CX047414

Overview
NameCX047414
Unique NameCX047414
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length851
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10065 contig Csv1_Contig10065:27..877. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX047414 vs. ExPASy Swiss-Prot
Match: YCP9_SCHPO (Uncharacterized oxidoreductase C663.09c OS=Schizosaccharomyces pombe GN=SPCC663.09c PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.415e-16
Identity = 68/229 (29.69%), Postives = 108/229 (47.16%), Query Frame = 3
Query:  156 VSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGSGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLS----RPFQRNVPEGKLFTKEFSV 830
            V  + G +RGIGL   K+L  +     V A+ R P  AT L +     P  +  ++LD+T + +   +A+S+ +    +++L   SGI       Q   T+ +  +      Y+ N +GPI V K   PLL       ++    V   S+  GS+GD R  G+ +Y  SKAA+N   K +SVE   +    I I  HPG V TD++    + F    PE   + K+ ++
Sbjct:    7 VYFIAGGNRGIGLSLVKELSSREGT-TVFASARKPEAATELQEWSKSHPN-VKTVELDVTSQQSANEAAQSVAKAVDGIDVLWLNSGIC------QSYYTVMEAPEEVWNAHYQTNVLGPIHVFKAFYPLLT------KKKTRQVIFTSSECGSMGDFRATGFSAYGQSKAAINFTMKELSVELADEHFTFISI--HPGVVKTDMNADAIKKFTETSPEMLTYLKKVTI 219          
BLAST of CX047414 vs. ExPASy Swiss-Prot
Match: YIV6_YEAST (Uncharacterized oxidoreductase YIR036C OS=Saccharomyces cerevisiae GN=YIR036C PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 8.588e-14
Identity = 59/220 (26.82%), Postives = 103/220 (46.82%), Query Frame = 3
Query:  150 GGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRF-PERLDVLQLDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGSGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNV-PEG 803
            G V L+ GASRGIGL+  K ++E++D+  V    R      GL  L+  +  ++     LD+T  S +EA  + I++K+G L+ ++  +G+L     +    + + +++   +  ++VN    + ++    PLLK            V N+             GW +Y  SKAALN     ++ E    K   +CI   PG VDT + +  +  + P+G
Sbjct:    2 GKVILITGASRGIGLQLVKTVIEEDDECIVYGVART---EAGLQSLQREYGADKFVYRVLDITDRSRMEALVEEIRQKHGKLDGIVANAGMLEPVKSISQSNSEHDIKQWERL--FDVNFFSIVSLVALCLPLLK--------SSPFVGNIVFVSSGASVKPYNGWSAYGCSKAALNHFAMDIASEEPSDKVRAVCIA--PGVVDTQMQKDIRETLGPQG 206          
BLAST of CX047414 vs. ExPASy Swiss-Prot
Match: YJNK_SCHPO (Uncharacterized oxidoreductase C24B10.20 OS=Schizosaccharomyces pombe GN=SPCC24B10.20 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.913e-13
Identity = 61/207 (29.47%), Postives = 105/207 (50.72%), Query Frame = 3
Query:  150 GGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGSGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDL 770
            G V ++ G +RGIGL   K+L  K     V A+ R P  A+ L D  ++    + +++LD+T   + + +A  +++    +++L   SGI       QP   + K      M  Y+ N +GPI V +    LLK G     +++   ++++A +G +  N    + +Y  SKAALN   K +S E   +KD  + + +HPG V+TD+
Sbjct:    6 GIVYVIVGGNRGIGLSLVKELSNKEGV-TVFASARGPGSASELKDW-SKTHSNVHIIKLDVTSLRSAKDAAMQVEKVVKCIDVLWVNSGI---SKSFQP---VLKTSDELWMSHYQTNVLGPIHVYQAFYHLLKEGKL---KNIVFTSSMAACMGGVRPNT---YSAYGQSKAALNYTMKEISFEL--EKDGFVVVSIHPGVVNTDM 196          
BLAST of CX047414 vs. ExPASy Swiss-Prot
Match: YCP6_SCHPO (Uncharacterized oxidoreductase C663.06c OS=Schizosaccharomyces pombe GN=SPCC663.06c PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.620e-12
Identity = 64/220 (29.09%), Postives = 104/220 (47.27%), Query Frame = 3
Query:  156 VSLVQGASRGIGLEFAKQLLEKNDKGCVI-ATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVL--QPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGSGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPEGK 806
            +  + G +RGIGL   K+L   N +G V+ A+ R P  AT L +  ++    + +++LD++   +   +A+ + +  G +++L   SGI    N +   P+   N          Y+ N +GPI V +   PL+K G S       ++   S+ VGS+G         Y  SKAALN   K +S E   + +  I I +HPG V TD ++       E K
Sbjct:    7 IYFIAGGNRGIGLSLVKEL--SNREGTVVFASARKPEAATELQEW-SKSHSNVHIIKLDISSLESANEAAQEVAKAVGKVDVLWVNSGIFHSFNTVLNTPDDVWNS--------HYKTNVLGPIHVYQAFYPLVKKGES------KIIVFTSSLVGSMGAFFPFNQSGYGQSKAALNFTMKEISFEL--QDEGFIVISIHPGMVRTDSAQEAVNQHAEAK 207          
BLAST of CX047414 vs. ExPASy Swiss-Prot
Match: YCP8_SCHPO (Uncharacterized oxidoreductase C663.08c OS=Schizosaccharomyces pombe GN=SPCC663.08c PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.763e-12
Identity = 66/230 (28.70%), Postives = 110/230 (47.83%), Query Frame = 3
Query:  156 VSLVQGASRGIGLEFAKQLLEKNDKGCVI-ATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYGSLNLL-INASGILSI-PNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGSGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPEGK-----LFTKE 821
            +  + G +RGIGL   K+L   N KG V+ A+ R P  AT L +  ++    + +++LD++   +   +A+ + +   ++++L +N++   S  P V  P+   N          Y+ N +GPI V +   PL+K G S       ++   S+  GS+G        +Y  SKAALN   K +S E   + +  I I +HPG V TD ++       E K     LF K+
Sbjct:    7 IYFIAGGNRGIGLSLVKEL--SNRKGTVVFASARKPGAATKLQEW-SKSHSNVHIIKLDVSSLESANEAAQEVTKVVDAVDVLWVNSAVFHSFGPVVNTPDDVWNS--------HYKTNVLGPIHVYQAFYPLIKKGRS------KIIVFTSSLAGSMGAFFPSSQSAYGQSKAALNYTMKEISFEL--QDEGFIVISIHPGAVRTDSAQEIVNQHAEKKPEILDLFAKQ 217          
BLAST of CX047414 vs. ExPASy Swiss-Prot
Match: CSGA_MYXXA (C-factor OS=Myxococcus xanthus GN=csgA PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.155e-12
Identity = 43/132 (32.58%), Postives = 74/132 (56.06%), Query Frame = 3
Query:  384 GSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGSGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRP 779
            G +++LIN +G+  +         L  V+ + +   + +NA+GP+ V   M P L+ G       +  VA++++R+GS+  N  GG ++YR SKAALN   +S+S +   + +  + +LLHPG V TD+  P
Sbjct:   11 GPVDVLINNAGVSGL------WCALGDVDYADMARTFTINALGPLRVTSAMLPGLRQGA------LRRVAHVTSRMGSLAANTDGGAYAYRMSKAALNMAVRSMSTDL--RPEGFVTVLLHPGWVQTDMGGP 128          
The following BLAST results are available for this feature:
BLAST of CX047414 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
YCP9_SCHPO2.415e-1629.69Uncharacterized oxidoreductase C663.09c OS=Schizos... [more]
YIV6_YEAST8.588e-1426.82Uncharacterized oxidoreductase YIR036C OS=Saccharo... [more]
YJNK_SCHPO1.913e-1329.47Uncharacterized oxidoreductase C24B10.20 OS=Schizo... [more]
YCP6_SCHPO1.620e-1229.09Uncharacterized oxidoreductase C663.06c OS=Schizos... [more]
YCP8_SCHPO2.763e-1228.70Uncharacterized oxidoreductase C663.08c OS=Schizos... [more]
CSGA_MYXXA6.155e-1232.58C-factor OS=Myxococcus xanthus GN=csgA PE=1 SV=1[more]
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Properties
Property NameValue
Genbank descriptionUCRCS09_14A09_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-14A09-B17-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047414 ID=CX047414; Name=CX047414; organism=Citrus sinensis; type=EST; length=851bp
CTCTTTCAGAAGAGACTTAGCAAAAAGGCTTCTTTTTCCTTCCTTTTCCC
TTGAGCCAAAGTGCAAGCATGGCAAATTCACTGTTTGCTTTCAGATCAAT
CAGAAAGGTTGCTTTTACGTCTTCTGCTTCTGCTTCTGTGAAATGGAAAG
GTGGGGTTTCCTTGGTTCAAGGAGCTTCTAGAGGAATTGGCCTTGAATTT
GCTAAGCAACTGCTGGAGAAAAATGATAAAGGCTGTGTTATTGCCACCTG
TCGTAATCCAAATGGGGCAACAGGTCTTCTTGACTTGAAAAATAGGTTTC
CTGAACGACTTGACGTTTTACAGTTGGATTTGACAGTGGAAAGCACCATA
GAGGCATCTGCAAAGTCTATAAAAGAAAAATATGGCTCTTTGAACCTTCT
CATTAATGCTTCTGGCATTCTCTCAATACCGAATGTCTTGCAACCAGAAA
CAACGTTAAACAAAGTAGAGAAATCATCCTTGATGCTTGCTTATGAGGTT
AATGCGGTGGGTCCTATCCTAGTGATAAAGCATATGTCGCCTCTTCTTAA
AGTCGGAGGCAGTGGGATTGAGAGGGATGTTGCTGTTGTGGCCAATTTAA
GTGCCAGGGTAGGATCCATTGGGGACAATCGCCTAGGTGGGTGGCACTCT
TATCGAGCATCAAAGGCTGCCCTTAATCAGTTGACAAAATCTGTGTCAGT
GGAGTTTGGTCGAAAGAAGGATCCAGTTATATGTATTCTGTTGCATCCAG
GCACTGTAGATACTGATCTTTCTCGGCCATTTCAGAGAAATGTTCCAGAA
GGCAAGCTTTTCACCAAAGAATTCTCGGTGCAGAAGCTGGTTAACATCAT
C
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