CX047475

Overview
NameCX047475
Unique NameCX047475
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length820
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX047475 vs. ExPASy Swiss-Prot
Match: TKI1_ARATH (TSL-kinase interacting protein 1 OS=Arabidopsis thaliana GN=TKI1 PE=1 SV=2)

HSP 1 Score: 119.398 bits (298), Expect = 2.445e-26
Identity = 72/143 (50.35%), Postives = 89/143 (62.24%), Query Frame = -1 
Query:  392 ETCDAFSFQKNPVLCNEVSRLPDIAPPAADCEQIARTNSVGSGGFFEELLDAEGPTDYPAPEDPMDDCLRNPHTLDNSVNDFNGLTDIYWPDSLGPLDLDIPSSKYRGEDIILSDSLGGLNRLIASSLDAFQNCSFFGLDKKE 820
            ET DAFSFQKN    +  + L  +A P      + R N   S    E     EG  +     DPM++   +PHT+D+      GL D+YWPDSLGPLDLDI SSKY  +D+ILS+SLGGL+RLIA+SLDAFQNCS FG D K+
Sbjct:  603 ETRDAFSFQKNRFANS--TELASVASPKG----VGRVNGEPSQ-LVEASSGDEGSYNPHDDGDPMEEGPADPHTMDSPGKTPCGLADVYWPDSLGPLDLDIRSSKYT-DDLILSESLGGLSRLIATSLDAFQNCSLFGFDNKK 737
The following BLAST results are available for this feature:
BLAST of CX047475 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
TKI1_ARATH2.445e-2650.35TSL-kinase interacting protein 1 OS=Arabidopsis th... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS09_14D05_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-14D05-H9-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047475 ID=CX047475; Name=CX047475; organism=Citrus sinensis; type=EST; length=820bp
TTTTTTTTTTTTTTTTTGGAAAAAAAAAAGTTGTCTATTGGAGTTGCACA
TTTCCTCACATCAGTTCTAGAAACAATATACAGGGTGGTACAAAAAAATA
TTAAAAAGAGAACTGAAACAGTTTTCGGTGTCTATTTTTTGTACAAACAA
GGTGACTCTTTGATCAGAGAATTCTTCCGCACAAAATGAAGACTCCCTTG
CCTTCACACCCCCCACTGTGAGCACCCTTCAAGTCAGCTAAACTAGGACA
TGATTATTGCTACATGAAACTGACAATAAAGTTACCTTTGCAATCGGAAA
ATCCAATTTATTGGTGGAGATCTCAACCCTGACTGCCAATTTTAAAATCC
GAAAAAGAGGCAGTTTCTCCAGCTTCAACTGTTGGTGTCGGTTCTTTCTT
GTCCAACCCAAAGAATGAGCAATTTTGAAATGCATCAAGACTACTGGCAA
TAAGACGGTTCAGACCTCCAAGGCTATCACTAAGAATTATATCTTCACCA
CGATATTTAGAGGATGGTATGTCCAAATCTAATGGTCCTAAAGAGTCGGG
CCAATATATATCTGTTAGCCCATTGAAATCATTTACAGAATTATCCAAAG
TGTGGGGATTGCGGAGACAATCATCCATAGGGTCTTCAGGCGCAGGGTAG
TCAGTAGGGCCCTCAGCATCAAGTAACTCCTCGAAAAAGCCACCAGAACC
CACCGAATTTGTTCTTGCAATCTGCTCACAGTCTGCTGCTGGAGGAGCAA
TGTCAGGCAATCTGGAAACCTCATTACAAAGAACTGGATTTTTTTGAAAT
GAGAATGCATCACATGTTTC
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