CX047404

Overview
NameCX047404
Unique NameCX047404
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length776
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4114 contig Csv1_Contig4114:649..1424. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX047404 vs. ExPASy Swiss-Prot
Match: CYSP_PEA (Cysteine proteinase 15A OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 241.121 bits (614), Expect = 5.044e-63
Identity = 114/220 (51.82%), Postives = 155/220 (70.45%), Query Frame = 3
Query:  108 IRQVTDNPGHLLLGSATENNFKIFMQKYEKSYATREDYVHRLGIFAKNMIRAAEHQLLDPTAVHGVTPFSDLSEEEFESMYTGMKGGPPEMDGGGLESSSVKMMEIDGLPENFDWRDKGAVTEVKMQGACGSCWAFSTTGAVEGANFIATGNLLSLSEQQLVDCDHSCDIKEKGTCDNGCSGGLMTNAYKYLIAAGGLEEESSYPYIGKRGKCQFDSEKI 767
            IRQV DN    LL +  E++F  F  K+ KSYAT+E++ +R G+F  N+I+A  HQ  DPTA HG+T FSDL+  EF   + G+K    +       +    ++    LPE+FDWR+KGAVT VK QG+CGSCWAFSTTGA+EGA+++ATG L+SLSEQQLVDCDH CD ++ G+CD+GC+GGLM NA++YL+ +GG+ +E  Y Y G+ G C+FD  K+
Sbjct:   30 IRQVVDNEEDHLLNA--EHHFTSFKSKFSKSYATKEEHDYRFGVFKSNLIKAKLHQNRDPTAEHGITKFSDLTASEFRRQFLGLK----KRLRLPAHAQKAPILPTTNLPEDFDWREKGAVTPVKDQGSCGSCWAFSTTGALEGAHYLATGKLVSLSEQQLVDCDHVCDPEQAGSCDSGCNGGLMNNAFEYLLESGGVVQEKDYAYTGRDGSCKFDKSKV 243          
BLAST of CX047404 vs. ExPASy Swiss-Prot
Match: CYSP1_MAIZE (Cysteine proteinase 1 OS=Zea mays GN=CCP1 PE=2 SV=1)

HSP 1 Score: 234.572 bits (597), Expect = 4.721e-61
Identity = 114/225 (50.67%), Postives = 148/225 (65.78%), Query Frame = 3
Query:   96 QNPTIRQVTDNPGHLLLGSATENNFKIFMQKYEKSYATREDYVHRLGIFAKNMIRAAEHQLLDPTAVHGVTPFSDLSEEEFESMYTGM-KGGPPEMDGGGLESSSVKMMEIDGLPENFDWRDKGAVTEVKMQGACGSCWAFSTTGAVEGANFIATGNLLSLSEQQLVDCDHSCDIKEKGTCDNGCSGGLMTNAYKYLIAAGGLEEESSYPYIGKRGKCQFDSEKI 767
            ++P IRQV        L    E++F  F+Q++ KSY   +++ +RL +F  N+ RA  HQLLDP+A HGVT FSDL+  EF   Y G+ K     +   G  +    ++  DGLP++FDWRD GAV  VK QG+CGSCW+FS +GA+EGA+++ATG L  LSEQQ VDCDH CD  E  +CD+GC+GGLMT A+ YL  AGGLE E  YPY G  GKC+FD  KI
Sbjct:   24 EDPLIRQVVPGGDDNDLELNAESHFLSFVQRFGKSYKDADEHAYRLSVFKDNLRRARRHQLLDPSAEHGVTKFSDLTPAEFRRTYLGLRKSRRALLRELGESAHEAPVLPTDGLPDDFDWRDHGAVGPVKNQGSCGSCWSFSASGALEGAHYLATGKLEVLSEQQFVDCDHECDSSEPDSCDSGCNGGLMTTAFSYLQKAGGLESEKDYPYTGSDGKCKFDKSKI 248          
BLAST of CX047404 vs. ExPASy Swiss-Prot
Match: A494_ARATH (Probable cysteine proteinase A494 OS=Arabidopsis thaliana GN=At2g21430 PE=2 SV=2)

HSP 1 Score: 233.417 bits (594), Expect = 1.052e-60
Identity = 113/223 (50.67%), Postives = 154/223 (69.06%), Query Frame = 3
Query:  108 IRQVTDNPGHLLLGSATENNFKIFMQKYEKSYATREDYVHRLGIFAKNMIRAAEHQLLDPTAVHGVTPFSDLSEEEFESMYTGMKGG--PPEMDGGGLESSSVKMMEIDGLPENFDWRDKGAVTEVKMQGACGSCWAFSTTGAVEGANFIATGNLLSLSEQQLVDCDHSCDIKEKGTCDNGCSGGLMTNAYKYLIAAGGLEEESSYPYIG-KRGKCQFDSEKI 767
            IRQV D     +L S  E++F +F +K+ K Y + E++ +R  +F  N++RA  HQ +DP+A HGVT FSDL+  EF   + G+KGG   P+      +++   ++    LPE FDWRD+GAVT VK QG+CGSCW+FSTTGA+EGA+F+ATG L+SLSEQQLVDCDH CD +E+G+CD+GC+GGLM +A++Y +  GGL  E  YPY G   G C+ D  KI
Sbjct:   30 IRQVVDETEPKVLSS--EDHFTLFKKKFGKVYGSIEEHYYRFSVFKANLLRAMRHQKMDPSARHGVTQFSDLTRSEFRRKHLGVKGGFKLPK------DANQAPILPTQNLPEEFDWRDRGAVTPVKNQGSCGSCWSFSTTGALEGAHFLATGKLVSLSEQQLVDCDHECDPEEEGSCDSGCNGGLMNSAFEYTLKTGGLMREKDYPYTGTDGGSCKLDRSKI 244          
BLAST of CX047404 vs. ExPASy Swiss-Prot
Match: RD19A_ARATH (Cysteine proteinase RD19a OS=Arabidopsis thaliana GN=RD19A PE=2 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 6.817e-60
Identity = 113/223 (50.67%), Postives = 153/223 (68.61%), Query Frame = 3
Query:  108 IRQVTDNPGHLLLGSATENNFKIFMQKYEKSYATREDYVHRLGIFAKNMIRAAEHQLLDPTAVHGVTPFSDLSEEEFESMYTGMKGG--PPEMDGGGLESSSVKMMEIDGLPENFDWRDKGAVTEVKMQGACGSCWAFSTTGAVEGANFIATGNLLSLSEQQLVDCDHSCDIKEKGTCDNGCSGGLMTNAYKYLIAAGGLEEESSYPYIGKRGK-CQFDSEKI 767
            IRQV       +L S  E++F +F +K+ K YA+ E++ +R  +F  N+ RA  HQ LDP+A HGVT FSDL+  EF   + G++ G   P+      +++   ++  + LPE+FDWRD GAVT VK QG+CGSCW+FS TGA+EGANF+ATG L+SLSEQQLVDCDH CD +E  +CD+GC+GGLM +A++Y +  GGL +E  YPY GK GK C+ D  KI
Sbjct:   33 IRQVVGGAEPQVLTS--EDHFSLFKRKFGKVYASNEEHDYRFSVFKANLRRARRHQKLDPSATHGVTQFSDLTRSEFRKKHLGVRSGFKLPK------DANKAPILPTENLPEDFDWRDHGAVTPVKNQGSCGSCWSFSATGALEGANFLATGKLVSLSEQQLVDCDHECDPEEADSCDSGCNGGLMNSAFEYTLKTGGLMKEEDYPYTGKDGKTCKLDKSKI 247          
BLAST of CX047404 vs. ExPASy Swiss-Prot
Match: CATL_SCHMA (Cathepsin L OS=Schistosoma mansoni GN=CL1 PE=2 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 5.426e-41
Identity = 97/215 (45.12%), Postives = 127/215 (59.07%), Query Frame = 3
Query:  132 GHLLLGSATENNFKIFMQKYEKSYATREDYVHRLGIFAKNMIRAAEHQL-LDPTAVHGVTPFSDLSEEEFESMYTGMKGGPPEMDGGGLESSSVKMMEIDGLPENFDWRDKGAVTEVKMQGACGSCWAFSTTGAVEGANFIATGNLLSLSEQQLVDCDHSCDIKEKGTCDNGCSGGLMTNAYKYLIAAGGLEEESSYPYIGKRGKCQFDSEKIAV 773
            G  L G+  E   + F  KY K Y   ED + R  IF  N+++A  +Q+ +  +A++GVTP+SDL+ +EF   +       P        S      E++ +P+NFDWR+KGAVTEVK QG CGSCWAFSTTG VE   F  TG LLSLSEQQLVDCD           D+GC+GGL +NAY+ +I  GGL  E +YPY  K  KC   ++ +AV
Sbjct:    9 GFKLPGNVDEKYVQ-FKLKYRKQYHETEDEI-RFNIFKSNILKAQLYQVFVRGSAIYGVTPYSDLTTDEFARTHLTASWVVPSSRSNTPTSLG---KEVNNIPKNFDWREKGAVTEVKNQGMCGSCWAFSTTGNVESQWFRKTGKLLSLSEQQLVDCD---------GLDDGCNGGLPSNAYESIIKMGGLMLEDNYPYDAKNEKCHLKTDGVAV 209          
BLAST of CX047404 vs. ExPASy Swiss-Prot
Match: CATF_MOUSE (Cathepsin F OS=Mus musculus GN=Ctsf PE=2 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 9.256e-41
Identity = 97/203 (47.78%), Postives = 119/203 (58.62%), Query Frame = 3
Query:  168 FKIFMQKYEKSYATREDYVHRLGIFAKNMIRAAEHQLLDP-TAVHGVTPFSDLSEEEFESMYTGMKGGPPEMDGGGLESSSVKMMEIDGLPENFDWRDKGAVTEVKMQGACGSCWAFSTTGAVEGANFIATGNLLSLSEQQLVDCDHSCDIKEKGTCDNGCSGGLMTNAYKYLIAAGGLEEESSYPYIGKRGKCQFDSEKIAV 773
            FK FM  Y ++Y +RE+   RL +FA+NMIRA + Q LD  TA +G+T FSDL+EEEF ++Y      P      G + S  K +  D  P  +DWR KGAVTEVK QG CGSCWAFS TG VEG  F+  G LLSLSEQ+L+DCD           D  C GGL +NAY  +   GGLE E  Y Y G    C F ++   V
Sbjct:  165 FKDFMTTYNRTYESREEAQWRLTVFARNMIRAQKIQALDRGTAQYGITKFSDLTEEEFHTIYLN----PLLQKESGRKMSPAKSIN-DLAPPEWDWRKKGAVTEVKNQGMCGSCWAFSVTGNVEGQWFLNRGTLLSLSEQELLDCD---------KVDKACLGGLPSNAYAAIKNLGGLETEDDYGYQGHVQTCNFSAQMAKV 353          
BLAST of CX047404 vs. ExPASy Swiss-Prot
Match: CYSP1_DICDI (Cysteine proteinase 1 OS=Dictyostelium discoideum GN=cprA PE=1 SV=2)

HSP 1 Score: 166.777 bits (421), Expect = 1.209e-40
Identity = 91/212 (42.92%), Postives = 124/212 (58.49%), Query Frame = 3
Query:  159 ENNFKIFMQKYEKSYATREDYVHRLGIFAKNMIRAAEHQLL----DPTAVHGVTPFSDLSEEEFESMYTGMKGGPPEMDGGGLESSSVKMMEIDGLPENFDWRDKGAVTEVKMQGACGSCWAFSTTGAVEGANFIATGNLLSLSEQQLVDCDHSC-DIKEKGTCDNGCSGGLMTNAYKYLIAAGGLEEESSYPYIGKRG-KCQFDSEKIAVR 776
            ++ F  F  K+ K Y+  E+Y+ R  IF  N+ +  E  L+          GV  F+DLS +EF++ Y   K      D    +    +   I+ +P  FDWR +GAVT VK QG CGSCW+FSTTG VEG +FI+   L+SLSEQ LVDCDH C + + +  CD GC+GGL  NAY Y+I  GG++ ESSYPY  + G +C F+S  I  +
Sbjct:   26 QSQFLEFQDKFNKKYS-HEEYLERFEIFKSNLGKIEELNLIAINHKADTKFGVNKFADLSSDEFKNYYLNNKEAIFTDDLPVADYLDDEF--INSIPTAFDWRTRGAVTPVKNQGQCGSCWSFSTTGNVEGQHFISQNKLVSLSEQNLVDCDHECMEYEGEQACDEGCNGGLQPNAYNYIIKNGGIQTESSYPYTAETGTQCNFNSANIGAK 234          
BLAST of CX047404 vs. ExPASy Swiss-Prot
Match: XCP1_ARATH (Xylem cysteine proteinase 1 OS=Arabidopsis thaliana GN=XCP1 PE=1 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.579e-40
Identity = 87/213 (40.85%), Postives = 125/213 (58.69%), Query Frame = 3
Query:  129 PGHLLLGSATENNFKIFMQKYEKSYATREDYVHRLGIFAKNMIRAAEHQLLDPTAVHGVTPFSDLSEEEFESMYTGMKGGPPEMDGGGLESSSVKMMEIDGLPENFDWRDKGAVTEVKMQGACGSCWAFSTTGAVEGANFIATGNLLSLSEQQLVDCDHSCDIKEKGTCDNGCSGGLMTNAYKYLIAAGGLEEESSYPYIGKRGKCQFDSEKI 767
            P HL         F+ +M ++ K+Y + E+ VHR  +F +N++   +      +   G+  F+DL+ EEF+  Y G+    P+       S++ +  +I  LP++ DWR KGAV  VK QG CGSCWAFST  AVEG N I TGNL SLSEQ+L+DCD         T ++GC+GGLM  A++Y+I+ GGL +E  YPY+ + G CQ   E +
Sbjct:   38 PEHLTNTDKLLELFESWMSEHSKAYKSVEEKVHRFEVFRENLMHIDQRNNEINSYWLGLNEFADLTHEEFKGRYLGL--AKPQFSRKRQPSANFRYRDITDLPKSVDWRKKGAVAPVKDQGQCGSCWAFSTVAAVEGINQITTGNLSSLSEQELIDCD--------TTFNSGCNGGLMDYAFQYIISTGGLHKEDDYPYLMEEGICQEQKEDV 240          
BLAST of CX047404 vs. ExPASy Swiss-Prot
Match: CATF_HUMAN (Cathepsin F OS=Homo sapiens GN=CTSF PE=1 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.977e-39
Identity = 95/205 (46.34%), Postives = 120/205 (58.54%), Query Frame = 3
Query:  168 FKIFMQKYEKSYATREDYVHRLGIFAKNMIRAAEHQLLDP-TAVHGVTPFSDLSEEEFESMY--TGMKGGPPEMDGGGLESSSVKMMEIDGLPENFDWRDKGAVTEVKMQGACGSCWAFSTTGAVEGANFIATGNLLSLSEQQLVDCDHSCDIKEKGTCDNGCSGGLMTNAYKYLIAAGGLEEESSYPYIGKRGKCQFDSEKIAV 773
            FK F+  Y ++Y ++E+   RL +F  NM+RA + Q LD  TA +GVT FSDL+EEEF ++Y  T ++  P      G +    K +  D  P  +DWR KGAVT+VK QG CGSCWAFS TG VEG  F+  G LLSLSEQ+L+DCD           D  C GGL +NAY  +   GGLE E  Y Y G    C F +EK  V
Sbjct:  187 FKNFVITYNRTYESKEEARWRLSVFVNNMVRAQKIQALDRGTAQYGVTKFSDLTEEEFRTIYLNTLLRKEP------GNKMKQAKSVG-DLAPPEWDWRSKGAVTKVKDQGMCGSCWAFSVTGNVEGQWFLNQGTLLSLSEQELLDCD---------KMDKACMGGLPSNAYSAIKNLGGLETEDDYSYQGHMQSCNFSAEKAKV 375          
BLAST of CX047404 vs. ExPASy Swiss-Prot
Match: XCP2_ARATH (Xylem cysteine proteinase 2 OS=Arabidopsis thaliana GN=XCP2 PE=1 SV=2)

HSP 1 Score: 159.844 bits (403), Expect = 1.478e-38
Identity = 82/199 (41.21%), Postives = 117/199 (58.79%), Query Frame = 3
Query:  168 FKIFMQKYEKSYATREDYVHRLGIFAKNMIRAAEHQLLDPTAVHGVTPFSDLSEEEFESMYTGMKGGPPEMDGGGLESSSVKMMEIDGLPENFDWRDKGAVTEVKMQGACGSCWAFSTTGAVEGANFIATGNLLSLSEQQLVDCDHSCDIKEKGTCDNGCSGGLMTNAYKYLIAAGGLEEESSYPYIGKRGKCQFDSEK 764
            F+ ++  +EK+Y T E+   R  +F  N+    E      +   G+  F+DLS EEF+ MY G+K      D      +     +++ +P++ DWR KGAV EVK QG+CGSCWAFST  AVEG N I TGNL +LSEQ+L+DCD         T +NGC+GGLM  A++Y++  GGL +E  YPY  + G C+   ++
Sbjct:   51 FENWISNFEKAYETVEEKFLRFEVFKDNLKHIDETNKKGKSYWLGLNEFADLSHEEFKKMYLGLKTDIVRRDEER-SYAEFAYRDVEAVPKSVDWRKKGAVAEVKNQGSCGSCWAFSTVAAVEGINKIVTGNLTTLSEQELIDCD--------TTYNNGCNGGLMDYAFEYIVKNGGLRKEEDYPYSMEEGTCEMQKDE 240          
The following BLAST results are available for this feature:
BLAST of CX047404 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 153
Match NameE-valueIdentityDescription
CYSP_PEA5.044e-6351.82Cysteine proteinase 15A OS=Pisum sativum PE=2 SV=1[more]
CYSP1_MAIZE4.721e-6150.67Cysteine proteinase 1 OS=Zea mays GN=CCP1 PE=2 SV=... [more]
A494_ARATH1.052e-6050.67Probable cysteine proteinase A494 OS=Arabidopsis t... [more]
RD19A_ARATH6.817e-6050.67Cysteine proteinase RD19a OS=Arabidopsis thaliana ... [more]
CATL_SCHMA5.426e-4145.12Cathepsin L OS=Schistosoma mansoni GN=CL1 PE=2 SV=... [more]
CATF_MOUSE9.256e-4147.78Cathepsin F OS=Mus musculus GN=Ctsf PE=2 SV=1[more]
CYSP1_DICDI1.209e-4042.92Cysteine proteinase 1 OS=Dictyostelium discoideum ... [more]
XCP1_ARATH1.579e-4040.85Xylem cysteine proteinase 1 OS=Arabidopsis thalian... [more]
CATF_HUMAN2.977e-3946.34Cathepsin F OS=Homo sapiens GN=CTSF PE=1 SV=1[more]
XCP2_ARATH1.478e-3841.21Xylem cysteine proteinase 2 OS=Arabidopsis thalian... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_14A03_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-14A03-B5-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047404 ID=CX047404; Name=CX047404; organism=Citrus sinensis; type=EST; length=776bp
AGAAGATGGCAGCAACACAAAGCCCAGCTCTAACATGCGCCATCGGAGTA
ACCCTCTTGACCTACGCACTCACACTCTCTTCAGCTCTAGTTCCACAAAA
CCCGACCATACGCCAAGTCACAGACAATCCCGGTCATCTGCTTCTGGGAT
CTGCCACAGAGAACAACTTCAAGATTTTCATGCAGAAGTACGAGAAAAGC
TATGCTACTAGAGAGGACTACGTGCACCGGCTGGGGATTTTCGCCAAGAA
TATGATCAGGGCCGCTGAGCACCAGCTGCTCGATCCGACGGCTGTGCATG
GGGTCACCCCTTTCTCTGATTTGTCCGAGGAGGAGTTTGAGAGTATGTAC
ACTGGGATGAAAGGTGGGCCCCCTGAGATGGACGGTGGAGGTTTGGAGAG
TAGTAGTGTAAAGATGATGGAGATTGATGGATTGCCTGAGAATTTTGATT
GGAGAGACAAAGGTGCTGTCACTGAGGTCAAGATGCAGGGAGCATGTGGG
TCATGCTGGGCTTTTAGCACTACAGGAGCTGTTGAAGGAGCCAACTTCAT
TGCGACTGGGAATCTTCTGAGTCTTAGCGAGCAGCAGCTTGTAGATTGTG
ATCACTCGTGTGATATAAAGGAGAAGGGTACTTGTGACAATGGTTGTTCT
GGAGGCCTCATGACAAATGCATACAAATATTTGATCGCGGCTGGAGGGCT
AGAAGAGGAGAGTTCATATCCTTATATTGGGAAGCGTGGCAAATGCCAAT
TCGATTCAGAGAAAATAGCCGTTCGA
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