CX047395

Overview
NameCX047395
Unique NameCX047395
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length700
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047395 vs. ExPASy Swiss-Prot
Match: CYB5_TOBAC (Cytochrome b5 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 1.081e-50
Identity = 92/119 (77.31%), Postives = 104/119 (87.39%), Query Frame = -3
Query:  336 HNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDIDSSTVXXXXXXXXXKQPHYNQDKTPEFIIKLLQFLVPLLILGLAVGIRFYTKSA 692
            HN+ KDCWL+I GKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSA+AM+DE+YVGDIDS+T+          QPHYNQDKT EF++KLLQFLVPL+ILG+A GIRFYTK +
Sbjct:   16 HNNAKDCWLVISGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSARAMLDEYYVGDIDSATIPTKTKYTPPNQPHYNQDKTSEFVVKLLQFLVPLIILGVAFGIRFYTKQS 134          
BLAST of CX047395 vs. ExPASy Swiss-Prot
Match: CYB5S_TOBAC (Cytochrome b5, seed isoform OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 1.012e-48
Identity = 90/121 (74.38%), Postives = 104/121 (85.95%), Query Frame = -3
Query:  336 AGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDIDSSTVXXXXXXXXXKQPHYNQDKTPEFIIKLLQFLVPLLILGLAVGIRFYTKSA 698
            + HN+ KDCWLII GKVY+VTKFL+DHPGG EVLLSATGKDATDDFED+GHSSSA+AM+DE+YVGDIDSST+         KQPHYNQDKT EFI+KLLQFLVPL+ILG+A G+ FYTK +
Sbjct:   14 SNHNNAKDCWLIISGKVYNVTKFLEDHPGGGEVLLSATGKDATDDFEDIGHSSSARAMLDEYYVGDIDSSTIPTKVKYTPPKQPHYNQDKTTEFIVKLLQFLVPLIILGVAFGVHFYTKQS 134          
BLAST of CX047395 vs. ExPASy Swiss-Prot
Match: CYB5_ORYSJ (Cytochrome b5 OS=Oryza sativa subsp. japonica GN=Os05g0108800 PE=2 SV=2)

HSP 1 Score: 191.815 bits (486), Expect = 2.945e-48
Identity = 91/120 (75.83%), Postives = 104/120 (86.67%), Query Frame = -3
Query:  339 AGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDIDSSTVXXXXXXXXXKQPHYNQDKTPEFIIKLLQFLVPLLILGLAVGIRFYTKS 698
            A HN + DCWLII GKVY+V+KFL+DHPGGD+VLLS+TGKDATDDFEDVGHS++A+AMMDE+YVGDID+ST+         KQPHYNQDKTPEFIIK+LQFLVPL ILGLAV IR YTKS
Sbjct:   15 AKHNSKDDCWLIIGGKVYNVSKFLEDHPGGDDVLLSSTGKDATDDFEDVGHSTTARAMMDEYYVGDIDTSTIPARTKYVPPKQPHYNQDKTPEFIIKILQFLVPLAILGLAVAIRIYTKS 134          
BLAST of CX047395 vs. ExPASy Swiss-Prot
Match: CYB5_BOROF (Cytochrome b5 OS=Borago officinalis PE=2 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 6.560e-48
Identity = 92/121 (76.03%), Postives = 104/121 (85.95%), Query Frame = -3
Query:  336 AGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDIDSSTVXXXXXXXXXKQPHYNQDKTPEFIIKLLQFLVPLLILGLAVGIRFYTKSA 698
            A HN+ KDCWLII GKVYDVTKFL+DHPGGD+VLLSATGKDATDDFED+GHSSSAKAM+DE+YVGDIDSS++         KQP YN DKT EF+IKLLQFLVPL+IL  A+GIRFYTKS+
Sbjct:   11 AQHNNSKDCWLIINGKVYDVTKFLEDHPGGDDVLLSATGKDATDDFEDIGHSSSAKAMLDEYYVGDIDSSSIPSQVKYTPPKQPLYNPDKTREFVIKLLQFLVPLVILAGAIGIRFYTKSS 131          
BLAST of CX047395 vs. ExPASy Swiss-Prot
Match: CYB52_ARATH (Probable cytochrome b5 isoform 2 OS=Arabidopsis thaliana GN=At2g32720 PE=1 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 8.019e-46
Identity = 86/118 (72.88%), Postives = 99/118 (83.90%), Query Frame = -3
Query:  339 HNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDIDSSTVXXXXXXXXXKQPHYNQDKTPEFIIKLLQFLVPLLILGLAVGIRFYTKS 692
            HN   DCW++I GKVY+VTKFL+DHPGGD+VLLS+TGKDATDDFEDVGHS SA+ MM+++YVG+ID +T+         KQPHYNQDKT EFIIKLLQFLVPL ILGLAVGIR YTKS
Sbjct:   16 HNQAHDCWIVINGKVYNVTKFLEDHPGGDDVLLSSTGKDATDDFEDVGHSESAREMMEQYYVGEIDPTTIPKKVKYTPPKQPHYNQDKTSEFIIKLLQFLVPLAILGLAVGIRIYTKS 133          
BLAST of CX047395 vs. ExPASy Swiss-Prot
Match: CYB5_CUSRE (Cytochrome b5 OS=Cuscuta reflexa PE=2 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 2.333e-45
Identity = 88/119 (73.95%), Postives = 99/119 (83.19%), Query Frame = -3
Query:  336 HNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDIDSSTVXXXXXXXXXKQPHYNQDKTPEFIIKLLQFLVPLLILGLAVGIRFYTKSA 692
            H+   DCWL+I GKVYDVTKFLDDHPGG +VLLS+T KDATDDFED+GHSSSA+AMMDE  VGDIDSST+         KQP YNQDKTP+FIIKLLQFLVPL+ILG+AVGIRFY K +
Sbjct:   15 HSQPNDCWLVIGGKVYDVTKFLDDHPGGADVLLSSTAKDATDDFEDIGHSSSARAMMDEMCVGDIDSSTIPTKTSYTPPKQPLYNQDKTPQFIIKLLQFLVPLIILGVAVGIRFYKKQS 133          
BLAST of CX047395 vs. ExPASy Swiss-Prot
Match: CYB51_ARATH (Cytochrome b5 isoform 1 OS=Arabidopsis thaliana GN=At5g53560 PE=2 SV=2)

HSP 1 Score: 178.718 bits (452), Expect = 2.580e-44
Identity = 83/117 (70.94%), Postives = 99/117 (84.62%), Query Frame = -3
Query:  342 HNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDIDSSTVXXXXXXXXXKQPHYNQDKTPEFIIKLLQFLVPLLILGLAVGIRFYTK 692
            HN  KDCWLII GKVYDVT F+DDHPGGDEVLLS+TGKDAT+DFEDVGHS +A+ MMD++++G+IDSS+V         +QP YNQDKTPEFIIK+LQFLVP+LILGLA+ +R YTK
Sbjct:   16 HNKTKDCWLIISGKVYDVTPFMDDHPGGDEVLLSSTGKDATNDFEDVGHSDTARDMMDKYFIGEIDSSSVPATRTYVAPQQPAYNQDKTPEFIIKILQFLVPILILGLALVVRHYTK 132          
BLAST of CX047395 vs. ExPASy Swiss-Prot
Match: CYB5_BRAOB (Cytochrome b5 OS=Brassica oleracea var. botrytis GN=CYB5 PE=1 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 3.369e-44
Identity = 83/117 (70.94%), Postives = 98/117 (83.76%), Query Frame = -3
Query:  342 HNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDIDSSTVXXXXXXXXXKQPHYNQDKTPEFIIKLLQFLVPLLILGLAVGIRFYTK 692
            HN  KDCWLII GKVYDVT F+DDHPGGDEVLLS+TGKDAT+DFEDVGHS +A+ MM+++Y+G+IDSSTV          QP YNQDKTPEF+IK+LQFLVP+LILGLA+ +R YTK
Sbjct:   16 HNKTKDCWLIISGKVYDVTPFMDDHPGGDEVLLSSTGKDATNDFEDVGHSDTARDMMEKYYIGEIDSSTVPATRTYVAPVQPAYNQDKTPEFMIKILQFLVPILILGLALVVRQYTK 132          
BLAST of CX047395 vs. ExPASy Swiss-Prot
Match: CYB5B_PONAB (Cytochrome b5 type B OS=Pongo abelii GN=CYB5B PE=2 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 8.357e-19
Identity = 40/70 (57.14%), Postives = 54/70 (77.14%), Query Frame = -3
Query:  489 AGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDIDSS 698
            A  N  K+ WL+I G+VYDVT+FL++HPGG+EVLL   G DA++ FEDVGHSS A+ M+ ++Y+GDI  S
Sbjct:   29 AKRNSLKELWLVIHGRVYDVTRFLNEHPGGEEVLLEQAGVDASESFEDVGHSSDAREMLKQYYIGDIHPS 98          
BLAST of CX047395 vs. ExPASy Swiss-Prot
Match: CYB5B_HUMAN (Cytochrome b5 type B OS=Homo sapiens GN=CYB5B PE=1 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 8.357e-19
Identity = 40/70 (57.14%), Postives = 54/70 (77.14%), Query Frame = -3
Query:  489 AGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDIDSS 698
            A  N  K+ WL+I G+VYDVT+FL++HPGG+EVLL   G DA++ FEDVGHSS A+ M+ ++Y+GDI  S
Sbjct:   29 AKRNSLKELWLVIHGRVYDVTRFLNEHPGGEEVLLEQAGVDASESFEDVGHSSDAREMLKQYYIGDIHPS 98          
The following BLAST results are available for this feature:
BLAST of CX047395 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
CYB5_TOBAC1.081e-5077.31Cytochrome b5 OS=Nicotiana tabacum PE=2 SV=1[more]
CYB5S_TOBAC1.012e-4874.38Cytochrome b5, seed isoform OS=Nicotiana tabacum P... [more]
CYB5_ORYSJ2.945e-4875.83Cytochrome b5 OS=Oryza sativa subsp. japonica GN=O... [more]
CYB5_BOROF6.560e-4876.03Cytochrome b5 OS=Borago officinalis PE=2 SV=1[more]
CYB52_ARATH8.019e-4672.88Probable cytochrome b5 isoform 2 OS=Arabidopsis th... [more]
CYB5_CUSRE2.333e-4573.95Cytochrome b5 OS=Cuscuta reflexa PE=2 SV=1[more]
CYB51_ARATH2.580e-4470.94Cytochrome b5 isoform 1 OS=Arabidopsis thaliana GN... [more]
CYB5_BRAOB3.369e-4470.94Cytochrome b5 OS=Brassica oleracea var. botrytis G... [more]
CYB5B_PONAB8.357e-1957.14Cytochrome b5 type B OS=Pongo abelii GN=CYB5B PE=2... [more]
CYB5B_HUMAN8.357e-1957.14Cytochrome b5 type B OS=Homo sapiens GN=CYB5B PE=1... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_13H08_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-13H08-O16-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047395 ID=CX047395; Name=CX047395; organism=Citrus sinensis; type=EST; length=700bp
CTTGCACTTAATTAAGGAAATTTAAATAATGTAGGAGAAAGGAAGCCCAA
AGGCCATTTGGACAATTGGTGCTTTCCTTCCTTTCTTTTAGATGAAGATG
CATACGAATAAAAATGAAAGCAAAGCCAAAACGAGGAACTGCAAATTGAT
CATTGCATTCCAAGTCATGCGGGCAGTGAATGGTCACTTATCAAACACAA
GCACATGCCATCACAAAAGATAAAGAACCCTACATTTTCTGGTGATAATA
GTTCCAAACAACTAGTAAAAACAAGGTGCAATGCAACGGATATAGATTTA
TTGTAAATGTATTTTTATCTTGCAAGGTATCATTAAGCGGATTTGGTATA
GAAGCGGATGCCAACAGCCAATCCTAAGATTAGCAGAGGAACTAGGAACT
GGAGGAGCTTTATAATAAACTCGGGTGTCTTGTCTTGGTTGTAGTGAGGC
TGCTTGGGAGGGGTGTACTTGGTCTTGGTGGGAACGGTTGATGAATCAAT
GTCACCCACATAGAATTCATCCATCATCGCTTTTGCACTGCTACTGTGAC
CAACATCCTCAAAGTCATCAGTCGCATCCTTTCCTGTGGCAGACAACAAT
ACCTCGTCTCCACCAGGATGGTCATCCAAGAATTTTGTCACATCATATAC
CTTGCCCTCAATGATAAGCCAACAGTCCTTGCGGTCGTTGTGCCCAGCCT
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