CX047447

Overview
NameCX047447
Unique NameCX047447
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length833
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX047447 vs. ExPASy Swiss-Prot
Match: 12KD_FRAAN (Auxin-repressed 12.5 kDa protein OS=Fragaria ananassa PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.570e-28
Identity = 65/121 (53.72%), Postives = 79/121 (65.29%), Query Frame = 1 
Query:   91 MLEKLWDDVVAGPQPDRGLGRLRKITTTPLAVKEGGEAESSSGKFQRSLSMXXXXXXXXXXXXXXXXXXXRKDNVWRSVFHPGSNLATRGIGAEVFDKPTHPNSPTVYDWLYSGETRSKHH 453
            +L+KLWDD+VAGPQP+RGLG LRK+   PL +K+ GE+           S                    RKDNVWRSVFHPGSNL+++ +G +VFD P  PNSPTVYDW+YSGETRSKHH
Sbjct:    3 LLDKLWDDIVAGPQPERGLGMLRKVPQ-PLNLKDEGES-----------SKITMPTTPTTPVTPTTPISARKDNVWRSVFHPGSNLSSKTMGNQVFDSP-QPNSPTVYDWMYSGETRSKHH 110
The following BLAST results are available for this feature:
BLAST of CX047447 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
12KD_FRAAN1.570e-2853.72Auxin-repressed 12.5 kDa protein OS=Fragaria anana... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS09_14C03_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-14C03-F5-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047447 ID=CX047447; Name=CX047447; organism=Citrus sinensis; type=EST; length=833bp
CTATATAAACAAACAATAGAGGAAGTAGCCGATCTCACTGAAGAAGAGGT
TAAAGATTTAGAAACTAGCAGCTAAATTGTAAATTTAAAGATGCTAGAGA
AGCTTTGGGACGATGTTGTGGCAGGGCCTCAGCCTGATCGTGGCCTTGGC
AGGCTGAGGAAAATCACCACAACACCCTTAGCAGTCAAAGAGGGTGGTGA
GGCGGAGTCGTCGTCGGGCAAGTTCCAGAGGTCTCTGTCAATGCCAGCGA
GTCCAGGGGCACCGTCGACGCCAGTGACGCCGACGACGCCGCTGTCGGCG
CGTAAGGACAACGTGTGGAGGAGCGTGTTTCACCCCGGTAGCAACCTTGC
TACTAGGGGTATCGGTGCAGAGGTCTTTGACAAGCCCACACATCCTAACT
CTCCCACTGTTTATGACTGGCTTTACAGTGGGGAGACTAGGAGCAAGCAT
CATCACTGAGTGGATGATACGCTCCAGCGATGTAAATGAATGTGATGGGT
CACCAACTCACCGGATGAGTTGCCTGTAGTCTGTAGATAGTGTCGTTTCG
TTTTGGATTTCGCAACGTGTCCTTGTCGTTTTGTTAATGCTATTTGTATT
ACGTGTCCTTCCTATCTAAAGTTTGGTTTTAAAATGCTGCTGACTAAAAG
TAAACTAAAGACTGTGATGTTTTTATATCATATAATTTAATAATTGTATG
TGATGTGAGGATTGCTAAGCTGTGGGCGGAGATGAAAGGTTGCTGGTTTT
TGGGTTTAGGACATGTTTTTGATTGTCATTTTGTAAGAGCCAAGATCATC
CCTTCGTGGACGGTCGTGATGAGCATATATGTT
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