CX047408

Overview
NameCX047408
Unique NameCX047408
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length766
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4721 contig Csv1_Contig4721:16..781. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX047408 vs. ExPASy Swiss-Prot
Match: OLEO1_PRUDU (Oleosin 1 OS=Prunus dulcis GN=OLE1 PE=2 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.658e-42
Identity = 90/132 (68.18%), Postives = 105/132 (79.55%), Query Frame = 3
Query:   51 EHYQP--HEQTQLQSRQPRSHQXXXXXXXXXXGGSLLVLSGLTMAGTVIALTIATPLLVICSPVLVPAVITVSLLIMGFLASGGFGVAAISVLSWIYRYVTGGHPPGADQLEQARMKLASKAREMRDRAEQF 440
            +H+Q   H Q     +QPRS+Q          GGSLLVLSGL +AGTVIALTIATPLLVI SPVLVPA+ITV+L+ MGFL SGGFGVAA++VLSWIY+YVTG  PPGADQL+QAR KLA KAR+++DRAEQF
Sbjct:    4 QHFQQPLHFQGSYGQQQPRSYQVAKAATAVTAGGSLLVLSGLVLAGTVIALTIATPLLVIFSPVLVPALITVALITMGFLTSGGFGVAAVTVLSWIYKYVTGKQPPGADQLDQARHKLAGKARDIKDRAEQF 135          
BLAST of CX047408 vs. ExPASy Swiss-Prot
Match: OLEO1_ARATH (Oleosin 18.5 kDa OS=Arabidopsis thaliana GN=At4g25140 PE=1 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.151e-35
Identity = 76/127 (59.84%), Postives = 97/127 (76.38%), Query Frame = 3
Query:   69 EQTQLQSR---QPRSHQXXXXXXXXXXGGSLLVLSGLTMAGTVIALTIATPLLVICSPVLVPAVITVSLLIMGFLASGGFGVAAISVLSWIYRYVTGGHPPGADQLEQARMKLASKAREMRDRAEQF 440
            +Q Q+  R     +S Q          GGSLLVLS LT+ GTVIALT+ATPLLVI SP+LVPA+ITV+LLI GFL+SGGFG+AAI+V SWIY+Y TG HP G+D+L+ ARMKL SKA++++DRA+ +
Sbjct:   26 DQYQMSGRGSDYSKSRQIAKAATAVTAGGSLLVLSSLTLVGTVIALTVATPLLVIFSPILVPALITVALLITGFLSSGGFGIAAITVFSWIYKYATGEHPQGSDKLDSARMKLGSKAQDLKDRAQYY 152          
BLAST of CX047408 vs. ExPASy Swiss-Prot
Match: OLEO3_BRANA (Oleosin Bn-III OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.564e-35
Identity = 72/114 (63.16%), Postives = 92/114 (80.70%), Query Frame = 3
Query:   99 RSHQXXXXXXXXXXGGSLLVLSGLTMAGTVIALTIATPLLVICSPVLVPAVITVSLLIMGFLASGGFGVAAISVLSWIYRYVTGGHPPGADQLEQARMKLASKAREMRDRAEQF 440
            +S Q          GGSLLVLS LT+ GTVIALT+ATPLLVI SP+LVPA+ITV++LI GFL+SGGFG+AAI+V SWIY+Y TG HP G+D+L+ ARMKL SKA++++DRA+ +
Sbjct:   53 KSRQIAKAVTAVTAGGSLLVLSSLTLVGTVIALTVATPLLVIFSPILVPALITVAMLITGFLSSGGFGIAAITVFSWIYKYATGEHPQGSDKLDSARMKLGSKAQDLKDRAQYY 166          
BLAST of CX047408 vs. ExPASy Swiss-Prot
Match: OLEO2_BRANA (Major oleosin NAP-II (Fragment) OS=Brassica napus PE=1 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 5.713e-35
Identity = 72/114 (63.16%), Postives = 90/114 (78.95%), Query Frame = 3
Query:   99 RSHQXXXXXXXXXXGGSLLVLSGLTMAGTVIALTIATPLLVICSPVLVPAVITVSLLIMGFLASGGFGVAAISVLSWIYRYVTGGHPPGADQLEQARMKLASKAREMRDRAEQF 440
            +S Q          GGSLLVLS LT+ GTVIALT+ATPLLVI SP+LVPA+ITV+LLI GFL+SGGFG+AAI+V SWIY+Y TG HP G+D+L+ ARMKL  K ++M+DRA+ +
Sbjct:   41 KSRQIAKAVTAVTAGGSLLVLSSLTLVGTVIALTVATPLLVIFSPILVPALITVALLITGFLSSGGFGIAAITVFSWIYKYATGEHPQGSDKLDSARMKLGGKVQDMKDRAQYY 154          
BLAST of CX047408 vs. ExPASy Swiss-Prot
Match: OLEO5_BRANA (Oleosin Bn-V (Fragment) OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 3.135e-33
Identity = 71/111 (63.96%), Postives = 87/111 (78.38%), Query Frame = 3
Query:   99 RSHQXXXXXXXXXXGGSLLVLSGLTMAGTVIALTIATPLLVICSPVLVPAVITVSLLIMGFLASGGFGVAAISVLSWIYRYVTGGHPPGADQLEQARMKLASKAREMRDRA 431
            +S Q          G SLLVLS LT+ GTVIAL +ATPLLVI SP+LVPA+ITV+LLI GFL+SG FG+AAI+V SWIY+Y TG HP G+D+L+ ARMKL SKA++M+DRA
Sbjct:   41 KSRQIAKATTAVTAGDSLLVLSSLTLVGTVIALIVATPLLVIFSPILVPALITVALLITGFLSSGAFGIAAITVFSWIYKYATGEHPQGSDKLDSARMKLGSKAQDMKDRA 151          
BLAST of CX047408 vs. ExPASy Swiss-Prot
Match: OLEO1_MAIZE (Oleosin Zm-I OS=Zea mays GN=OLE16 PE=2 SV=2)

HSP 1 Score: 140.198 bits (352), Expect = 1.191e-32
Identity = 69/123 (56.10%), Postives = 90/123 (73.17%), Query Frame = 3
Query:   66 HEQTQLQSRQPRSHQXXXXXXXXXXGGSLLVLSGLTMAGTVIALTIATPLLVICSPVLVPAVITVSLLIMGFLASGGFGVAAISVLSWIYRYVTGGHPPGADQLEQARMKLASKAREMRDRAE 434
            H + Q Q +Q               GGS+LVLSGL +AGTVIALT+ATP+LVI SPVLVPA I ++L+  GF+ SGG GVAA+SV SW+Y+Y+TG HPP ADQL+ A+ +LASKAR+++D A+
Sbjct:   25 HGEAQQQQKQGAMMTALKAATAATFGGSMLVLSGLILAGTVIALTVATPVLVIFSPVLVPAAIALALMAAGFVTSGGLGVAALSVFSWMYKYLTGKHPPAADQLDHAKARLASKARDVKDAAQ 147          
BLAST of CX047408 vs. ExPASy Swiss-Prot
Match: OLE16_BROSE (Oleosin 16 kDa OS=Bromus secalinus GN=OLE16 PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.556e-32
Identity = 69/122 (56.56%), Postives = 91/122 (74.59%), Query Frame = 3
Query:   69 EQTQLQSRQPRSHQXXXXXXXXXXGGSLLVLSGLTMAGTVIALTIATPLLVICSPVLVPAVITVSLLIMGFLASGGFGVAAISVLSWIYRYVTGGHPPGADQLEQARMKLASKAREMRDRAE 434
            +  Q Q +QP              GGS+LVLSGL +AGTVIALT+ATP+LVI SPVLVPA I+++L+  GF+ SGG GVAA+SV SW+Y+Y+ G HPPGADQL+ A+ +LASKAR+++D A+
Sbjct:   37 DDEQHQQKQPVMMCALKAATAATAGGSMLVLSGLILAGTVIALTVATPVLVIFSPVLVPAAISMALMSAGFVTSGGLGVAAVSVFSWMYKYLAGKHPPGADQLDHAKARLASKARDIKDAAQ 158          
BLAST of CX047408 vs. ExPASy Swiss-Prot
Match: OLEO1_ORYSJ (Oleosin 16 kDa OS=Oryza sativa subsp. japonica GN=OLE16 PE=2 SV=2)

HSP 1 Score: 138.658 bits (348), Expect = 3.466e-32
Identity = 65/98 (66.33%), Postives = 85/98 (86.73%), Query Frame = 3
Query:  141 GGSLLVLSGLTMAGTVIALTIATPLLVICSPVLVPAVITVSLLIMGFLASGGFGVAAISVLSWIYRYVTGGHPPGADQLEQARMKLASKAREMRDRAE 434
            GGS+LVLSGL +AGTVIALT+ATP+LVI SPVLVPA I ++L+  GF+ SGG GVAA+SV SW+Y+Y+TG HPPGADQL+ A+ +LASKAR++++ A+
Sbjct:   42 GGSMLVLSGLILAGTVIALTVATPVLVIFSPVLVPAAIALALMAAGFVTSGGLGVAALSVFSWMYKYLTGKHPPGADQLDHAKARLASKARDIKEAAQ 139          
BLAST of CX047408 vs. ExPASy Swiss-Prot
Match: OLEO3_ARATH (Oleosin 14.9 kDa OS=Arabidopsis thaliana GN=OL3 PE=2 SV=2)

HSP 1 Score: 135.961 bits (341), Expect = 2.247e-31
Identity = 68/123 (55.28%), Postives = 91/123 (73.98%), Query Frame = 3
Query:   54 HYQPHEQTQLQSRQPRSHQXXXXXXXXXXGGSLLVLSGLTMAGTVIALTIATPLLVICSPVLVPAVITVSLLIMGFLASGGFGVAAISVLSWIYRYVTGGHPPGADQLEQARMKLASKAREMR 422
            H++   +   Q   P++ Q          GGSLLVLSGLT+AGTVIALT+ATPLLVI SPVLVPAV+TV+L+I GFLASGGFG+AAI+  SW+YR++TG    G+D++E ARMK+ S+ ++ +
Sbjct:    8 HHEMISRDSTQEAHPKARQMVKAATAVTAGGSLLVLSGLTLAGTVIALTVATPLLVIFSPVLVPAVVTVALIITGFLASGGFGIAAITAFSWLYRHMTGS---GSDKIENARMKVGSRVQDTK 127          
BLAST of CX047408 vs. ExPASy Swiss-Prot
Match: OLEO1_SOYBN (P24 oleosin isoform A OS=Glycine max PE=2 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 1.082e-17
Identity = 46/116 (39.66%), Postives = 65/116 (56.03%), Query Frame = 3
Query:   90 RQPRSHQXXXXXXXXXXGGSLLVLSGLTMAGTVIALTIATPLLVICSPVLVPAVITVSLLIMGFLASGGFGVAAISVLSWIYRYVTGGHPPGADQLEQARMKLASKAREMRDRAEQ 437
            R P + Q          GG LL+L+GLT+AGT+  L +ATPL V+ SPVLVPA + + L + GFL SG FG+ A+S  SWI  Y+    P   +    A+  LA  A  +  + ++
Sbjct:   49 RGPTTSQVLAVLAGLPVGGILLLLAGLTLAGTLTGLAVATPLFVLFSPVLVPATVAIGLAVAGFLTSGAFGLTALSSFSWILNYIRETQPASENLAAAAKHHLAEAAEYVGQKTKE 164          
The following BLAST results are available for this feature:
BLAST of CX047408 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
OLEO1_PRUDU1.658e-4268.18Oleosin 1 OS=Prunus dulcis GN=OLE1 PE=2 SV=1[more]
OLEO1_ARATH1.151e-3559.84Oleosin 18.5 kDa OS=Arabidopsis thaliana GN=At4g25... [more]
OLEO3_BRANA2.564e-3563.16Oleosin Bn-III OS=Brassica napus PE=2 SV=1[more]
OLEO2_BRANA5.713e-3563.16Major oleosin NAP-II (Fragment) OS=Brassica napus ... [more]
OLEO5_BRANA3.135e-3363.96Oleosin Bn-V (Fragment) OS=Brassica napus PE=2 SV=... [more]
OLEO1_MAIZE1.191e-3256.10Oleosin Zm-I OS=Zea mays GN=OLE16 PE=2 SV=2[more]
OLE16_BROSE1.556e-3256.56Oleosin 16 kDa OS=Bromus secalinus GN=OLE16 PE=2 S... [more]
OLEO1_ORYSJ3.466e-3266.33Oleosin 16 kDa OS=Oryza sativa subsp. japonica GN=... [more]
OLEO3_ARATH2.247e-3155.28Oleosin 14.9 kDa OS=Arabidopsis thaliana GN=OL3 PE... [more]
OLEO1_SOYBN1.082e-1739.66P24 oleosin isoform A OS=Glycine max PE=2 SV=2[more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_14A06_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-14A06-B11-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047408 ID=CX047408; Name=CX047408; organism=Citrus sinensis; type=EST; length=766bp
ATCATCGACAAATAATCGCCGTTAGATTTAACATCAACACTGATATGGCT
GAACATTACCAACCACACGAGCAGACACAGCTGCAGAGCCGTCAGCCCCG
GTCCCACCAGGTCGTGAAGGCGGCAACCGCCGTCACAGCCGGTGGGTCTC
TGTTGGTCCTCTCTGGCTTAACCATGGCTGGGACTGTCATTGCACTGACC
ATTGCTACTCCACTGCTAGTCATATGTAGTCCTGTTCTTGTCCCTGCGGT
TATCACCGTTTCTCTTCTCATCATGGGGTTCTTGGCCTCTGGCGGATTCG
GTGTAGCAGCCATCAGCGTCTTATCATGGATTTATAGGTATGTCACAGGG
GGGCACCCACCAGGGGCGGATCAGCTGGAGCAGGCGCGGATGAAGCTGGC
CAGTAAGGCTAGGGAGATGAGGGACAGGGCTGAGCAGTTTGGGCAGCAGC
AAAGCACTGGCTCGCAGCCGGGTTCTTAAACTACGTAGTTATGCATGTGA
TGAAGGGTTGTTGGTTGATAAAGATATGGGTGGAGATCAAACGGCTATGA
TACTAGTTGAGGGGTCATTGGTTGTCTTTTGTGTTAATTTGTGTCAATGT
GTTTTTTCCTTTTTTGTATTCGTGGTAATCTTTGTAATAAGTTTTGTTAA
TGTGGTGGGGCGCTCTTGCAGGGTTTTTATTATTGGTCTTTGAAATGTAA
TATGTCTTGTGATTTTTGTTTTAACTTTTCAGTTTCTTTAATTTTACAAA
ATTTGGTTGTTATTAA
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