FC921969

Overview
NameFC921969
Unique NameFC921969
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length266
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12709 contig Csv1_Contig12709:1531..1796. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921969 vs. ExPASy Swiss-Prot
Match: LOX23_HORVU (Lipoxygenase 2.3, chloroplastic OS=Hordeum vulgare GN=LOX2.3 PE=1 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 5.035e-31
Identity = 59/85 (69.41%), Postives = 66/85 (77.65%), Query Frame = 1
Query:    7 RTIFFLTPAGTLTPIAIELTRPPMNGKPQWKQVFLPSSKSTECWLWKLAKAHVLAHDAGYHQLVSHWLRNHCCTETYLISTNRQL 261
            RT+FFL+  GTL P+AIELTRP    KPQWK+ F   S +TE WLWKLAKAHVL HD GYHQLVSHWLR H C E Y+I+TNRQL
Sbjct:  491 RTVFFLSDEGTLMPLAIELTRPQSPTKPQWKRAFTHGSDATESWLWKLAKAHVLTHDTGYHQLVSHWLRTHACVEPYIIATNRQL 575          
BLAST of FC921969 vs. ExPASy Swiss-Prot
Match: LOX2_ARATH (Lipoxygenase 2, chloroplastic OS=Arabidopsis thaliana GN=LOX2 PE=1 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 8.588e-31
Identity = 56/85 (65.88%), Postives = 65/85 (76.47%), Query Frame = 1
Query:    7 RTIFFLTPAGTLTPIAIELTRPPMNGKPQWKQVFLPSSKSTECWLWKLAKAHVLAHDAGYHQLVSHWLRNHCCTETYLISTNRQL 261
            RT+FFL+   TL P+AIELT PP   KPQWKQVF P   +T CWLW LAK H ++HDAGYHQL+SHWLR H CTE Y+I+ NRQL
Sbjct:  489 RTLFFLSDDSTLRPVAIELTCPPNINKPQWKQVFTPGYDATSCWLWNLAKTHAISHDAGYHQLISHWLRTHACTEPYIIAANRQL 573          
BLAST of FC921969 vs. ExPASy Swiss-Prot
Match: LOX21_HORVU (Lipoxygenase 2.1, chloroplastic OS=Hordeum vulgare GN=LOX2.1 PE=1 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 3.608e-29
Identity = 59/87 (67.82%), Postives = 65/87 (74.71%), Query Frame = 1
Query:    7 RTIFFLTPAGTLTPIAIELTRPPMNGKPQWKQVFLPSSKS--TECWLWKLAKAHVLAHDAGYHQLVSHWLRNHCCTETYLISTNRQL 261
            R +FFLT  GTL PIAIELTRP    KPQW+QVF P      T  WLW+LAKAH+LAHDAG HQLVSHWLR H CTE Y+I+ NRQL
Sbjct:  520 RALFFLTADGTLRPIAIELTRPKSKKKPQWRQVFTPGCDGSVTGSWLWQLAKAHILAHDAGVHQLVSHWLRTHACTEPYIIAANRQL 606          
BLAST of FC921969 vs. ExPASy Swiss-Prot
Match: LOXC2_ORYSJ (Probable lipoxygenase 8, chloroplastic OS=Oryza sativa subsp. japonica GN=CM-LOX2 PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 4.712e-29
Identity = 54/85 (63.53%), Postives = 68/85 (80.00%), Query Frame = 1
Query:    7 RTIFFLTPAGTLTPIAIELTRPPMNGKPQWKQVFLPSSKSTECWLWKLAKAHVLAHDAGYHQLVSHWLRNHCCTETYLISTNRQL 261
            RTIFFLT  GTL  +AIELTRP    +PQW+QVF PS+ +T+ WLW++AKAHV AHDAG+H+L++HWLR HC  E Y+I+ NRQL
Sbjct:  533 RTIFFLTDDGTLRLLAIELTRPASPSQPQWRQVFTPSTDTTKSWLWRMAKAHVRAHDAGHHELITHWLRTHCAVEPYIIAANRQL 617          
BLAST of FC921969 vs. ExPASy Swiss-Prot
Match: LOXC1_ORYSJ (Lipoxygenase 7, chloroplastic OS=Oryza sativa subsp. japonica GN=CM-LOX1 PE=2 SV=2)

HSP 1 Score: 124.79 bits (312), Expect = 1.371e-28
Identity = 53/85 (62.35%), Postives = 67/85 (78.82%), Query Frame = 1
Query:    7 RTIFFLTPAGTLTPIAIELTRPPMNGKPQWKQVFLPSSKSTECWLWKLAKAHVLAHDAGYHQLVSHWLRNHCCTETYLISTNRQL 261
            RT+FFLT  GTL  +AIELTRP    +PQW+QVF PS+ +T  WLW++AKAHV AHDAG+H+L++HWLR HC  E Y+I+ NRQL
Sbjct:  516 RTVFFLTDDGTLQLLAIELTRPASPSQPQWRQVFTPSTDATMSWLWRMAKAHVRAHDAGHHELITHWLRTHCAVEPYIIAANRQL 600          
BLAST of FC921969 vs. ExPASy Swiss-Prot
Match: LOX22_HORVU (Lipoxygenase 2.2, chloroplastic OS=Hordeum vulgare GN=LOX2.2 PE=1 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 5.760e-27
Identity = 56/89 (62.92%), Postives = 63/89 (70.79%), Query Frame = 1
Query:    7 RTIFFLTPAGTLTPIAIELTRPPMNGKPQWKQVFLPSS----KSTECWLWKLAKAHVLAHDAGYHQLVSHWLRNHCCTETYLISTNRQL 261
            RT+FFL   GTL PIAIELTRP    K QW++VF P S      T  W W+LAK HVL+HD GYHQLVSHWLR HCC E Y+I+ NRQL
Sbjct:  519 RTLFFLADDGTLRPIAIELTRPKSPHKQQWRKVFTPGSGYSGSVTGSWEWQLAKIHVLSHDTGYHQLVSHWLRTHCCVEPYVIAANRQL 607          
BLAST of FC921969 vs. ExPASy Swiss-Prot
Match: LOX5_ORYSJ (Putative lipoxygenase 5 OS=Oryza sativa subsp. japonica GN=Os04g0447100 PE=3 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 2.265e-23
Identity = 49/86 (56.98%), Postives = 65/86 (75.58%), Query Frame = 1
Query:    7 RTIFFLTPAGTLTPIAIELTRPPM-NGKPQWKQVFLPSSKSTECWLWKLAKAHVLAHDAGYHQLVSHWLRNHCCTETYLISTNRQL 261
            R +FFLT AGTL PIAIEL  PPM +G  + K+VF P + +T  WLW+LAKAHV ++DAG HQL++HWLR H C E ++I+ +RQ+
Sbjct:  493 RAVFFLTAAGTLKPIAIELCLPPMTDGCKRAKRVFTPPADATSNWLWQLAKAHVCSNDAGVHQLINHWLRTHACMEPFIIAAHRQM 578          
BLAST of FC921969 vs. ExPASy Swiss-Prot
Match: LOX3_ARATH (Lipoxygenase 3, chloroplastic OS=Arabidopsis thaliana GN=LOX3 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 1.468e-22
Identity = 47/85 (55.29%), Postives = 62/85 (72.94%), Query Frame = 1
Query:    7 RTIFFLTPAGTLTPIAIELTRPPMNGKPQWKQVFLPSSKSTECWLWKLAKAHVLAHDAGYHQLVSHWLRNHCCTETYLISTNRQL 261
            RTIFFLT  GTL P+AIEL+ PP   K + K+V  P   +T  W+W+LAKAHV ++DAG HQLV+HWLR H C E ++++ +RQL
Sbjct:  513 RTIFFLTRLGTLKPVAIELSLPPHGPKHRSKRVLTPPVDATSNWMWQLAKAHVSSNDAGVHQLVNHWLRTHACLEPFILAAHRQL 597          
BLAST of FC921969 vs. ExPASy Swiss-Prot
Match: LOX6_ORYSJ (Probable lipoxygenase 6 OS=Oryza sativa subsp. japonica GN=Os03g0179900 PE=2 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 6.169e-21
Identity = 47/86 (54.65%), Postives = 61/86 (70.93%), Query Frame = 1
Query:    7 RTIFFLTPAGTLTPIAIELTRPPMN-GKPQWKQVFLPSSKSTECWLWKLAKAHVLAHDAGYHQLVSHWLRNHCCTETYLISTNRQL 261
            RTIFFLT AGTL PIAIEL+ PP   G+P+  +V  P   +T  WLW LAKAHV ++DAG HQLV+HWLR H   E ++++ +R +
Sbjct:  507 RTIFFLTEAGTLKPIAIELSLPPAKPGEPRPSKVLTPPYDATSNWLWMLAKAHVSSNDAGVHQLVNHWLRTHATMEPFILAAHRHM 592          
BLAST of FC921969 vs. ExPASy Swiss-Prot
Match: LOX4_SOYBN (Lipoxygenase-4 OS=Glycine max GN=LOX1.5 PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.820e-20
Identity = 44/87 (50.57%), Postives = 63/87 (72.41%), Query Frame = 1
Query:    7 RTIFFLTPAGTLTPIAIELTRPPMNGKPQW--KQVFLPSSKSTECWLWKLAKAHVLAHDAGYHQLVSHWLRNHCCTETYLISTNRQL 261
            RTIFFL   GTLTP+AIEL++P   G+      +V++P+S+  E ++W LAKA+V+ +DA YHQ++SHWL  H   E ++I+TNRQL
Sbjct:  446 RTIFFLKDDGTLTPLAIELSKPHPQGEEYGPVSEVYVPASEGVEAYIWLLAKAYVVVNDACYHQIISHWLSTHAIVEPFVIATNRQL 532          
The following BLAST results are available for this feature:
BLAST of FC921969 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
LOX23_HORVU5.035e-3169.41Lipoxygenase 2.3, chloroplastic OS=Hordeum vulgare... [more]
LOX2_ARATH8.588e-3165.88Lipoxygenase 2, chloroplastic OS=Arabidopsis thali... [more]
LOX21_HORVU3.608e-2967.82Lipoxygenase 2.1, chloroplastic OS=Hordeum vulgare... [more]
LOXC2_ORYSJ4.712e-2963.53Probable lipoxygenase 8, chloroplastic OS=Oryza sa... [more]
LOXC1_ORYSJ1.371e-2862.35Lipoxygenase 7, chloroplastic OS=Oryza sativa subs... [more]
LOX22_HORVU5.760e-2762.92Lipoxygenase 2.2, chloroplastic OS=Hordeum vulgare... [more]
LOX5_ORYSJ2.265e-2356.98Putative lipoxygenase 5 OS=Oryza sativa subsp. jap... [more]
LOX3_ARATH1.468e-2255.29Lipoxygenase 3, chloroplastic OS=Arabidopsis thali... [more]
LOX6_ORYSJ6.169e-2154.65Probable lipoxygenase 6 OS=Oryza sativa subsp. jap... [more]
LOX4_SOYBN6.820e-2050.57Lipoxygenase-4 OS=Glycine max GN=LOX1.5 PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC06056A11T7 RindPdigS Citrus sinensis cDNA clone C06056A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921969 ID=FC921969; Name=FC921969; organism=Citrus sinensis; type=EST; length=266bp
CGCGGGCGCACAATTTTCTTCCTAACACCAGCCGGCACATTGACACCAAT
AGCTATTGAGCTCACTCGGCCTCCAATGAATGGCAAGCCACAATGGAAAC
AAGTGTTTTTACCTTCCTCAAAATCTACTGAGTGCTGGCTTTGGAAGCTA
GCCAAAGCTCATGTCCTTGCTCATGATGCTGGCTATCACCAGCTTGTCAG
CCATTGGTTAAGAAATCATTGTTGCACAGAAACTTACTTAATATCAACCA
ATCGGCAACTCATCGT
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