CX047490

Overview
NameCX047490
Unique NameCX047490
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length761
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047490 vs. ExPASy Swiss-Prot
Match: ISAM2_ARATH (Iron-sulfur assembly protein IscA-like 2, mitochondrial OS=Arabidopsis thaliana GN=At5g03905 PE=2 SV=2)

HSP 1 Score: 178.718 bits (452), Expect = 3.001e-44
Identity = 87/115 (75.65%), Postives = 100/115 (86.96%), Query Frame = -3
Query:  415 SPSLDSIHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGVKLVVDNISYDFVKGATVDYVEELIRSAFVVSTNPSAVGGCSCKSSFMVK 759
            S S D +H++DN I+RMKELQ+SE    K MLRLGVETGGCSGFQY F+LD + NPDDR+FEK+GVKLVVDN+SYD VKGAT+DY EELIR+AFVV+ NPSAVGGCSCKSSFMVK
Sbjct:   45 SSSNDVVHLSDNCIRRMKELQSSEPE--KKMLRLGVETGGCSGFQYKFELDNRTNPDDRVFEKNGVKLVVDNVSYDLVKGATIDYEEELIRAAFVVAVNPSAVGGCSCKSSFMVK 157          
BLAST of CX047490 vs. ExPASy Swiss-Prot
Match: ISCA2_BOVIN (Iron-sulfur cluster assembly 2 homolog, mitochondrial OS=Bos taurus GN=ISCA2 PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 4.353e-27
Identity = 62/109 (56.88%), Postives = 77/109 (70.64%), Query Frame = -3
Query:  415 IHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGVKLVVDNISYDFVKGATVDYVEELIRSAFVVSTNPSAVGGCSCKSSFMVK 741
            IH+TD+ ++R+ E+     ++    LRL VE GGCSGFQY F LD  INPDDR+FEK G ++VVD+ S  FVKGA VD+ +ELIRS+F V  NP A  GCSC SSF VK
Sbjct:   48 IHLTDSCVQRLLEI-----TEGSEFLRLEVEGGGCSGFQYKFSLDTVINPDDRVFEKGGARVVVDSDSLAFVKGAHVDFSQELIRSSFQVLNNPQAQQGCSCGSSFSVK 151          
BLAST of CX047490 vs. ExPASy Swiss-Prot
Match: ISCA2_MOUSE (Iron-sulfur cluster assembly 2 homolog, mitochondrial OS=Mus musculus GN=Isca2 PE=2 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 8.210e-26
Identity = 60/109 (55.05%), Postives = 76/109 (69.72%), Query Frame = -3
Query:  415 IHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGVKLVVDNISYDFVKGATVDYVEELIRSAFVVSTNPSAVGGCSCKSSFMVK 741
            I +TD+ ++R+ E+     ++    LRL VE GGCSGFQY F LD  INPDDR+FE+ G ++VVD+ S  FVKGA VD+ +ELIRS+F V  NP A  GCSC SSF VK
Sbjct:   50 IRLTDSCVQRLLEI-----TEGSEFLRLQVEGGGCSGFQYKFSLDTVINPDDRVFEQGGARVVVDSDSLAFVKGAQVDFSQELIRSSFQVLNNPQAQQGCSCGSSFSVK 153          
BLAST of CX047490 vs. ExPASy Swiss-Prot
Match: ISCA2_PONAB (Iron-sulfur cluster assembly 2 homolog, mitochondrial OS=Pongo abelii GN=ISCA2 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.072e-25
Identity = 59/109 (54.13%), Postives = 76/109 (69.72%), Query Frame = -3
Query:  415 IHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGVKLVVDNISYDFVKGATVDYVEELIRSAFVVSTNPSAVGGCSCKSSFMVK 741
            I +TD+ ++R+ E+     ++    LRL VE GGCSGFQY F LD  INPDDR+FE+ G ++VVD+ S  FVKGA VD+ +ELIRS+F V  NP A  GCSC SSF +K
Sbjct:   50 IRLTDSCVQRLLEI-----TEGSEFLRLQVEGGGCSGFQYKFSLDTVINPDDRVFEQGGARVVVDSDSLAFVKGAQVDFSQELIRSSFQVLNNPQAQQGCSCGSSFSIK 153          
BLAST of CX047490 vs. ExPASy Swiss-Prot
Match: ISCA2_HUMAN (Iron-sulfur cluster assembly 2 homolog, mitochondrial OS=Homo sapiens GN=ISCA2 PE=1 SV=2)

HSP 1 Score: 117.087 bits (292), Expect = 1.072e-25
Identity = 59/109 (54.13%), Postives = 76/109 (69.72%), Query Frame = -3
Query:  415 IHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGVKLVVDNISYDFVKGATVDYVEELIRSAFVVSTNPSAVGGCSCKSSFMVK 741
            I +TD+ ++R+ E+     ++    LRL VE GGCSGFQY F LD  INPDDR+FE+ G ++VVD+ S  FVKGA VD+ +ELIRS+F V  NP A  GCSC SSF +K
Sbjct:   50 IRLTDSCVQRLLEI-----TEGSEFLRLQVEGGGCSGFQYKFSLDTVINPDDRVFEQGGARVVVDSDSLAFVKGAQVDFSQELIRSSFQVLNNPQAQQGCSCGSSFSIK 153          
BLAST of CX047490 vs. ExPASy Swiss-Prot
Match: ERPA_MARAV (Iron-sulfur cluster insertion protein erpA OS=Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=erpA PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.558e-19
Identity = 52/109 (47.71%), Postives = 69/109 (63.30%), Query Frame = -3
Query:  418 IHMTDNFIKRMKEL-QASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGVKLVVDNISYDFVKGATVDYVEELIRSAFVVSTNPSAVGGCSCKSSFMV 741
            +  TDN + +++EL +  E  D K  LR+ V  GGCSGFQY F  D     DD + E+DGVKL+VD++SY ++ GAT+DY E L  S FVV  NP+A   C C SSF +
Sbjct:    5 LFFTDNAVAKVRELIEEEENPDLK--LRVFVTGGGCSGFQYGFSFDESQEEDDTVIERDGVKLLVDSMSYQYLVGATIDYQEGLQGSQFVVQ-NPNASSTCGCGSSFSI 110          
BLAST of CX047490 vs. ExPASy Swiss-Prot
Match: ERPA_HAHCH (Iron-sulfur cluster insertion protein erpA OS=Hahella chejuensis (strain KCTC 2396) GN=erpA PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.363e-19
Identity = 52/108 (48.15%), Postives = 68/108 (62.96%), Query Frame = -3
Query:  418 IHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGVKLVVDNISYDFVKGATVDYVEELIRSAFVVSTNPSAVGGCSCKSSFMV 741
            I  TDN   ++K L   E +D  + LR+ V  GGCSGFQY F  D  +N DD I EKDGV+LVVD++SY ++ GA VD+ E L  + FV+  NP+A   C C SSF +
Sbjct:   12 IIFTDNAAAKVKSLIEDEGNDELS-LRVFVTGGGCSGFQYGFSFDEAVNEDDTIVEKDGVRLVVDSLSYQYLVGAEVDFREGLEGAQFVIK-NPNASTTCGCGSSFSI 117          
BLAST of CX047490 vs. ExPASy Swiss-Prot
Match: ERPA_FRAP2 (Iron--sulfur cluster insertion protein erpA OS=Francisella philomiragia subsp. philomiragia (strain ATCC 25017) GN=erpA PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.363e-19
Identity = 49/112 (43.75%), Postives = 72/112 (64.29%), Query Frame = -3
Query:  418 SLDSIHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGVKLVVDNISYDFVKGATVDYVEELIRSAFVVSTNPSAVGGCSCKSSFMV 753
            S+D I+ T++   ++KEL   E  DN   LR+ +  GGCSGFQYAF  D +I  DD +  K+GV+L+VD++S+ ++ GA VDY ++ +  A+ V  NP+A   C C SSF V
Sbjct:    7 SVDPINFTESASLKVKEL-IEEEGDNSLSLRVYITGGGCSGFQYAFAFDNEIKEDDMVITKNGVRLLVDSMSFQYLVGADVDYKDD-VEGAYFVIRNPNAKTTCGCGSSFSV 116          
BLAST of CX047490 vs. ExPASy Swiss-Prot
Match: ERPA2_METCA (Iron-sulfur cluster insertion protein erpA 2 OS=Methylococcus capsulatus GN=erpA2 PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.363e-19
Identity = 50/112 (44.64%), Postives = 69/112 (61.61%), Query Frame = -3
Query:  418 SLDSIHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGVKLVVDNISYDFVKGATVDYVEELIRSAFVVSTNPSAVGGCSCKSSFMV 753
            S ++I  TD+  +R+ EL A E  D    LR+ V  GGCSGFQY F  D  +N DD + EK+GV ++VD +S  +++GA +DY E +  S FV+  NP+A   C C SSF V
Sbjct:   21 SAETIKFTDSAAQRVSELLAEE-GDQNLKLRVYVTGGGCSGFQYGFTFDEVVNEDDTVVEKNGVSVLVDPMSLQYLQGAEIDYTENVSGSQFVI-RNPNATTTCGCGSSFSV 130          
BLAST of CX047490 vs. ExPASy Swiss-Prot
Match: ERPA_NITEU (Putative iron-sulfur cluster insertion protein erpA OS=Nitrosomonas europaea GN=erpA PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.699e-19
Identity = 51/109 (46.79%), Postives = 69/109 (63.30%), Query Frame = -3
Query:  418 IHMTDNFIKRMKELQASETSDNKAM-LRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGVKLVVDNISYDFVKGATVDYVEELIRSAFVVSTNPSAVGGCSCKSSFMV 741
            ++ TD    ++KEL   E  DN+A+ LR+ V  GGCSGFQY F  D  +N DD + EK GVKL+VD++S+ ++ GA +DY E    + FV+  NPSA   C C SSF V
Sbjct:   16 LNFTDGAASKVKEL--IEEEDNQALKLRVFVSGGGCSGFQYGFTFDEIVNEDDFVMEKQGVKLLVDSMSFQYLVGAEIDYQESAQGAQFVIK-NPSAASTCGCGSSFSV 121          
The following BLAST results are available for this feature:
BLAST of CX047490 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 314
Match NameE-valueIdentityDescription
ISAM2_ARATH3.001e-4475.65Iron-sulfur assembly protein IscA-like 2, mitochon... [more]
ISCA2_BOVIN4.353e-2756.88Iron-sulfur cluster assembly 2 homolog, mitochondr... [more]
ISCA2_MOUSE8.210e-2655.05Iron-sulfur cluster assembly 2 homolog, mitochondr... [more]
ISCA2_PONAB1.072e-2554.13Iron-sulfur cluster assembly 2 homolog, mitochondr... [more]
ISCA2_HUMAN1.072e-2554.13Iron-sulfur cluster assembly 2 homolog, mitochondr... [more]
ERPA_MARAV2.558e-1947.71Iron-sulfur cluster insertion protein erpA OS=Mari... [more]
ERPA_HAHCH4.363e-1948.15Iron-sulfur cluster insertion protein erpA OS=Hahe... [more]
ERPA_FRAP24.363e-1943.75Iron--sulfur cluster insertion protein erpA OS=Fra... [more]
ERPA2_METCA4.363e-1944.64Iron-sulfur cluster insertion protein erpA 2 OS=Me... [more]
ERPA_NITEU5.699e-1946.79Putative iron-sulfur cluster insertion protein erp... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_14E02_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-14E02-J3-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047490 ID=CX047490; Name=CX047490; organism=Citrus sinensis; type=EST; length=761bp
TTTTTTTTTTTTTTTTTCTCATCGAAACCAATCTTGCAGTTCCTGCTATT
ATTTGCCAGCATGGCGGCAGCAAATCATGGTTGCCTACAAACGGCTAAGG
AGAAATAGTACAATATAAATTCAATTCTCGATCCGCAAATGTGATGTAGT
ATGAAAATGGCACGTGTCTGAACATGACATTCCTTGTTGATAGATAAGCG
GCACATGCTTCAAACACCAAATGATATAGTAAAGATACATATGTCGCAAA
AAAAGGGGAAAAAATTACAAAAATGGATCTGATTCAAATGAATTGTAATG
GAAAAAATTGAAGTAAAAAAGTTGATTCAAAGATCCATTATAGCAAAACT
TAAATAGTCTCTCAGCCAAATTAAAAGTATGGTATCATGGTTCATGGAAT
GGGAAAAACTACTGTTTCACCATAAAGGAGCTTTTACAACTGCATCCGCC
CACTGCACTAGGATTTGTACTCACCACGAATGCAGAGCGGATCAGCTCCT
CAACATAATCAACAGTTGCCCCCTTTACAAAATCATATGAAATATTATCA
ACCACCAATTTAACTCCATCCTTCTCAAAAATCCTGTCATCAGGGTTGAT
TTTATAGTCCAAATCAAAAGCATATTGGAAACCAGAACATCCACCAGTTT
CCACACCCAACCGAAGCATAGCTTTATTGTCTGATGTTTCACTGGCTTGG
AGTTCTTTCATTCTTTTGATGAAATTATCAGTCATGTGAATGGAATCTAA
AGAAGGGGAAG
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