CX047394

Overview
NameCX047394
Unique NameCX047394
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length696
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047394 vs. ExPASy Swiss-Prot
Match: CYB5_TOBAC (Cytochrome b5 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 1.072e-50
Identity = 92/119 (77.31%), Postives = 104/119 (87.39%), Query Frame = 3
Query:    6 HNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDIDSSTVXXXXXXXXXXQPHYNQDKTPEFIIKLLQFLVPLLILGLAVGIRFYTKSA 362
            HN+ KDCWL+I GKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSA+AM+DE+YVGDIDS+T+          QPHYNQDKT EF++KLLQFLVPL+ILG+A GIRFYTK +
Sbjct:   16 HNNAKDCWLVISGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSARAMLDEYYVGDIDSATIPTKTKYTPPNQPHYNQDKTSEFVVKLLQFLVPLIILGVAFGIRFYTKQS 134          
BLAST of CX047394 vs. ExPASy Swiss-Prot
Match: CYB5S_TOBAC (Cytochrome b5, seed isoform OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.311e-48
Identity = 89/119 (74.79%), Postives = 102/119 (85.71%), Query Frame = 3
Query:    6 HNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDIDSSTVXXXXXXXXXXQPHYNQDKTPEFIIKLLQFLVPLLILGLAVGIRFYTKSA 362
            HN+ KDCWLII GKVY+VTKFL+DHPGG EVLLSATGKDATDDFED+GHSSSA+AM+DE+YVGDIDSST+          QPHYNQDKT EFI+KLLQFLVPL+ILG+A G+ FYTK +
Sbjct:   16 HNNAKDCWLIISGKVYNVTKFLEDHPGGGEVLLSATGKDATDDFEDIGHSSSARAMLDEYYVGDIDSSTIPTKVKYTPPKQPHYNQDKTTEFIVKLLQFLVPLIILGVAFGVHFYTKQS 134          
BLAST of CX047394 vs. ExPASy Swiss-Prot
Match: CYB5_ORYSJ (Cytochrome b5 OS=Oryza sativa subsp. japonica GN=Os05g0108800 PE=2 SV=2)

HSP 1 Score: 191.045 bits (484), Expect = 4.981e-48
Identity = 89/118 (75.42%), Postives = 102/118 (86.44%), Query Frame = 3
Query:    6 HNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDIDSSTVXXXXXXXXXXQPHYNQDKTPEFIIKLLQFLVPLLILGLAVGIRFYTKS 359
            HN + DCWLII GKVY+V+KFL+DHPGGD+VLLS+TGKDATDDFEDVGHS++A+AMMDE+YVGDID+ST+          QPHYNQDKTPEFIIK+LQFLVPL ILGLAV IR YTKS
Sbjct:   17 HNSKDDCWLIIGGKVYNVSKFLEDHPGGDDVLLSSTGKDATDDFEDVGHSTTARAMMDEYYVGDIDTSTIPARTKYVPPKQPHYNQDKTPEFIIKILQFLVPLAILGLAVAIRIYTKS 134          
BLAST of CX047394 vs. ExPASy Swiss-Prot
Match: CYB5_BOROF (Cytochrome b5 OS=Borago officinalis PE=2 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.110e-47
Identity = 90/119 (75.63%), Postives = 102/119 (85.71%), Query Frame = 3
Query:    6 HNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDIDSSTVXXXXXXXXXXQPHYNQDKTPEFIIKLLQFLVPLLILGLAVGIRFYTKSA 362
            HN+ KDCWLII GKVYDVTKFL+DHPGGD+VLLSATGKDATDDFED+GHSSSAKAM+DE+YVGDIDSS++          QP YN DKT EF+IKLLQFLVPL+IL  A+GIRFYTKS+
Sbjct:   13 HNNSKDCWLIINGKVYDVTKFLEDHPGGDDVLLSATGKDATDDFEDIGHSSSAKAMLDEYYVGDIDSSSIPSQVKYTPPKQPLYNPDKTREFVIKLLQFLVPLVILAGAIGIRFYTKSS 131          
BLAST of CX047394 vs. ExPASy Swiss-Prot
Match: CYB52_ARATH (Probable cytochrome b5 isoform 2 OS=Arabidopsis thaliana GN=At2g32720 PE=1 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 7.952e-46
Identity = 85/118 (72.03%), Postives = 98/118 (83.05%), Query Frame = 3
Query:    6 HNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDIDSSTVXXXXXXXXXXQPHYNQDKTPEFIIKLLQFLVPLLILGLAVGIRFYTKS 359
            HN   DCW++I GKVY+VTKFL+DHPGGD+VLLS+TGKDATDDFEDVGHS SA+ MM+++YVG+ID +T+          QPHYNQDKT EFIIKLLQFLVPL ILGLAVGIR YTKS
Sbjct:   16 HNQAHDCWIVINGKVYNVTKFLEDHPGGDDVLLSSTGKDATDDFEDVGHSESAREMMEQYYVGEIDPTTIPKKVKYTPPKQPHYNQDKTSEFIIKLLQFLVPLAILGLAVGIRIYTKS 133          
BLAST of CX047394 vs. ExPASy Swiss-Prot
Match: CYB5_CUSRE (Cytochrome b5 OS=Cuscuta reflexa PE=2 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 2.314e-45
Identity = 87/119 (73.11%), Postives = 98/119 (82.35%), Query Frame = 3
Query:    6 HNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDIDSSTVXXXXXXXXXXQPHYNQDKTPEFIIKLLQFLVPLLILGLAVGIRFYTKSA 362
            H+   DCWL+I GKVYDVTKFLDDHPGG +VLLS+T KDATDDFED+GHSSSA+AMMDE  VGDIDSST+          QP YNQDKTP+FIIKLLQFLVPL+ILG+AVGIRFY K +
Sbjct:   15 HSQPNDCWLVIGGKVYDVTKFLDDHPGGADVLLSSTAKDATDDFEDIGHSSSARAMMDEMCVGDIDSSTIPTKTSYTPPKQPLYNQDKTPQFIIKLLQFLVPLIILGVAVGIRFYKKQS 133          
BLAST of CX047394 vs. ExPASy Swiss-Prot
Match: CYB51_ARATH (Cytochrome b5 isoform 1 OS=Arabidopsis thaliana GN=At5g53560 PE=2 SV=2)

HSP 1 Score: 178.718 bits (452), Expect = 2.558e-44
Identity = 83/117 (70.94%), Postives = 98/117 (83.76%), Query Frame = 3
Query:    6 HNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDIDSSTVXXXXXXXXXXQPHYNQDKTPEFIIKLLQFLVPLLILGLAVGIRFYTK 356
            HN  KDCWLII GKVYDVT F+DDHPGGDEVLLS+TGKDAT+DFEDVGHS +A+ MMD++++G+IDSS+V          QP YNQDKTPEFIIK+LQFLVP+LILGLA+ +R YTK
Sbjct:   16 HNKTKDCWLIISGKVYDVTPFMDDHPGGDEVLLSSTGKDATNDFEDVGHSDTARDMMDKYFIGEIDSSSVPATRTYVAPQQPAYNQDKTPEFIIKILQFLVPILILGLALVVRHYTK 132          
BLAST of CX047394 vs. ExPASy Swiss-Prot
Match: CYB5_BRAOB (Cytochrome b5 OS=Brassica oleracea var. botrytis GN=CYB5 PE=1 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 3.341e-44
Identity = 83/117 (70.94%), Postives = 98/117 (83.76%), Query Frame = 3
Query:    6 HNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDIDSSTVXXXXXXXXXXQPHYNQDKTPEFIIKLLQFLVPLLILGLAVGIRFYTK 356
            HN  KDCWLII GKVYDVT F+DDHPGGDEVLLS+TGKDAT+DFEDVGHS +A+ MM+++Y+G+IDSSTV          QP YNQDKTPEF+IK+LQFLVP+LILGLA+ +R YTK
Sbjct:   16 HNKTKDCWLIISGKVYDVTPFMDDHPGGDEVLLSSTGKDATNDFEDVGHSDTARDMMEKYYIGEIDSSTVPATRTYVAPVQPAYNQDKTPEFMIKILQFLVPILILGLALVVRQYTK 132          
BLAST of CX047394 vs. ExPASy Swiss-Prot
Match: CYB5B_PONAB (Cytochrome b5 type B OS=Pongo abelii GN=CYB5B PE=2 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 1.413e-18
Identity = 39/67 (58.21%), Postives = 53/67 (79.10%), Query Frame = 3
Query:    9 NDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDIDSS 209
            N  K+ WL+I G+VYDVT+FL++HPGG+EVLL   G DA++ FEDVGHSS A+ M+ ++Y+GDI  S
Sbjct:   32 NSLKELWLVIHGRVYDVTRFLNEHPGGEEVLLEQAGVDASESFEDVGHSSDAREMLKQYYIGDIHPS 98          
BLAST of CX047394 vs. ExPASy Swiss-Prot
Match: CYB5B_HUMAN (Cytochrome b5 type B OS=Homo sapiens GN=CYB5B PE=1 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 1.413e-18
Identity = 39/67 (58.21%), Postives = 53/67 (79.10%), Query Frame = 3
Query:    9 NDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDIDSS 209
            N  K+ WL+I G+VYDVT+FL++HPGG+EVLL   G DA++ FEDVGHSS A+ M+ ++Y+GDI  S
Sbjct:   32 NSLKELWLVIHGRVYDVTRFLNEHPGGEEVLLEQAGVDASESFEDVGHSSDAREMLKQYYIGDIHPS 98          
The following BLAST results are available for this feature:
BLAST of CX047394 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
CYB5_TOBAC1.072e-5077.31Cytochrome b5 OS=Nicotiana tabacum PE=2 SV=1[more]
CYB5S_TOBAC1.311e-4874.79Cytochrome b5, seed isoform OS=Nicotiana tabacum P... [more]
CYB5_ORYSJ4.981e-4875.42Cytochrome b5 OS=Oryza sativa subsp. japonica GN=O... [more]
CYB5_BOROF1.110e-4775.63Cytochrome b5 OS=Borago officinalis PE=2 SV=1[more]
CYB52_ARATH7.952e-4672.03Probable cytochrome b5 isoform 2 OS=Arabidopsis th... [more]
CYB5_CUSRE2.314e-4573.11Cytochrome b5 OS=Cuscuta reflexa PE=2 SV=1[more]
CYB51_ARATH2.558e-4470.94Cytochrome b5 isoform 1 OS=Arabidopsis thaliana GN... [more]
CYB5_BRAOB3.341e-4470.94Cytochrome b5 OS=Brassica oleracea var. botrytis G... [more]
CYB5B_PONAB1.413e-1858.21Cytochrome b5 type B OS=Pongo abelii GN=CYB5B PE=2... [more]
CYB5B_HUMAN1.413e-1858.21Cytochrome b5 type B OS=Homo sapiens GN=CYB5B PE=1... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_13H08_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-13H08-O16-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047394 ID=CX047394; Name=CX047394; organism=Citrus sinensis; type=EST; length=696bp
CTGGGCACAACGACCGCAAGGACTGTTGGCTTATCATTGAGGGCAAGGTA
TATGATGTGACAAAATTCTTGGATGACCATCCTGGTGGAGACGAGGTATT
GTTGTCTGCCACAGGAAAGGATGCGACTGATGACTTTGAGGATGTTGGTC
ACAGTAGCAGTGCAAAAGCGATGATGGATGAATTCTATGTGGGTGACATT
GATTCATCAACCGTTCCCACCAAGACCAAGTACACCCCTCCCAAGCAGCC
TCACTACAACCAAGACAAGACACCCGAGTTTATTATAAAGCTCCTCCAGT
TCCTAGTTCCTCTGCTAATCTTAGGATTGGCTGTTGGCATCCGCTTCTAT
ACCAAATCCGCTTAATGATACCTTGCAAGATAAAAATACATTTACAATAA
ATCTATATCCGTTGCATTGCACCTTGTTTTTACTAGTTGTTTGGAACTAT
TATCACCAGAAAATGTAGGGTTCTTTATCTTTTGTGATGGCATGTGCTTG
TGTTTGATAAGTGACCATTCACTGCCCGCATGACTTGGAATGCAATGATC
AATTTGCAGTTCCTCGTTTTGGCTTTGCTTTCATTTTTATTCGTATGCAT
CTTCATCTAAAAGAAAGGAAGGAAAGCACCAATTGTCCAAATGGCCTTTG
GGCTTCCTTTCTCCTACATTATTTAAATTTCCTTAATTAAGTGCAA
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