CX047438

Overview
NameCX047438
Unique NameCX047438
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length889
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047438 vs. ExPASy Swiss-Prot
Match: WRBA_SHIDS (Flavoprotein wrbA OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=wrbA PE=3 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 2.668e-45
Identity = 99/199 (49.75%), Postives = 131/199 (65.83%), Query Frame = -2
Query:  115 TKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGYTFGSGMFEMNEVKGGSSYGAGTFA-ADGSRQPTDLELQQAFHQGKYVAEIAKKL 708
            TK+ ++YYS+YGH+ETMAR V  GA+ V G E  + +VPET+   + +K  A  KT   PV  P +L + D  +FG P+RFG M+ Q + F D T  LWAS AL GK A +F STG  GGGQE T  +  T LAHHGM+ VP+GY     +F++++V+GG+ YGA T A  DGSRQP+  EL  A +QG+YVA +A KL
Sbjct:    2 TKVLVLYYSMYGHIETMARAVAEGASKVDGAEVVVKRVPETMPPQLFEK--AGGKTQTAPVATPQELADYDAIIFGTPTRFGNMSGQMRTFLDQTGGLWASGALYGKLASVFSSTG-TGGGQEQTITSTWTTLAHHGMVIVPIGYA-AQELFDVSQVRGGTPYGATTIAGGDGSRQPSQEELSIARYQGEYVAGLAVKL 196          
BLAST of CX047438 vs. ExPASy Swiss-Prot
Match: WRBA_CITK8 (Flavoprotein wrbA OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=wrbA PE=3 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 3.485e-45
Identity = 100/198 (50.51%), Postives = 129/198 (65.15%), Query Frame = -2
Query:  115 KIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGYTFGSGMFEMNEVKGGSSYGAGTFA-ADGSRQPTDLELQQAFHQGKYVAEIAKKL 705
            KI ++YYS+YGH+ETMA  V  GAN V G E  + +VPET+   I  K  A  KT + PV  P +L + D  +FG P+RFG M+ Q + F D T  LWAS AL GK A +F STG  GGGQE T  +  T LAHHGM+ VP+GY     +F++++V+GG+ YGA T A  DGSRQP+  EL  A +QG+YVA +A KL
Sbjct:    3 KILVLYYSMYGHIETMAHAVAEGANKVDGAEVVIKRVPETMQPEIFAK--AGGKTQNAPVATPQELPDYDAIIFGTPTRFGNMSGQMRTFLDQTGGLWASGALYGKLASVFSSTG-TGGGQEQTITSTWTTLAHHGMVIVPIGYA-AQELFDVSQVRGGTPYGATTIAGGDGSRQPSQEELSIARYQGEYVAGLAVKL 196          
BLAST of CX047438 vs. ExPASy Swiss-Prot
Match: WRBA_ECO5E (Flavoprotein wrbA OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=wrbA PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 4.552e-45
Identity = 99/198 (50.00%), Postives = 130/198 (65.66%), Query Frame = -2
Query:  115 KIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGYTFGSGMFEMNEVKGGSSYGAGTFA-ADGSRQPTDLELQQAFHQGKYVAEIAKKL 705
            K+ ++YYS+YGH+ETMAR V  GA+ V G E  + +VPET+S  + +K  A  KT   PV  P +L   D  +FG P+RFG M+ Q + F D T  LWAS AL GK A +F STG  GGGQE T  +  T LAHHGM+ VP+GY     +F++++V+GG+ YGA T A  DGSRQP+  EL  A +QG+YVA +A KL
Sbjct:    3 KVLVLYYSMYGHIETMARAVAEGASKVDGAEVVVKRVPETMSPQLFEK--AGGKTQTAPVATPQELANYDAIIFGTPTRFGNMSGQMRTFLDQTGGLWASGALYGKLASVFSSTG-TGGGQEQTITSTWTTLAHHGMVIVPIGYA-AQELFDVSQVRGGTPYGATTIAGGDGSRQPSQEELSIARYQGEYVAGLAVKL 196          
BLAST of CX047438 vs. ExPASy Swiss-Prot
Match: WRBA_ECO57 (Putative flavoprotein wrbA OS=Escherichia coli O157:H7 GN=wrbA PE=5 SV=3)

HSP 1 Score: 181.8 bits (460), Expect = 4.552e-45
Identity = 99/198 (50.00%), Postives = 130/198 (65.66%), Query Frame = -2
Query:  115 KIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGYTFGSGMFEMNEVKGGSSYGAGTFA-ADGSRQPTDLELQQAFHQGKYVAEIAKKL 705
            K+ ++YYS+YGH+ETMAR V  GA+ V G E  + +VPET+S  + +K  A  KT   PV  P +L   D  +FG P+RFG M+ Q + F D T  LWAS AL GK A +F STG  GGGQE T  +  T LAHHGM+ VP+GY     +F++++V+GG+ YGA T A  DGSRQP+  EL  A +QG+YVA +A KL
Sbjct:    3 KVLVLYYSMYGHIETMARAVAEGASKVDGAEVVVKRVPETMSPQLFEK--AGGKTQTAPVATPQELANYDAIIFGTPTRFGNMSGQMRTFLDQTGGLWASGALYGKLASVFSSTG-TGGGQEQTITSTWTTLAHHGMVIVPIGYA-AQELFDVSQVRGGTPYGATTIAGGDGSRQPSQEELSIARYQGEYVAGLAVKL 196          
BLAST of CX047438 vs. ExPASy Swiss-Prot
Match: ALTA7_ALTAL (Minor allergen Alt a 7 OS=Alternaria alternata GN=ALTA7 PE=1 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 4.552e-45
Identity = 104/202 (51.49%), Postives = 132/202 (65.35%), Query Frame = -2
Query:  118 MATKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIR-PHQLKEADGFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGY-TFGSGMFEMNEVKGGSSYGAGTFAA-DGSRQPTDLELQQAFHQGKYVAEIAKK 714
            MA KI IVYYS+YGH++ MA    +G     G +A L+QV ETL   +L KM APPK + VPV+  P  L+E DG LFG P+R+G   AQ K F+D T + W   A  GK AG+F STG  GGGQE TA+T+++ L  HG ++VPLGY T  S +  ++EV GGS +GAGTF+A DGSRQP++LEL  A  QGK   E   K
Sbjct:    1 MAPKIAIVYYSMYGHIKKMADAELKGIQEA-GGDAKLFQVAETLPQEVLDKMYAPPKDSSVPVLEDPAVLEEFDGILFGIPTRYGNFPAQFKTFWDKTGKQWQQGAFWGKYAGVFVSTGTLGGGQETTAITSMSTLVDHGFIYVPLGYKTAFSMLANLDEVHGGSPWGAGTFSAGDGSRQPSELELNIAQAQGKAFYEAVAK 201          
BLAST of CX047438 vs. ExPASy Swiss-Prot
Match: WRBA_SHIFL (Flavoprotein wrbA OS=Shigella flexneri GN=wrbA PE=3 SV=2)

HSP 1 Score: 180.644 bits (457), Expect = 1.014e-44
Identity = 98/198 (49.49%), Postives = 130/198 (65.66%), Query Frame = -2
Query:  115 KIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGYTFGSGMFEMNEVKGGSSYGAGTFA-ADGSRQPTDLELQQAFHQGKYVAEIAKKL 705
            K+ ++YYS+YGH+ETMAR V  GA+ V G E  + +VPET+   + +K  A  KT   PV  P +L + D  +FG P+RFG M+ Q + F D T  LWAS AL GK A +F STG  GGGQE T  +  T LAHHGM+ VP+GY     +F++++V+GG+ YGA T A  DGSRQP+  EL  A +QG+YVA +A KL
Sbjct:    3 KVLVLYYSMYGHIETMARAVAEGASKVDGAEVVVKRVPETMPPQLFEK--AGGKTQTAPVATPQELADYDAIIFGTPTRFGNMSGQMRTFLDQTGGLWASGALYGKLASVFSSTG-TGGGQEQTITSTWTTLAHHGMVIVPIGYA-AQELFDVSQVRGGTPYGATTIAGGDGSRQPSQEELSIARYQGEYVAGLAVKL 196          
BLAST of CX047438 vs. ExPASy Swiss-Prot
Match: WRBA_SHIF8 (Flavoprotein wrbA OS=Shigella flexneri serotype 5b (strain 8401) GN=wrbA PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 1.014e-44
Identity = 98/198 (49.49%), Postives = 130/198 (65.66%), Query Frame = -2
Query:  115 KIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGYTFGSGMFEMNEVKGGSSYGAGTFA-ADGSRQPTDLELQQAFHQGKYVAEIAKKL 705
            K+ ++YYS+YGH+ETMAR V  GA+ V G E  + +VPET+   + +K  A  KT   PV  P +L + D  +FG P+RFG M+ Q + F D T  LWAS AL GK A +F STG  GGGQE T  +  T LAHHGM+ VP+GY     +F++++V+GG+ YGA T A  DGSRQP+  EL  A +QG+YVA +A KL
Sbjct:    3 KVLVLYYSMYGHIETMARAVAEGASKVDGAEVVVKRVPETMPPQLFEK--AGGKTQTAPVATPQELADYDAIIFGTPTRFGNMSGQMRTFLDQTGGLWASGALYGKLASVFSSTG-TGGGQEQTITSTWTTLAHHGMVIVPIGYA-AQELFDVSQVRGGTPYGATTIAGGDGSRQPSQEELSIARYQGEYVAGLAVKL 196          
BLAST of CX047438 vs. ExPASy Swiss-Prot
Match: WRBA_ECOUT (Flavoprotein wrbA OS=Escherichia coli (strain UTI89 / UPEC) GN=wrbA PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 1.014e-44
Identity = 98/198 (49.49%), Postives = 130/198 (65.66%), Query Frame = -2
Query:  115 KIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGYTFGSGMFEMNEVKGGSSYGAGTFA-ADGSRQPTDLELQQAFHQGKYVAEIAKKL 705
            K+ ++YYS+YGH+ETMAR V  GA+ V G E  + +VPET+   + +K  A  KT   PV  P +L + D  +FG P+RFG M+ Q + F D T  LWAS AL GK A +F STG  GGGQE T  +  T LAHHGM+ VP+GY     +F++++V+GG+ YGA T A  DGSRQP+  EL  A +QG+YVA +A KL
Sbjct:    3 KVLVLYYSMYGHIETMARAVAEGASKVDGAEVVVKRVPETMPPQLFEK--AGGKTQTAPVATPQELADYDAIIFGTPTRFGNMSGQMRTFLDQTGGLWASGALYGKLASVFSSTG-TGGGQEQTITSTWTTLAHHGMVIVPIGYA-AQELFDVSQVRGGTPYGATTIAGGDGSRQPSQEELSIARYQGEYVAGLAVKL 196          
BLAST of CX047438 vs. ExPASy Swiss-Prot
Match: WRBA_ECOSM (Flavoprotein wrbA OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=wrbA PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 1.014e-44
Identity = 98/198 (49.49%), Postives = 130/198 (65.66%), Query Frame = -2
Query:  115 KIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGYTFGSGMFEMNEVKGGSSYGAGTFA-ADGSRQPTDLELQQAFHQGKYVAEIAKKL 705
            K+ ++YYS+YGH+ETMAR V  GA+ V G E  + +VPET+   + +K  A  KT   PV  P +L + D  +FG P+RFG M+ Q + F D T  LWAS AL GK A +F STG  GGGQE T  +  T LAHHGM+ VP+GY     +F++++V+GG+ YGA T A  DGSRQP+  EL  A +QG+YVA +A KL
Sbjct:    3 KVLVLYYSMYGHIETMARAVAEGASKVDGAEVVVKRVPETMPPQLFEK--AGGKTQTAPVATPQELADYDAIIFGTPTRFGNMSGQMRTFLDQTGGLWASGALYGKLASVFSSTG-TGGGQEQTITSTWTTLAHHGMVIVPIGYA-AQELFDVSQVRGGTPYGATTIAGGDGSRQPSQEELSIARYQGEYVAGLAVKL 196          
BLAST of CX047438 vs. ExPASy Swiss-Prot
Match: WRBA_ECOSE (Flavoprotein wrbA OS=Escherichia coli (strain SE11) GN=wrbA PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 1.014e-44
Identity = 98/198 (49.49%), Postives = 130/198 (65.66%), Query Frame = -2
Query:  115 KIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGYTFGSGMFEMNEVKGGSSYGAGTFA-ADGSRQPTDLELQQAFHQGKYVAEIAKKL 705
            K+ ++YYS+YGH+ETMAR V  GA+ V G E  + +VPET+   + +K  A  KT   PV  P +L + D  +FG P+RFG M+ Q + F D T  LWAS AL GK A +F STG  GGGQE T  +  T LAHHGM+ VP+GY     +F++++V+GG+ YGA T A  DGSRQP+  EL  A +QG+YVA +A KL
Sbjct:    3 KVLVLYYSMYGHIETMARAVAEGASKVDGAEVVVKRVPETMPPQLFEK--AGGKTQTAPVATPQELADYDAIIFGTPTRFGNMSGQMRTFLDQTGGLWASGALYGKLASVFSSTG-TGGGQEQTITSTWTTLAHHGMVIVPIGYA-AQELFDVSQVRGGTPYGATTIAGGDGSRQPSQEELSIARYQGEYVAGLAVKL 196          
The following BLAST results are available for this feature:
BLAST of CX047438 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 146
Match NameE-valueIdentityDescription
WRBA_SHIDS2.668e-4549.75Flavoprotein wrbA OS=Shigella dysenteriae serotype... [more]
WRBA_CITK83.485e-4550.51Flavoprotein wrbA OS=Citrobacter koseri (strain AT... [more]
WRBA_ECO5E4.552e-4550.00Flavoprotein wrbA OS=Escherichia coli O157:H7 (str... [more]
WRBA_ECO574.552e-4550.00Putative flavoprotein wrbA OS=Escherichia coli O15... [more]
ALTA7_ALTAL4.552e-4551.49Minor allergen Alt a 7 OS=Alternaria alternata GN=... [more]
WRBA_SHIFL1.014e-4449.49Flavoprotein wrbA OS=Shigella flexneri GN=wrbA PE=... [more]
WRBA_SHIF81.014e-4449.49Flavoprotein wrbA OS=Shigella flexneri serotype 5b... [more]
WRBA_ECOUT1.014e-4449.49Flavoprotein wrbA OS=Escherichia coli (strain UTI8... [more]
WRBA_ECOSM1.014e-4449.49Flavoprotein wrbA OS=Escherichia coli (strain SMS-... [more]
WRBA_ECOSE1.014e-4449.49Flavoprotein wrbA OS=Escherichia coli (strain SE11... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_14B10_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-14B10-D19-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047438 ID=CX047438; Name=CX047438; organism=Citrus sinensis; type=EST; length=889bp
TTTTTTTAAAAGTAGAAGATTTTATTTCATAGGTTTTCCTTGATAAATTA
CAGTTGAGTATTTCTTCACACTATCAGATACATCATGTACAAGAATTTCT
TAAGATCAACGTTTGAGCTTCTTTGCTATTTCAGCAACATACTTTCCCTG
GTGAAAGGCCTGTTGGAGTTCTAGATCTGTGGGTTGGCGGGAACCATCTG
CTGCAAATGTTCCAGCGCCATAAGAAGAGCCACCCTTCACCTCATTCATC
TCAAACATGCCGCTGCCAAAGGTGTAACCAAGTGGAACAAACAGCATACC
ATGATGTGCTAGTTGTGTTACGGCAGTCAATGCAGTAAGCTCCTGGCCTC
CCCCATGAAAACCAGTACTCCAGAAGATTCCAGCAGGTTTGCCAGCAAGT
GCTTGTGATGCCCATAGCTCATAAGTCGCATCAAAGAAGGCCTTGCACTG
GGCTGCCATGACCCCAAAACGAGAGGGAAACCCAAAGAGAAAACCATCAG
CCTCCTTTAGCTGGTGGGGCCTGATCACTGGCACGTCATTTGTTTTAGGA
GGAGCTTTCATCTTTTGCAAAATCACACTGGAAAGTGTCTCAGGTACCTG
CCAAAGTGTTGCTTCAACTCCCAGAACAGAGTTAGCTCCTCGCTGCACTT
CCCTCGCCATAGTCTCCACATGTCCATACAAAGAGTAATACACTATGTAA
ATCTTGGTGGCCATGGTATTTACAGACTTGATGGAATCTAAGTAATCCTG
ATAGAAGTGTCAGTTGTGCCTATACACAAACCTGACTGCTCTCAGGTTAC
AAGGCAACGAATGGCTGGAGTTTACGAAGGAACCGATGATGAAGCTTTTA
AATTGTAACGTTGGTGTCCTCTTCGAAGCAAGCAGGCCT
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