FC921970

Overview
NameFC921970
Unique NameFC921970
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length422
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1783 contig Csv1_Contig1783:227..648. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC921970 vs. ExPASy Swiss-Prot
Match: AIR12_ARATH (Auxin-induced in root cultures protein 12 OS=Arabidopsis thaliana GN=AIR12 PE=1 SV=3)

HSP 1 Score: 88.1965 bits (217), Expect = 1.394e-17
Identity = 55/144 (38.19%), Postives = 78/144 (54.17%), Query Frame = 3 
Query:    3 CTDLPVLNSFLHWNYDQSTNTVDLAFRHTTTSSSR-WVPWALNPSGQRMAGSQCLVAFQNSTG-RPVAYTTPIGSGSPTLQPGSLSFQVPNISA-TLEGNQWTIFAXXXXXXXXXXXXXVWQ-EGPMNGDTPGAHAMSGDNARS 422
            C DLPVLNS+LH+ Y+ S +++ +AF  T + ++  WV WA+NP+G +MAGSQ  +A+++  G  PV  T  I S S +L  G L+F   N+ A +L G +  IF              VWQ  G +    PG H    DN  S
Sbjct:   43 CEDLPVLNSYLHYTYNSSNSSLSVAFVATPSQANGGWVAWAINPTGTKMAGSQAFLAYRSGGGAAPVVKTYNISSYS-SLVEGKLAFDFWNLRAESLSGGRIAIFTTVKVPAGADSVNQVWQIGGNVTNGRPGVHPFGPDNLGS 185
The following BLAST results are available for this feature:
BLAST of FC921970 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
AIR12_ARATH1.394e-1738.19Auxin-induced in root cultures protein 12 OS=Arabi... [more]
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Properties
Property NameValue
Genbank descriptionC06056A12T7 RindPdigS Citrus sinensis cDNA clone C06056A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921970 ID=FC921970; Name=FC921970; organism=Citrus sinensis; type=EST; length=422bp
CATGCACAGATCTTCCCGTGCTGAATTCATTTCTCCACTGGAATTATGAT
CAGTCAACAAACACCGTCGATCTCGCCTTCCGGCACACGACCACGAGCTC
ATCCCGATGGGTGCCCTGGGCACTGAACCCATCAGGCCAAAGAATGGCAG
GCTCACAGTGTCTTGTGGCCTTTCAAAACTCAACTGGGCGTCCCGTGGCT
TATACTACTCCTATTGGTTCTGGCTCGCCGACGCTGCAACCGGGTAGTTT
GAGCTTCCAAGTGCCAAATATTTCAGCCACTCTTGAGGGAAATCAATGGA
CTATTTTTGCAACTTTGCAGCTTACTAACAATTTGTTGTCAACTAACCAA
GTTTGGCAAGAAGGTCCAATGAACGGTGATACTCCTGGCGCCCATGCCAT
GAGCGGTGATAATGCAAGATCA
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