FC921971
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC921971 vs. ExPASy Swiss-Prot
Match: RL133_ARATH (60S ribosomal protein L13-3 OS=Arabidopsis thaliana GN=RPL13D PE=2 SV=1) HSP 1 Score: 186.808 bits (473), Expect = 2.891e-47 Identity = 92/104 (88.46%), Postives = 98/104 (94.23%), Query Frame = 3 Query: 57 IFPRPTAGPLRPVVHGQTLKPNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLVGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQ 368 IFPRPT+GPLRPVVHGQTLK NMK+RAG+GFTLEELK AGIPKKLAPTIG+SVDHRRKNRSL GLQSNVQRLKTYKAKLVVFPRR+R+ KAGDS PEELA ATQ Sbjct: 44 IFPRPTSGPLRPVVHGQTLKYNMKVRAGKGFTLEELKVAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRSRQVKAGDSTPEELANATQ 147
BLAST of FC921971 vs. ExPASy Swiss-Prot
Match: RL132_BRANA (60S ribosomal protein L13-2 OS=Brassica napus PE=2 SV=1) HSP 1 Score: 186.037 bits (471), Expect = 4.931e-47 Identity = 92/104 (88.46%), Postives = 97/104 (93.27%), Query Frame = 3 Query: 57 IFPRPTAGPLRPVVHGQTLKPNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLVGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQ 368 IFPRPTAGPLRPVVHGQTLK NMK+R G+GFTLEELKAAGIPKKLAPTIG+S+DHRRKNRSL GLQSNVQRLKTYKAKLV+FPRRARK KAGDS EELA ATQ Sbjct: 44 IFPRPTAGPLRPVVHGQTLKYNMKVRTGKGFTLEELKAAGIPKKLAPTIGISLDHRRKNRSLEGLQSNVQRLKTYKAKLVIFPRRARKVKAGDSTAEELANATQ 147
BLAST of FC921971 vs. ExPASy Swiss-Prot
Match: RL131_ARATH (60S ribosomal protein L13-1 OS=Arabidopsis thaliana GN=RPL13B PE=1 SV=1) HSP 1 Score: 185.267 bits (469), Expect = 8.411e-47 Identity = 90/104 (86.54%), Postives = 97/104 (93.27%), Query Frame = 3 Query: 57 IFPRPTAGPLRPVVHGQTLKPNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLVGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQ 368 IFPRPT+GPLRPVVHGQTLK NMK+R G+GFTLEELKAAGIPKKLAPTIG++VDHRRKNRSL GLQ+NVQRLKTYK KLV+FPRRARK KAGDS PEELA ATQ Sbjct: 44 IFPRPTSGPLRPVVHGQTLKYNMKVRTGKGFTLEELKAAGIPKKLAPTIGIAVDHRRKNRSLEGLQTNVQRLKTYKTKLVIFPRRARKVKAGDSTPEELANATQ 147
BLAST of FC921971 vs. ExPASy Swiss-Prot
Match: RL131_BRANA (60S ribosomal protein L13-1 OS=Brassica napus PE=2 SV=1) HSP 1 Score: 184.882 bits (468), Expect = 1.099e-46 Identity = 91/104 (87.50%), Postives = 97/104 (93.27%), Query Frame = 3 Query: 57 IFPRPTAGPLRPVVHGQTLKPNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLVGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQ 368 IFPRPTAGPLRPVVHGQTLK NMK+R G+GFTLEELK+AGIPKKLAPTIG++VDHRRKNRSL GLQSNVQRLKTYKAKLV+FPRRARK KAGDS EELA ATQ Sbjct: 44 IFPRPTAGPLRPVVHGQTLKYNMKVRTGKGFTLEELKSAGIPKKLAPTIGIAVDHRRKNRSLEGLQSNVQRLKTYKAKLVIFPRRARKVKAGDSTAEELANATQ 147
BLAST of FC921971 vs. ExPASy Swiss-Prot
Match: RL132_ARATH (Putative 60S ribosomal protein L13-2 OS=Arabidopsis thaliana GN=RPL13C PE=3 SV=1) HSP 1 Score: 172.17 bits (435), Expect = 7.368e-43 Identity = 85/104 (81.73%), Postives = 92/104 (88.46%), Query Frame = 3 Query: 57 IFPRPTAGPLRPVVHGQTLKPNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLVGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQ 368 IFPRPTAGP+RPVVH QTL NMK+RAG+GFTLEELKAAGIPKKLAPTIG+SVDH RKNRSL G Q+NVQRLKTYKAKLV+FPR AR K GDSA +ELA ATQ Sbjct: 44 IFPRPTAGPIRPVVHAQTLTYNMKVRAGKGFTLEELKAAGIPKKLAPTIGISVDHHRKNRSLEGFQTNVQRLKTYKAKLVIFPRCARTVKVGDSAQQELANATQ 147
BLAST of FC921971 vs. ExPASy Swiss-Prot
Match: RL13_TOBAC (60S ribosomal protein L13 OS=Nicotiana tabacum GN=RPL13 PE=2 SV=1) HSP 1 Score: 146.747 bits (369), Expect = 3.315e-35 Identity = 73/104 (70.19%), Postives = 86/104 (82.69%), Query Frame = 3 Query: 57 IFPRPTAGPLRPVVHGQTLKPNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLVGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQ 368 I PRPTAG LRP+VHGQTLK NMK+R+GRGF+LEELKAAGIPKKLAPTIG++VDHRR+NRSL GLQ+NVQRL+ + +LVVFPRRA + + P TATQ Sbjct: 40 ISPRPTAGTLRPIVHGQTLKYNMKVRSGRGFSLEELKAAGIPKKLAPTIGIAVDHRRRNRSLEGLQTNVQRLEDLQGQLVVFPRRASRSRLVILPPRNCLTATQ 143
BLAST of FC921971 vs. ExPASy Swiss-Prot
Match: RL13_DANRE (60S ribosomal protein L13 OS=Danio rerio GN=rpl13 PE=2 SV=3) HSP 1 Score: 136.346 bits (342), Expect = 4.481e-32 Identity = 69/104 (66.35%), Postives = 82/104 (78.85%), Query Frame = 3 Query: 57 IFPRPTAGPLRPVVHGQTLKPNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLVGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQ 368 I PRP +GPLRPVV T++ + K+RAGRGFTLEELKAAGI KK+A TIG+SVD RR+NRS LQ+NVQRLK Y+ KL++FPR+A K K GDS EEL ATQ Sbjct: 46 IAPRPVSGPLRPVVRCPTIRYHTKVRAGRGFTLEELKAAGINKKVARTIGISVDSRRRNRSTESLQANVQRLKEYRTKLIIFPRKAAKPKKGDSTEEELKMATQ 149
BLAST of FC921971 vs. ExPASy Swiss-Prot
Match: RL13_CHLSW (60S ribosomal protein L13 OS=Chlamydomonas sp. (strain W80) GN=RPL13 PE=2 SV=1) HSP 1 Score: 134.035 bits (336), Expect = 2.224e-31 Identity = 65/103 (63.11%), Postives = 81/103 (78.64%), Query Frame = 3 Query: 60 FPRPTAGPLRPVVHGQTLKPNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLVGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQ 368 FPRP AG L+P+V QT+K N K R GRGFTLEELK AGIP K APT+G++VDHRRKNRSL LQ+NVQRLKTY+A LV+FPR +K KA +++ + + A+Q Sbjct: 46 FPRPVAGSLKPIVRCQTVKYNTKQRLGRGFTLEELKEAGIPAKFAPTVGIAVDHRRKNRSLETLQANVQRLKTYRASLVIFPRNMKKPKAFEASAADCSAASQ 148
BLAST of FC921971 vs. ExPASy Swiss-Prot
Match: RL13_CHICK (60S ribosomal protein L13 OS=Gallus gallus GN=RPL13 PE=2 SV=2) HSP 1 Score: 128.257 bits (321), Expect = 1.220e-29 Identity = 63/104 (60.58%), Postives = 81/104 (77.88%), Query Frame = 3 Query: 57 IFPRPTAGPLRPVVHGQTLKPNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLVGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQ 368 I PRP AGP+RP+V T++ + K+RAGRGF+LEELK AGI K+ A TIG+SVD RR+N+S LQ+NVQRLK Y++KL++FPR+ K GDS+PEEL ATQ Sbjct: 46 IAPRPVAGPIRPIVRCPTVRYHKKVRAGRGFSLEELKLAGINKRFARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSPEELKMATQ 149
BLAST of FC921971 vs. ExPASy Swiss-Prot
Match: RL13_ICTPU (60S ribosomal protein L13 OS=Ictalurus punctatus GN=rpl13 PE=2 SV=3) HSP 1 Score: 127.872 bits (320), Expect = 1.594e-29 Identity = 64/104 (61.54%), Postives = 79/104 (75.96%), Query Frame = 3 Query: 57 IFPRPTAGPLRPVVHGQTLKPNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLVGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQ 368 I PRP AGPLRP+V T++ N K+RAGRGFTLEELKAAGI K++A TIG++VD RR+NRS L NVQRLK Y++KL++FPR+ K GDS EE+ ATQ Sbjct: 46 IAPRPVAGPLRPIVRCPTVRYNTKVRAGRGFTLEELKAAGINKRVARTIGIAVDPRRRNRSTESLHVNVQRLKVYRSKLILFPRKVSAPKKGDSTEEEVKMATQ 149 The following BLAST results are available for this feature:
BLAST of FC921971 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 26
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Sequences
The
following sequences are available for this feature:
EST sequence >FC921971 ID=FC921971; Name=FC921971; organism=Citrus sinensis; type=EST; length=368bpback to top |