CX047420

Overview
NameCX047420
Unique NameCX047420
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length787
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX047420 vs. ExPASy Swiss-Prot
Match: C72A1_CATRO (Secologanin synthase OS=Catharanthus roseus GN=CYP72A1 PE=2 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 5.527e-49
Identity = 91/199 (45.73%), Postives = 136/199 (68.34%), Query Frame = 3 
Query:  195 EMELPLKSIALTIVIVTVLTWAWRVLNWVWLRPKKLEKFLRQQGLKGNSYRLLFGDLKENFIELKEAKARPLSLDDDIAIRVNPFLHKLVNDYGKNSFMWFGPTPRVNIMNPDQIKEIFTRINDFQKVNSI--PLSRLLIVGLATLEGEKWAKHRKLINPAFHQEKLKLMLPAFYLSCIEIITKWEKQMSVEGSSELDV 785
            +M+   K+IA TI  + V+ WAWRVL+W W  PK++EK LRQQG +GN YR L GD+KE+    +EA ++P+  ++DI  R+ P ++  +N YG+NSF W G  PR+++M P+ IKE+ T  + +QK   +  PL + L+ G+ + EG KW+KHR++I+PAF  EKLK MLPAF +   +++TKWEK    +GS E+D+
Sbjct:    4 DMDTIRKAIAATIFAL-VMAWAWRVLDWAWFTPKRIEKRLRQQGFRGNPYRFLVGDVKESGKMHQEALSKPMEFNNDIVPRLMPHINHTINTYGRNSFTWMGRIPRIHVMEPELIKEVLTHSSKYQKNFDVHNPLVKFLLTGVGSFEGAKWSKHRRIISPAFTLEKLKSMLPAFAICYHDMLTKWEKIAEKQGSHEVDI 201
The following BLAST results are available for this feature:
BLAST of CX047420 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
C72A1_CATRO5.527e-4945.73Secologanin synthase OS=Catharanthus roseus GN=CYP... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS09_14A12_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-14A12-B23-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047420 ID=CX047420; Name=CX047420; organism=Citrus sinensis; type=EST; length=787bp
CAAGCTTGACACGTATCGTTAACACCGCTTACTGGGGACAATGTCTTTGT
CCGGGGAAATTCTGAAATCATCGATCCAGAAAACACCTAATCAAAAACAC
ATGCAAAGGAAAACGATTTTCTCATTCGCTTGATGACTATATATACCATT
CTCGTTCGTCTCTGCAAATTTAAACCCACAAAATCTGTCGGTGTGAAATG
GAGTTGCCTCTGAAATCCATAGCTTTGACCATTGTTATTGTAACGGTGCT
AACATGGGCATGGAGAGTGCTGAACTGGGTGTGGCTGAGGCCCAAGAAGC
TGGAGAAATTCCTGAGACAGCAAGGTTTAAAAGGCAATTCTTACAGGCTT
CTGTTTGGTGACTTGAAAGAAAATTTCATCGAGTTGAAGGAAGCAAAAGC
CAGACCCCTCAGTTTGGATGACGATATTGCTATTCGTGTCAATCCATTCC
TTCATAAACTGGTAAATGATTATGGTAAGAATTCTTTCATGTGGTTTGGT
CCGACACCAAGGGTGAATATTATGAATCCTGATCAAATAAAAGAGATATT
TACCAGGATCAATGATTTTCAAAAAGTCAATTCAATCCCACTTTCCAGGC
TGCTGATAGTTGGATTGGCTACCCTTGAGGGGGAGAAGTGGGCTAAACAT
AGAAAACTCATCAACCCAGCCTTCCACCAAGAGAAGCTCAAGCTTATGTT
GCCAGCATTCTACTTGAGTTGTATCGAAATAATTACAAAATGGGAGAAGC
AAATGTCTGTAGAAGGATCATCTGAGTTGGATGTATG
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