CX047422

Overview
NameCX047422
Unique NameCX047422
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length517
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX047422 vs. ExPASy Swiss-Prot
Match: SPG1_SCHPO (Septum-promoting GTP-binding protein 1 OS=Schizosaccharomyces pombe GN=spg1 PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 2.385e-20
Identity = 46/89 (51.69%), Postives = 66/89 (74.16%), Query Frame = 2 
Query:    2 EARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNLPWTVKRNLTIGEPIIDF 268
            +AR +N+TA+PILIGTK+D F+  P + Q  I  QAR YAKAMKA+L F S +H+INV KIFK ++AK+F+L  T+     +G+PI+++
Sbjct:  107 QARGFNKTAVPILIGTKYDHFMTFPREDQEEITKQARRYAKAMKASLVFCSTSHSINVQKIFKIVLAKVFDLKCTIPEIKNVGDPILEY 195
[Close]
BLAST of CX047422 vs. ExPASy Swiss-Prot
Match: TEM1_YEAST (Protein TEM1 OS=Saccharomyces cerevisiae GN=TEM1 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.162e-13
Identity = 36/82 (43.90%), Postives = 52/82 (63.41%), Query Frame = 2 
Query:   17 NQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNLPWTVKRNLTIGEPII 262
            N +AIPIL+GTK+D  + L P+ Q  I+  +  YA+ M A L F S   +IN+ KIFK  +AK+FNL  T+     IG+P++
Sbjct:  122 NDSAIPILVGTKYDLLIDLDPEYQEQISRTSMKYAQVMNAPLIFCSTAKSINIQKIFKIALAKIFNLTLTIPEINEIGDPLL 203
The following BLAST results are available for this feature:
BLAST of CX047422 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
SPG1_SCHPO2.385e-2051.69Septum-promoting GTP-binding protein 1 OS=Schizosa... [more]
TEM1_YEAST2.162e-1343.90Protein TEM1 OS=Saccharomyces cerevisiae GN=TEM1 P... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS09_14B02_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-14B02-D3-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047422 ID=CX047422; Name=CX047422; organism=Citrus sinensis; type=EST; length=517bp
TGAAGCCAGAAAGTGGAACCAGACAGCGATTCCCATATTGATAGGGACCA
AATTTGATGATTTTGTGAGACTCCCACCAGATTTGCAATGGACTATTGCA
ACTCAGGCGAGGGCATATGCAAAGGCAATGAAAGCAACCCTTTTCTTCTC
AAGTGCTACGCACAACATAAATGTCAACAAAATTTTCAAGTTCATAATGG
CCAAGCTTTTTAACTTGCCGTGGACGGTAAAGAGAAACTTGACTATCGGA
GAGCCGATTATCGACTTCTGAAAATTCACTTCACAGTGATGATTTTTCTT
CATTTTCTTGTACATACCCAGAAAGAGAGAAAATGAAAAAGGCAAAAGAT
AGCAGCAAGTCAATATTTTCCTAGAAAATTAACTCCATAGCCCACCTAGG
TGTCCTTTTTTAAATATTCTGTCCTTGTTTCGGCATGGAATCAGATGCCA
CATGGGTGCTTGAGTGCCACAAGGAATTAATATATGATTTCAGTTGATTC
TTAAAAAAAAAAAAAAA
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