CX047428

Overview
NameCX047428
Unique NameCX047428
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length894
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047428 vs. ExPASy Swiss-Prot
Match: TOM20_SOLTU (Mitochondrial import receptor subunit TOM20 OS=Solanum tuberosum GN=TOM20 PE=1 SV=1)

HSP 1 Score: 247.669 bits (631), Expect = 6.792e-65
Identity = 123/196 (62.76%), Postives = 150/196 (76.53%), Query Frame = -3
Query:  266 QSDFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSLEVSTKAPELHMELHKHGINQQTL--XXXXXXXXXXXXXXXXSDLKYDIFGWVILAVGIVAWVGMANSRIPPPP 847
            QS+FDRLL  EH RK+AE  YA++PLDADNLTRWG ALLELSQF+ V++SK++I++A SK EEAL ++P KH  LW LGNAHTS  FLT D+ EAK  F+KA++CFQ+A D +P+N+LY+KSLEV+ KAPELHME+H+HG  QQT+                  SDLKYDIFGWVILAVGIVAWVG A S +PPPP
Sbjct:    4 QSEFDRLLFFEHARKSAETTYAQNPLDADNLTRWGGALLELSQFQPVAESKQMISDATSKLEEALTVNPEKHDALWCLGNAHTSHVFLTPDMDEAKVYFEKATQCFQQAFDADPSNDLYRKSLEVTAKAPELHMEIHRHGPMQQTMAAEPSTSTSTKSSKKTKSSDLKYDIFGWVILAVGIVAWVGFAKSNMPPPP 199          
BLAST of CX047428 vs. ExPASy Swiss-Prot
Match: TO202_ARATH (Mitochondrial import receptor subunit TOM20-2 OS=Arabidopsis thaliana GN=TOM20-2 PE=1 SV=2)

HSP 1 Score: 209.92 bits (533), Expect = 1.569e-53
Identity = 106/210 (50.48%), Postives = 137/210 (65.24%), Query Frame = -3
Query:  260 MEFSQSDFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSLEVSTKAPELHMELHKHGINQQTL----------XXXXXXXXXXXXXXXXSDLKYDIFGWVILAVGIVAWVGMANSRIPPPPAR 859
            MEFS +DF+RL++ EH RK +EA Y  DPLD++NL +WG ALLELSQF+ + ++K ++N+AISK EEAL I+P KH  LW + NA+T+  F   D  EAK  FDKA+E FQRA +E+P N+ Y+KSL+ S KAPELHM+    G+ QQ L                          ++  YD+ GW+ILA GIVAWVGMA S  PPPPAR
Sbjct:    1 MEFSTADFERLIMFEHARKNSEAQYKNDPLDSENLLKWGGALLELSQFQPIPEAKLMLNDAISKLEEALTINPGKHQALWCIANAYTAHAFYVHDPEEAKEHFDKATEYFQRAENEDPGNDTYRKSLDSSLKAPELHMQFMNQGMGQQILGGGGGGGGGGMASSNVSQSSKKKKRNTEFTYDVCGWIILACGIVAWVGMAKSLGPPPPAR 210          
BLAST of CX047428 vs. ExPASy Swiss-Prot
Match: TO203_ARATH (Mitochondrial import receptor subunit TOM20-3 OS=Arabidopsis thaliana GN=TOM20-3 PE=1 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 2.960e-52
Identity = 103/200 (51.50%), Postives = 136/200 (68.00%), Query Frame = -3
Query:  260 SQSDFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSLEVSTKAPELHMELHKHGINQQTL---XXXXXXXXXXXXXXXXSDLKYDIFGWVILAVGIVAWVGMANSRIPPPPAR 850
            ++++FDR+LL E  R+ AE  Y  +PLDADNLTRWG  LLELSQF S+SD+K++I EAI+KFEEAL+IDP K   +W +GNA+TS  FLT D +EAK +FD A++ FQ+AVDE+P N  Y KSLE++ KAP+LH E +K G+  Q +                   SD KYD  GWVILA+G+VAW+  A + +P  P R
Sbjct:    3 TETEFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQLHAEAYKQGLGSQPMGRVEAPAPPSSKAVKNKKSSDAKYDAMGWVILAIGVVAWISFAKANVPVSPPR 202          
BLAST of CX047428 vs. ExPASy Swiss-Prot
Match: TOM20_ORYSI (Probable mitochondrial import receptor subunit TOM20 OS=Oryza sativa subsp. indica GN=TOM20 PE=2 SV=2)

HSP 1 Score: 188.734 bits (478), Expect = 3.744e-47
Identity = 96/197 (48.73%), Postives = 127/197 (64.47%), Query Frame = -3
Query:  260 SQSDFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSLEVSTKAPELHMELHKHGINQQTLXXXXXXXXXXXXXXXXSDLKYDIFGWVILAVGIVAWVGMANSRIPPPPAR 850
            + SD +R+   +   + A+  Y ++P DADNLTRWG ALLELSQ  +  +S K + +A SK EEAL IDP K   LW LGNA TS GF T+D  +A   F+KA++CFQ+AVD EP N+LY+KSL++S+KAPELHME+H+   +Q +                 SD  YD+FGWV+L VG+V WVG+A S  PP   R
Sbjct:    5 AMSDPERMFFFDLACQNAKVTYEQNPHDADNLTRWGGALLELSQMRNGPESLKCLEDAESKLEEALKIDPMKADALWCLGNAQTSHGFFTSDTVKANEFFEKATQCFQKAVDVEPANDLYRKSLDLSSKAPELHMEIHRQMASQASQAASSTSNTRQSRKKKDSDFWYDVFGWVVLGVGMVVWVGLAKSNAPPQAPR 201          
BLAST of CX047428 vs. ExPASy Swiss-Prot
Match: TOM20_ORYSJ (Probable mitochondrial import receptor subunit TOM20 OS=Oryza sativa subsp. japonica GN=TOM20 PE=2 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 7.061e-46
Identity = 96/198 (48.48%), Postives = 127/198 (64.14%), Query Frame = -3
Query:  260 SQSDFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSLEVSTKAPELHMELHKHGINQQT-LXXXXXXXXXXXXXXXXSDLKYDIFGWVILAVGIVAWVGMANSRIPPPPAR 850
            + SD +R+   +   + A+  Y ++P DADNLTRWG ALLELSQ  +  +S K + +A SK EEAL IDP K   LW LGNA TS GF T+D  +A   F+KA++CFQ+AVD EP N+LY+KSL++S+KAPELHME+H+   +Q +                  SD  YD+FGWV+L VG+V WVG+A S  PP   R
Sbjct:    5 AMSDPERMFFFDLACQNAKVTYEQNPHDADNLTRWGGALLELSQMRNGPESLKCLEDAESKLEEALKIDPMKADALWCLGNAQTSHGFFTSDTVKANEFFEKATQCFQKAVDVEPANDLYRKSLDLSSKAPELHMEIHRQMASQASQAASSTSNTRQSRKKKKDSDFWYDVFGWVVLGVGMVVWVGLAKSNAPPQAPR 202          
BLAST of CX047428 vs. ExPASy Swiss-Prot
Match: TO204_ARATH (Mitochondrial import receptor subunit TOM20-4 OS=Arabidopsis thaliana GN=TOM20-4 PE=1 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 5.977e-45
Identity = 97/191 (50.79%), Postives = 128/191 (67.02%), Query Frame = -3
Query:  275 QSDFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSLEVSTKAPELHMELHKHGINQQTLXXXXXXXXXXXXXXXXSDLKYDIFGWVILAVGIVAWVGMANSRIP 847
            Q++ +RL++ EH RK AEA Y K+PLDA+NLTRW  ALLELSQF++  + K++I EAI K  EALVIDP KH  LW +GNAH S GFL++D +EA  +F+KAS+ FQ AV+E+P +ELY+KSL +++KAPELH                             S+ KYD+FGWVILA  +VAW+  ANS+ P
Sbjct:    4 QNENERLMVFEHARKVAEATYVKNPLDAENLTRWAGALLELSQFQT--EPKQMILEAILKLGEALVIDPKKHDALWLIGNAHLSFGFLSSDQTEASDNFEKASQFFQLAVEEQPESELYRKSLTLASKAPELHTG---------GTAGPSSNSAKTMKQKKTSEFKYDVFGWVILASYVVAWISFANSQTP 183          
BLAST of CX047428 vs. ExPASy Swiss-Prot
Match: TO201_ARATH (Mitochondrial import receptor subunit TOM20-1 OS=Arabidopsis thaliana GN=TOM20-1 PE=1 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 1.335e-36
Identity = 86/187 (45.99%), Postives = 115/187 (61.50%), Query Frame = -3
Query:  281 DRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSLEVSTKAPELHMELHKHGINQQT--LXXXXXXXXXXXXXXXXSDLKYDIFGWVILAVGIVAWVGMANSR 835
            D+L   E  RK AE  Y  +P DADNL RWGEALLELSQF++V DS K+I +AISK E+A++IDP KH  +W LGNA+TS   LT D ++A+ +F  A   F  AV ++P N++Y KSLE++ KAP+LH   HK+ +      +                SD KY + GWVILA+G+VA +     R
Sbjct:    2 DKLNFFEEIRKDAEETYKLNPEDADNLMRWGEALLELSQFQNVIDSLKMIQDAISKLEDAILIDPMKHDAVWCLGNAYTSYARLTPDDTQARLNFGLAYLFFGIAVAQQPDNQVYHKSLEMADKAPQLHTGFHKNRLLSLLGGVETLAIPSPKVVKNKKSSDEKYIVMGWVILAIGVVACISFRKLR 188          
The following BLAST results are available for this feature:
BLAST of CX047428 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
TOM20_SOLTU6.792e-6562.76Mitochondrial import receptor subunit TOM20 OS=Sol... [more]
TO202_ARATH1.569e-5350.48Mitochondrial import receptor subunit TOM20-2 OS=A... [more]
TO203_ARATH2.960e-5251.50Mitochondrial import receptor subunit TOM20-3 OS=A... [more]
TOM20_ORYSI3.744e-4748.73Probable mitochondrial import receptor subunit TOM... [more]
TOM20_ORYSJ7.061e-4648.48Probable mitochondrial import receptor subunit TOM... [more]
TO204_ARATH5.977e-4550.79Mitochondrial import receptor subunit TOM20-4 OS=A... [more]
TO201_ARATH1.335e-3645.99Mitochondrial import receptor subunit TOM20-1 OS=A... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS09_14B05_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-14B05-D9-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047428 ID=CX047428; Name=CX047428; organism=Citrus sinensis; type=EST; length=894bp
TTTTTTAAAGGCTAAAAAGTAAAAATCATAATTATGCAATTCTGCCACTA
TTTTAAGTTAACAAACAAATAGACTGAAACAATGTGTGTCAAAAGTAATA
ATCCTACTTAAATGACTGATGGAAAACATTGTGGGGTAAAATCAACATAT
GGTAGCATAACACATGCACTAGTCCACAAAACTGATCTCATCCTCGGAAA
ATCCTTTGCTAAAATGCCCCAACATGGTTATCTCAAAGAACGAGCATATG
TAAAGCCTATCTTGCAGGAGGTGGTGGAATGCGGGAGTTTGCCATTCCAA
CCCATGCAACAATTCCAACAGCAAGGATTACCCATCCAAATATATCGTAC
TTTAGATCACTGCTCTTCTTCTTGGAACTCTGTGCATTAGAAGCAGAAGA
TCCTCCACCGAGAGTCTGCTGATTAATTCCATGTTTATGGAGCTCCATGT
GCAGTTCCGGTGCCTTAGTACTGACTTCTAAAGATTTCTGATAGAGCTCA
TTAGTTGGTTCCTCATCTACTGCTCTTTGGAAACACTCTGACGCCTTATC
AAAATCACCTTTTGCCTCAGAGAGATCGGCAGTCAAAAATCCACAAGAGG
TGTGAGCATTTCCGAGACTCCATAAAGTATAATGCTTTGCAGGATCTATC
ACTAAAGCCTCCTCAAATTTTGAAATGGCTTCATTTATTATCTTCTTGGA
GTCAGAGACACTTTCAAATTGAGACAATTCAAGCAATGCTTCTCCCCACC
TTGTGAGATTGTCAGCATCGAGAGGGTCTTTGGCGTAATTAGCTTCAGCT
GTTTTACGATTGTGTTCGGACAACAAGAGCCGATCGAAATCGCTTTGTGA
GAATTCCATGTCTGAGGATTCAAGTGCAGGCGGCAGTTTTTGCT
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