CX047427

Overview
NameCX047427
Unique NameCX047427
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length804
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047427 vs. ExPASy Swiss-Prot
Match: TOM20_SOLTU (Mitochondrial import receptor subunit TOM20 OS=Solanum tuberosum GN=TOM20 PE=1 SV=1)

HSP 1 Score: 247.669 bits (631), Expect = 5.728e-65
Identity = 122/196 (62.24%), Postives = 149/196 (76.02%), Query Frame = 3
Query:   96 QSDFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSLEVSTKAPELHMELHKHGINQQTL--XXXXXXXXXXXXXXXXXDLKYDIFGWVILAVGIVAWVGMANSRIPPPP 677
            QS+FDRLL  EH RK+AE  YA++PLDADNLTRWG ALLELSQF+ V++SK++I++A SK EEAL ++P KH  LW LGNAHTS  FLT D+ EAK  F+KA++CFQ+A D +P+N+LY+KSLEV+ KAPELHME+H+HG  QQT+                   DLKYDIFGWVILAVGIVAWVG A S +PPPP
Sbjct:    4 QSEFDRLLFFEHARKSAETTYAQNPLDADNLTRWGGALLELSQFQPVAESKQMISDATSKLEEALTVNPEKHDALWCLGNAHTSHVFLTPDMDEAKVYFEKATQCFQQAFDADPSNDLYRKSLEVTAKAPELHMEIHRHGPMQQTMAAEPSTSTSTKSSKKTKSSDLKYDIFGWVILAVGIVAWVGFAKSNMPPPP 199          
BLAST of CX047427 vs. ExPASy Swiss-Prot
Match: TO202_ARATH (Mitochondrial import receptor subunit TOM20-2 OS=Arabidopsis thaliana GN=TOM20-2 PE=1 SV=2)

HSP 1 Score: 209.92 bits (533), Expect = 1.324e-53
Identity = 106/210 (50.48%), Postives = 136/210 (64.76%), Query Frame = 3
Query:   84 MEFSQSDFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSLEVSTKAPELHMELHKHGINQQTL----------XXXXXXXXXXXXXXXXXDLKYDIFGWVILAVGIVAWVGMANSRIPPPPAR 683
            MEFS +DF+RL++ EH RK +EA Y  DPLD++NL +WG ALLELSQF+ + ++K ++N+AISK EEAL I+P KH  LW + NA+T+  F   D  EAK  FDKA+E FQRA +E+P N+ Y+KSL+ S KAPELHM+    G+ QQ L                           +  YD+ GW+ILA GIVAWVGMA S  PPPPAR
Sbjct:    1 MEFSTADFERLIMFEHARKNSEAQYKNDPLDSENLLKWGGALLELSQFQPIPEAKLMLNDAISKLEEALTINPGKHQALWCIANAYTAHAFYVHDPEEAKEHFDKATEYFQRAENEDPGNDTYRKSLDSSLKAPELHMQFMNQGMGQQILGGGGGGGGGGMASSNVSQSSKKKKRNTEFTYDVCGWIILACGIVAWVGMAKSLGPPPPAR 210          
BLAST of CX047427 vs. ExPASy Swiss-Prot
Match: TO203_ARATH (Mitochondrial import receptor subunit TOM20-3 OS=Arabidopsis thaliana GN=TOM20-3 PE=1 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 2.496e-52
Identity = 102/200 (51.00%), Postives = 135/200 (67.50%), Query Frame = 3
Query:   93 SQSDFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSLEVSTKAPELHMELHKHGINQQTL---XXXXXXXXXXXXXXXXXDLKYDIFGWVILAVGIVAWVGMANSRIPPPPAR 683
            ++++FDR+LL E  R+ AE  Y  +PLDADNLTRWG  LLELSQF S+SD+K++I EAI+KFEEAL+IDP K   +W +GNA+TS  FLT D +EAK +FD A++ FQ+AVDE+P N  Y KSLE++ KAP+LH E +K G+  Q +                    D KYD  GWVILA+G+VAW+  A + +P  P R
Sbjct:    3 TETEFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQLHAEAYKQGLGSQPMGRVEAPAPPSSKAVKNKKSSDAKYDAMGWVILAIGVVAWISFAKANVPVSPPR 202          
BLAST of CX047427 vs. ExPASy Swiss-Prot
Match: TOM20_ORYSI (Probable mitochondrial import receptor subunit TOM20 OS=Oryza sativa subsp. indica GN=TOM20 PE=2 SV=2)

HSP 1 Score: 188.734 bits (478), Expect = 3.158e-47
Identity = 95/197 (48.22%), Postives = 126/197 (63.96%), Query Frame = 3
Query:   93 SQSDFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSLEVSTKAPELHMELHKHGINQQTLXXXXXXXXXXXXXXXXXDLKYDIFGWVILAVGIVAWVGMANSRIPPPPAR 683
            + SD +R+   +   + A+  Y ++P DADNLTRWG ALLELSQ  +  +S K + +A SK EEAL IDP K   LW LGNA TS GF T+D  +A   F+KA++CFQ+AVD EP N+LY+KSL++S+KAPELHME+H+   +Q +                  D  YD+FGWV+L VG+V WVG+A S  PP   R
Sbjct:    5 AMSDPERMFFFDLACQNAKVTYEQNPHDADNLTRWGGALLELSQMRNGPESLKCLEDAESKLEEALKIDPMKADALWCLGNAQTSHGFFTSDTVKANEFFEKATQCFQKAVDVEPANDLYRKSLDLSSKAPELHMEIHRQMASQASQAASSTSNTRQSRKKKDSDFWYDVFGWVVLGVGMVVWVGLAKSNAPPQAPR 201          
BLAST of CX047427 vs. ExPASy Swiss-Prot
Match: TOM20_ORYSJ (Probable mitochondrial import receptor subunit TOM20 OS=Oryza sativa subsp. japonica GN=TOM20 PE=2 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 5.955e-46
Identity = 95/198 (47.98%), Postives = 126/198 (63.64%), Query Frame = 3
Query:   93 SQSDFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSLEVSTKAPELHMELHKHGINQQT-LXXXXXXXXXXXXXXXXXDLKYDIFGWVILAVGIVAWVGMANSRIPPPPAR 683
            + SD +R+   +   + A+  Y ++P DADNLTRWG ALLELSQ  +  +S K + +A SK EEAL IDP K   LW LGNA TS GF T+D  +A   F+KA++CFQ+AVD EP N+LY+KSL++S+KAPELHME+H+   +Q +                   D  YD+FGWV+L VG+V WVG+A S  PP   R
Sbjct:    5 AMSDPERMFFFDLACQNAKVTYEQNPHDADNLTRWGGALLELSQMRNGPESLKCLEDAESKLEEALKIDPMKADALWCLGNAQTSHGFFTSDTVKANEFFEKATQCFQKAVDVEPANDLYRKSLDLSSKAPELHMEIHRQMASQASQAASSTSNTRQSRKKKKDSDFWYDVFGWVVLGVGMVVWVGLAKSNAPPQAPR 202          
BLAST of CX047427 vs. ExPASy Swiss-Prot
Match: TO204_ARATH (Mitochondrial import receptor subunit TOM20-4 OS=Arabidopsis thaliana GN=TOM20-4 PE=1 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 5.041e-45
Identity = 96/191 (50.26%), Postives = 127/191 (66.49%), Query Frame = 3
Query:   96 QSDFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSLEVSTKAPELHMELHKHGINQQTLXXXXXXXXXXXXXXXXXDLKYDIFGWVILAVGIVAWVGMANSRIP 668
            Q++ +RL++ EH RK AEA Y K+PLDA+NLTRW  ALLELSQF++  + K++I EAI K  EALVIDP KH  LW +GNAH S GFL++D +EA  +F+KAS+ FQ AV+E+P +ELY+KSL +++KAPELH                              + KYD+FGWVILA  +VAW+  ANS+ P
Sbjct:    4 QNENERLMVFEHARKVAEATYVKNPLDAENLTRWAGALLELSQFQT--EPKQMILEAILKLGEALVIDPKKHDALWLIGNAHLSFGFLSSDQTEASDNFEKASQFFQLAVEEQPESELYRKSLTLASKAPELHTG---------GTAGPSSNSAKTMKQKKTSEFKYDVFGWVILASYVVAWISFANSQTP 183          
BLAST of CX047427 vs. ExPASy Swiss-Prot
Match: TO201_ARATH (Mitochondrial import receptor subunit TOM20-1 OS=Arabidopsis thaliana GN=TOM20-1 PE=1 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 1.126e-36
Identity = 85/187 (45.45%), Postives = 114/187 (60.96%), Query Frame = 3
Query:  108 DRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSLEVSTKAPELHMELHKHGINQQT--LXXXXXXXXXXXXXXXXXDLKYDIFGWVILAVGIVAWVGMANSR 662
            D+L   E  RK AE  Y  +P DADNL RWGEALLELSQF++V DS K+I +AISK E+A++IDP KH  +W LGNA+TS   LT D ++A+ +F  A   F  AV ++P N++Y KSLE++ KAP+LH   HK+ +      +                 D KY + GWVILA+G+VA +     R
Sbjct:    2 DKLNFFEEIRKDAEETYKLNPEDADNLMRWGEALLELSQFQNVIDSLKMIQDAISKLEDAILIDPMKHDAVWCLGNAYTSYARLTPDDTQARLNFGLAYLFFGIAVAQQPDNQVYHKSLEMADKAPQLHTGFHKNRLLSLLGGVETLAIPSPKVVKNKKSSDEKYIVMGWVILAIGVVACISFRKLR 188          
The following BLAST results are available for this feature:
BLAST of CX047427 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
TOM20_SOLTU5.728e-6562.24Mitochondrial import receptor subunit TOM20 OS=Sol... [more]
TO202_ARATH1.324e-5350.48Mitochondrial import receptor subunit TOM20-2 OS=A... [more]
TO203_ARATH2.496e-5251.00Mitochondrial import receptor subunit TOM20-3 OS=A... [more]
TOM20_ORYSI3.158e-4748.22Probable mitochondrial import receptor subunit TOM... [more]
TOM20_ORYSJ5.955e-4647.98Probable mitochondrial import receptor subunit TOM... [more]
TO204_ARATH5.041e-4550.26Mitochondrial import receptor subunit TOM20-4 OS=A... [more]
TO201_ARATH1.126e-3645.45Mitochondrial import receptor subunit TOM20-1 OS=A... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS09_14B05_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-14B05-D9-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047427 ID=CX047427; Name=CX047427; organism=Citrus sinensis; type=EST; length=804bp
CTTTGGGCTGCCGCCCATATAATAGCGAACTCGGAGGTTTTAAGTTTCAG
CAAAAACTGCCGCCTGCACTTGAATCCTCAGACATGGAATTCTCACAAAG
CGATTTCGATCGGCTCTTGTTGTCCGAACACAATCGTAAAACAGCTGAAG
CTAATTACGCCAAAGACCCTCTCGATGCTGACAATCTCACAAGGTGGGGA
GAAGCATTGCTTGAATTGTCTCAATTTGAAAGTGTCTCTGACTCCAAGAA
GATAATAAATGAAGCCATTTCAAAATTTGAGGAGGCTTTAGTGATAGATC
CTGCAAAGCATTATACTTTATGGAGTCTCGGAAATGCTCACACCTCTTGT
GGATTTTTGACTGCCGATCTCTCTGAGGCAAAAGGTGATTTTGATAAGGC
GTCAGAGTGTTTCCAAAGAGCAGTAGATGAGGAACCAACTAATGAGCTCT
ATCAGAAATCTTTAGAAGTCAGTACTAAGGCACCGGAACTGCACATGGAG
CTCCATAAACATGGAATTAATCAGCAGACTCTCGGTGGAGGATCTTCTGC
TTCTAATGCACAGAGTTCCAAGAAGAAGAGCAGTGATCTAAAGTACGATA
TATTTGGATGGGTAATCCTTGCTGTTGGAATTGTTGCATGGGTTGGAATG
GCAAACTCCCGCATTCCACCACCTCCTGCAAGATAGGCTTTACATATGCT
CGTTCTTTGAGATAACCATGTTGGGGCATTTTAGCAAAGGATTTTCCGAG
GATGAGATCAGTTTTGTGGACTAGTGCATGTGTTATGCTACCATATGTTG
ATTT
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