CX047474

Overview
NameCX047474
Unique NameCX047474
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length818
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX047474 vs. ExPASy Swiss-Prot
Match: TKI1_ARATH (TSL-kinase interacting protein 1 OS=Arabidopsis thaliana GN=TKI1 PE=1 SV=2)

HSP 1 Score: 242.276 bits (617), Expect = 2.486e-63
Identity = 116/145 (80.00%), Postives = 132/145 (91.03%), Query Frame = 2 
Query:  377 QDEDPRVVASSTLDNVILQQSAKRPTRQWAAWTREEEESFFTALRQVGKNFEKITHRVRSKNKDQVRHYYYRLVRRMNKLLGPGLCLDAKNSKDTNAAMLRWWSLLEKYSCKASKLHLKPRRFKIFVEALEHQLLKDRKRSVRKR 811
            Q+ +P +++S+++   I Q  AK+PTRQWAAWT +EEESFFTALRQVGKNFEKIT RV+SKNKDQVRHYYYRLVRRMNKLLGP L LDAKN KDTNAAMLRWWSLLEKYSCKASKLHLKPRRFK+F+EALEHQLLKDR++S+RKR
Sbjct:   29 QNSNPNLLSSASIS--ITQFPAKKPTRQWAAWTHQEEESFFTALRQVGKNFEKITSRVQSKNKDQVRHYYYRLVRRMNKLLGPDLSLDAKNPKDTNAAMLRWWSLLEKYSCKASKLHLKPRRFKLFIEALEHQLLKDRRKSIRKR 171
The following BLAST results are available for this feature:
BLAST of CX047474 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
TKI1_ARATH2.486e-6380.00TSL-kinase interacting protein 1 OS=Arabidopsis th... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS09_14D05_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-14D05-H9-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047474 ID=CX047474; Name=CX047474; organism=Citrus sinensis; type=EST; length=818bp
ATCAAATTAACTAATAACGACCTTTTTTTTCGAGTTTTTTCTTTTCTTTT
CAGCAAAGTGAAAAATTTTAAAAGAGAAATAATAATAATAATAATAAAAA
AGAAAATTCCTTCTTTTCTCTTCTTCTCCTAACCGTAGAGTCGTCTGTCG
GAAGATTCCGTCCGGTTTCGATTTGCTTTTTGTTCGTGCAATTCCTTGGT
TGTGGGATTTCAGCTTTAAATCCAAGTTGAAGGGCAAAAGGAGAAATTTT
TCGCACGTGAGAAGCTCAGGATCATGTGTTTACTGTTCTTGTGATTGTGA
TGTCTTCAAAATGCAGATTGAATCACAGTTGTCCATGAACTCCGAGGTGC
ATCTTCATCCTAGGAATACTCCAGTTCAGGATGAAGACCCTCGTGTAGTA
GCCTCATCTACCCTCGATAATGTTATTCTGCAGCAGTCTGCTAAAAGGCC
TACACGGCAATGGGCTGCTTGGACACGGGAAGAGGAGGAAAGCTTTTTCA
CTGCATTGCGACAAGTTGGCAAGAATTTTGAGAAGATCACTCATCGAGTC
CGAAGCAAAAACAAGGATCAGGTCCGACATTATTATTATCGTCTGGTGAG
GCGGATGAACAAGCTGCTGGGTCCAGGATTATGTCTGGATGCAAAAAACT
CTAAAGATACCAATGCTGCAATGCTTCGATGGTGGTCTTTACTGGAAAAG
TATAGCTGCAAAGCCTCAAAGCTTCACCTGAAGCCCCGAAGGTTCAAGAT
ATTTGTAGAAGCCTTGGAGCATCAACTCCTGAAAGATAGGAAGAGAAGTG
TTAGAAAGCGACCTTCTC
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