CX047498

Overview
NameCX047498
Unique NameCX047498
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length819
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX047498 vs. ExPASy Swiss-Prot
Match: IF4A1_ARATH (Eukaryotic initiation factor 4A-1 OS=Arabidopsis thaliana GN=TIF4A-1 PE=1 SV=1)

HSP 1 Score: 394.815 bits (1013), Expect = 2.996e-109
Identity = 197/201 (98.01%), Postives = 201/201 (100.00%), Query Frame = 3 
Query:    3 KVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 605
            K+QVGVFSATMPPEALEITRKFM+KPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVIN+DLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVV+EELPSNVADLL
Sbjct:  212 KIQVGVFSATMPPEALEITRKFMSKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVVEELPSNVADLL 412
[Close]
BLAST of CX047498 vs. ExPASy Swiss-Prot
Match: IF4A1_ORYSJ (Eukaryotic initiation factor 4A-1 OS=Oryza sativa subsp. japonica GN=Os06g0701100 PE=2 SV=2)

HSP 1 Score: 393.66 bits (1010), Expect = 6.675e-109
Identity = 196/201 (97.51%), Postives = 200/201 (99.50%), Query Frame = 3 
Query:    3 KVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 605
            K+QVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKL+TLCDLYETLAITQSVIFVNTRRKVDWLTDKMR RDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQ+FYNVVIEELP+NVADLL
Sbjct:  214 KIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDKMRGRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQRFYNVVIEELPANVADLL 414
[Close]
BLAST of CX047498 vs. ExPASy Swiss-Prot
Match: IF4A8_TOBAC (Eukaryotic initiation factor 4A-8 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 392.889 bits (1008), Expect = 1.139e-108
Identity = 196/201 (97.51%), Postives = 200/201 (99.50%), Query Frame = 3 
Query:    3 KVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 605
            KVQVGVFSATMPPEAL+ITRKFMNKPVRILVKRDELTLEGIKQFYVNV+KEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMR+RDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVT DDERMLFDIQKFYNV+IEELPSNVADLL
Sbjct:  213 KVQVGVFSATMPPEALDITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRTRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTTDDERMLFDIQKFYNVIIEELPSNVADLL 413
[Close]
BLAST of CX047498 vs. ExPASy Swiss-Prot
Match: IF4A3_ORYSJ (Eukaryotic initiation factor 4A-3 OS=Oryza sativa subsp. japonica GN=Os02g0146600 PE=2 SV=1)

HSP 1 Score: 392.504 bits (1007), Expect = 1.487e-108
Identity = 195/201 (97.01%), Postives = 200/201 (99.50%), Query Frame = 3 
Query:    3 KVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 605
            K+QVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKE+WKL+TLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQ+FYNV IEELP+NVADLL
Sbjct:  214 KIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEDWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQRFYNVTIEELPANVADLL 414
[Close]
BLAST of CX047498 vs. ExPASy Swiss-Prot
Match: IF4A2_NICPL (Eukaryotic initiation factor 4A-2 OS=Nicotiana plumbaginifolia PE=2 SV=1)

HSP 1 Score: 392.119 bits (1006), Expect = 1.942e-108
Identity = 196/201 (97.51%), Postives = 200/201 (99.50%), Query Frame = 3 
Query:    3 KVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 605
            K+QVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNV+KEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAIN VT+DDERMLFDIQKFYNVVIEELP+NVADLL
Sbjct:  213 KIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINSVTKDDERMLFDIQKFYNVVIEELPANVADLL 413
[Close]
BLAST of CX047498 vs. ExPASy Swiss-Prot
Match: IF4A_WHEAT (Eukaryotic initiation factor 4A OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 390.963 bits (1003), Expect = 4.327e-108
Identity = 195/201 (97.01%), Postives = 199/201 (99.00%), Query Frame = 3 
Query:    3 KVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 605
            K+QVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKL+TLCDLYETLAITQSVIFVNTRRKVDWLTDKMR RDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENY HRIGRSGRFGRKGVAINFVTR+DERMLFDIQKFYNVVIEELP+NVADLL
Sbjct:  214 KIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDKMRGRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYQHRIGRSGRFGRKGVAINFVTREDERMLFDIQKFYNVVIEELPANVADLL 414
[Close]
BLAST of CX047498 vs. ExPASy Swiss-Prot
Match: IF414_TOBAC (Eukaryotic initiation factor 4A-14 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 390.963 bits (1003), Expect = 4.327e-108
Identity = 194/201 (96.52%), Postives = 201/201 (100.00%), Query Frame = 3 
Query:    3 KVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 605
            K+QVGVFSATMPPEALEITRKFM+KPVRILVKRD++TLEGIKQFYVNV+KEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVT+DDERMLFDIQKFYNVVIEELP+NVADLL
Sbjct:  213 KIQVGVFSATMPPEALEITRKFMSKPVRILVKRDDVTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDERMLFDIQKFYNVVIEELPANVADLL 413
[Close]
BLAST of CX047498 vs. ExPASy Swiss-Prot
Match: IF4A6_TOBAC (Eukaryotic initiation factor 4A-6 (Fragment) OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 390.578 bits (1002), Expect = 5.651e-108
Identity = 193/200 (96.50%), Postives = 199/200 (99.50%), Query Frame = 3 
Query:    3 KVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADL 602
            K+QVG+FSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNV+KEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMR RDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGV+INFVT+DDERMLFDIQKFYNVVIEELP+NVADL
Sbjct:   54 KIQVGIFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRGRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVSINFVTKDDERMLFDIQKFYNVVIEELPANVADL 253
[Close]
BLAST of CX047498 vs. ExPASy Swiss-Prot
Match: IF411_TOBAC (Eukaryotic initiation factor 4A-11 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 390.578 bits (1002), Expect = 5.651e-108
Identity = 194/201 (96.52%), Postives = 199/201 (99.00%), Query Frame = 3 
Query:    3 KVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 605
            K+QVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNV+KEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMR RDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIG SGRFGRKGV+INFVT+DDERMLFDIQKFYNVVIEELP+NVADLL
Sbjct:  213 KIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRGRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGHSGRFGRKGVSINFVTKDDERMLFDIQKFYNVVIEELPANVADLL 413
[Close]
BLAST of CX047498 vs. ExPASy Swiss-Prot
Match: IF4A2_ARATH (Eukaryotic initiation factor 4A-2 OS=Arabidopsis thaliana GN=TIF4A-2 PE=1 SV=1)

HSP 1 Score: 389.808 bits (1000), Expect = 9.639e-108
Identity = 194/201 (96.52%), Postives = 200/201 (99.50%), Query Frame = 3 
Query:    3 KVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 605
            K+QVGVFSATMPPEALEITRKFM+KPVRILVKRDELTLEGIKQFYVNVEKE+WKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVIN+DLPTQPENYLHRIGRSGRFGRKGVAINFVT DD+RMLFDIQKFYNVV+EELPSNVADLL
Sbjct:  212 KIQVGVFSATMPPEALEITRKFMSKPVRILVKRDELTLEGIKQFYVNVEKEDWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVTLDDQRMLFDIQKFYNVVVEELPSNVADLL 412
The following BLAST results are available for this feature:
BLAST of CX047498 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
IF4A1_ARATH2.996e-10998.01Eukaryotic initiation factor 4A-1 OS=Arabidopsis t... [more]
IF4A1_ORYSJ6.675e-10997.51Eukaryotic initiation factor 4A-1 OS=Oryza sativa ... [more]
IF4A8_TOBAC1.139e-10897.51Eukaryotic initiation factor 4A-8 OS=Nicotiana tab... [more]
IF4A3_ORYSJ1.487e-10897.01Eukaryotic initiation factor 4A-3 OS=Oryza sativa ... [more]
IF4A2_NICPL1.942e-10897.51Eukaryotic initiation factor 4A-2 OS=Nicotiana plu... [more]
IF4A_WHEAT4.327e-10897.01Eukaryotic initiation factor 4A OS=Triticum aestiv... [more]
IF414_TOBAC4.327e-10896.52Eukaryotic initiation factor 4A-14 OS=Nicotiana ta... [more]
IF4A6_TOBAC5.651e-10896.50Eukaryotic initiation factor 4A-6 (Fragment) OS=Ni... [more]
IF411_TOBAC5.651e-10896.52Eukaryotic initiation factor 4A-11 OS=Nicotiana ta... [more]
IF4A2_ARATH9.639e-10896.52Eukaryotic initiation factor 4A-2 OS=Arabidopsis t... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_14E06_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-14E06-J11-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047498 ID=CX047498; Name=CX047498; organism=Citrus sinensis; type=EST; length=819bp
CTAAAGTTCAGGTGGGGGTTTTCTCTGCTACAATGCCTCCTGAGGCCTTG
GAGATTACAAGGAAGTTTATGAACAAGCCTGTGAGAATCTTGGTTAAACG
TGATGAACTCACCCTTGAGGGTATCAAGCAGTTTTATGTCAATGTTGAGA
AGGAAGAATGGAAGCTTGAAACACTCTGTGATCTTTATGAGACTCTGGCC
ATAACCCAGAGTGTCATCTTTGTGAACACTCGGCGAAAGGTCGACTGGCT
TACTGACAAGATGCGAAGCCGTGACCATACAGTCTCTGCCACTCATGGGG
ACATGGATCAGAACACCCGAGATATCATTATGCGTGAATTTCGCTCTGGT
TCTTCTCGTGTTCTCATCACCACTGATCTGTTGGCTCGTGGTATTGATGT
GCAGCAAGTTTCACTTGTCATAAATTATGATCTGCCGACTCAACCAGAAA
ACTACCTTCACCGTATTGGACGAAGTGGTCGATTTGGAAGAAAGGGTGTT
GCCATTAATTTTGTGACAAGGGATGATGAGAGAATGCTTTTTGATATTCA
AAAGTTCTATAACGTGGTCATTGAGGAGCTGCCTTCAAATGTTGCTGACC
TTCTTTGAGGAGGTTCTGTTTTTTGTAAGTTTGTCGAGGCAAGAAGGGGT
TTCCTGATTTTGCAAGTACTATTTAATGTGGTGGATATTTTCTCCCCTTT
TTTTTTTTTTTTTGGTTTCTTCTTCCTTTCCGTCTAGTGTCTTAAATTAA
TGTTGTTCTCAAACATATCCGACCATTTAATCATATGGGTCATGCACATT
TGCAAGCTGCACAAAAAAA
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