CX047503

Overview
NameCX047503
Unique NameCX047503
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length724
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX047503 vs. ExPASy Swiss-Prot
Match: YC60L_SYNY3 (Ycf60-like protein OS=Synechocystis sp. (strain PCC 6803) GN=sll1737 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.622e-12
Identity = 46/163 (28.22%), Postives = 72/163 (44.17%), Query Frame = 1 
Query:  169 SKNSTTPATDRIISAAAYTLPFFNSLQYGRYLFMQFPNXXXXXXXXXXXXXXYRXXXXXXXXXXXXXYLGVVRNPSLSQYVRFNTMQALALDVL-----LVVPSLLTRIFNPGRAGIGFKLMIWGHNAIFVFTCFCFVYGFVSSLLGKTPYLPFIADAAGRQV 642
            + NST    DR  SA  Y +P  ++  +G +L  QFP               Y              ++ VVRN ++S ++RFN MQA+ + +L     L+V  ++  +F  G            +N  F+    C  +G V S+LG+   +P I+DAA  QV
Sbjct:    2 ASNSTADGKDRFFSALIYVIPLIDAFMFGGFLLQQFPVLQIIYLPIMPLLQFYYQFPFASFIIFIVLFMAVVRNNNISHFIRFNAMQAILIGILLSLFGLIVAYVIQPVFGQGLVTETL------YNFAFLGALACGFFGIVQSVLGRYAEIPTISDAAYSQV 158
The following BLAST results are available for this feature:
BLAST of CX047503 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
YC60L_SYNY31.622e-1228.22Ycf60-like protein OS=Synechocystis sp. (strain PC... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS09_14E09_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-14E09-J17-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047503 ID=CX047503; Name=CX047503; organism=Citrus sinensis; type=EST; length=724bp
CTTGAGCCCTAATTCATCAAACTCGCTATGGCTTCTCCTCTCAGTCTCTG
TCTCTCTTTGCACTCCACTCCAAAACACTTAACCTCTAAATTCACCCCAC
GTTTGCCTTCCCTCTTCGGATCAACGGCCACGTTCCCAAACCCTATACCC
AAAACCGCCATCACTGCCTCCAAAAACTCGACGACTCCGGCAACCGACCG
CATAATCTCTGCCGCCGCCTATACTCTCCCCTTCTTCAACTCCCTCCAGT
ACGGCCGCTACCTCTTCATGCAATTCCCCAATCTGGGTCTCCTCTTCGAG
CCGGTACTCCCCTTATTGTCCCTCTACAGATCCGTCCCTTTCGCCAGCTT
CGTTGCTTTCTTCGCGTTCTATCTGGGCGTCGTCAGAAACCCTAGTCTCA
GCCAGTACGTGAGGTTTAATACGATGCAGGCGCTCGCTTTGGACGTTCTT
TTGGTGGTGCCTTCGCTCTTGACCCGGATTTTCAACCCGGGTCGGGCCGG
CATCGGGTTCAAGTTGATGATTTGGGGGCATAATGCGATTTTTGTTTTTA
CTTGTTTTTGTTTTGTTTATGGTTTTGTTTCTTCTTTGTTGGGAAAGACT
CCGTACTTGCCGTTTATTGCTGATGCCGCCGGTAGGCAAGTTTAGGCTGT
ACCTTGCTGTTGCTTTTGCTTTTTTTTTTTTTTTCTTTTAATGCCATTTT
GGAAACAACGTACAACCCGTTGAA
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