TOBAC3.315e-3570.1960S ribosomal protein L13 OS=Nicotiana tabacum GN=... [more]
RL13_DANRE4.481e-3266.3560S ribosomal protein L13 OS=Danio rerio GN=rpl13 ... [more]
RL13_CHLSW2.224e-3163.1160S ribosomal protein L13 OS=Chlamydomonas sp. (st... [more]
RL13_CHICK1.220e-2960.5860S ribosomal protein L13 OS=Gallus gallus GN=RPL1... [more]
RL13_ICTPU1.594e-2961.5460S ribosomal protein L13 OS=Ictalurus punctatus G... [more]

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Properties
Property NameValue
Genbank descriptionC06056B01T7 RindPdigS Citrus sinensis cDNA clone C06056B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921971 ID=FC921971; Name=FC921971; organism=Citrus sinensis; type=EST; length=368bp
CGCGGGCTGCTCGCAAAAATCGACGACGAGTCGCTCGTCAAAACAAGGCC
GTTAAAATCTTCCCTCGCCCTACTGCTGGGCCGCTTCGTCCCGTCGTTCA
TGGCCAGACTTTGAAACCCAACATGAAATTAAGGGCTGGCAGAGGCTTTA
CTCTTGAGGAACTCAAGGCTGCTGGAATTCCCAAGAAACTGGCTCCGACA
ATTGGTGTTTCAGTCGATCATCGACGCAAGAACCGTTCTCTTGTGGGTCT
TCAATCTAATGTTCAGAGGCTCAAGACTTACAAGGCTAAGTTGGTTGTTT
TCCCAAGACGTGCTCGCAAGTTTAAGGCTGGTGATTCGGCTCCTGAGGAA
TTGGCAACAGCAACTCAA
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