CX047454

Overview
NameCX047454
Unique NameCX047454
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length711
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX047454 vs. ExPASy Swiss-Prot
Match: VA714_ARATH (Vesicle-associated membrane protein 714 OS=Arabidopsis thaliana GN=VAMP714 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.119e-17
Identity = 48/78 (61.54%), Postives = 50/78 (64.10%), Query Frame = -1 
Query:  478 ENIEKILERGDRIELLVDKTATMQDGAFHFRKQSKRLRRALWMKNXXXXXXXXXXXXXXXXXXXXXXXXXXXLPSCRS 711
            ENIEKI+ERGDRIELLVDKTATMQD +FHFRKQSKRLRRALWMKN                           LPSCRS
Sbjct:  144 ENIEKIMERGDRIELLVDKTATMQDSSFHFRKQSKRLRRALWMKNAKLLVLLTCLIVFLLYIIIASFCGGITLPSCRS 221
The following BLAST results are available for this feature:
BLAST of CX047454 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
VA714_ARATH2.119e-1761.54Vesicle-associated membrane protein 714 OS=Arabido... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS09_14C07_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-14C07-F13-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047454 ID=CX047454; Name=CX047454; organism=Citrus sinensis; type=EST; length=711bp
TTTTTTTTTTTTTGAACCAAAACCATCTAGTATCTGATACCACATTGATA
CAAGTAGTTGTAAGGGAAGAAAAAGCGTCACTACTAATGCTGCACTGTTT
TGGTTGCGTTCAAATATACTTTCTACAAAAAGATGACTCATATGAAGATT
ACAAGACCAGAATTTCAAAATCAGACAATGAAAAATAAGATACTAAAAAT
TCCAAGCATTTACAGAATACAACGATGGCTCACCACAATGAGATGGCATC
TCGTCAGACTTCCGAGATATGTCCCTTATACTGAATGTTATAATGAGAGC
ATCTGCAGGATTATTTCTGGCACCTTGCAGCTGTATAGATACTATATTTC
CACATACTCCTTAAATAGTTGACCCACAAAACCAAGGAAACCCGTCCAAG
ATTAATTCACATAATTGACAACAAACAACATCAATGCACACCCGAGCAGT
AATTTAACACCAGTTGACCACGACTCAAGATCTGCATGAAGGTAAAGTGA
TGCCTCCACAAGCAGCAGCAATTATTATGTACAGCAACAGAACAATTAAG
CCTGTCAAGAGGGCCAATAGCTTAGCATTTTTCATCCAAAGCGCTCTACG
AAGGCGCTTAGACTGTTTCCTAAAGTGAAATGCGCCGTCTTGCATTGTTG
CAGTTTTGTCAACAAGAAGCTCAATCCTATCACCTCTCTCCAATATTTTT
TCAATATTCTC
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