CX047388

Overview
NameCX047388
Unique NameCX047388
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length786
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX047388_ssr44 microsatellite CX047388_ssr44:44..55. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX047388 vs. ExPASy Swiss-Prot
Match: LEGB_GOSHI (Legumin B OS=Gossypium hirsutum GN=LEGB PE=2 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 2.414e-52
Identity = 102/190 (53.68%), Postives = 128/190 (67.37%), Query Frame = 1
Query:   91 NACFAQIEQVTDITREGKXXXXXXXXXXXX--CNIQNLNALEPRQKVESEAGVTEFWDQNNEQLQCANVAVFRQRIQQRGLLVPAYTNTPEIFYVVQGRGIHGVVFPGCAETXXXXXXXXXXXXXXXXXXHQKVRQLREGDVIALPAGAAHWIYNNGRDQLVLVALVDVGNSQNQLDQYFRKFYLGGNPQ 654
            + C AQI+ VT+  ++                C +QNLNAL+P+ +  SEAG TEFWDQN +Q QCA VA  R +IQ++GLL+P++T+ P +FYV QG GIHG VFPGC ET                  HQK+R+L+EGDV+ALPAG AHWI+NNGR QLVLVALVDVGN  NQLD+ FRKF+L G+PQ
Sbjct:   18 HGCCAQIDLVTNHHQDPPWGQPQQPQPRHQSQCQLQNLNALQPKHRFRSEAGETEFWDQNEDQFQCAGVAFLRHKIQRKGLLLPSFTSAPMLFYVEQGEGIHGAVFPGCPET-YQSQSQQNIQDRPQRDQHQKLRRLKEGDVVALPAGVAHWIFNNGRSQLVLVALVDVGNDANQLDENFRKFFLAGSPQ 206          
BLAST of CX047388 vs. ExPASy Swiss-Prot
Match: LEGA_GOSHI (Legumin A OS=Gossypium hirsutum GN=LEGA PE=2 SV=2)

HSP 1 Score: 174.096 bits (440), Expect = 7.783e-43
Identity = 77/160 (48.12%), Postives = 107/160 (66.88%), Query Frame = 1
Query:  181 CNIQNLNALEPRQKVESEAGVTEFWDQNNEQLQCANVAVFRQRIQQRGLLVPAYTNTPEIFYVVQGRGIHGVVFPGCAETXXXXXXXXXXXXXXXXXXHQKVRQLREGDVIALPAGAAHWIYNNGRDQLVLVALVDVGNSQNQLDQYFRKFYLGGNPQPQ 660
            C I  L A  P+ ++ SEAG TE+W+ N +QL+CA V+V RQ I+  GL++P++TN P++ Y+VQGRGI G+V PGCAET                  HQKVR+ R+GD+IALP G  HW YN+G +++V + L+D GNS NQLD   R+F+L GNP+ +
Sbjct:   34 CQINRLRASAPQTRIRSEAGTTEWWNPNCQQLRCAGVSVMRQTIEPNGLVLPSFTNAPQLLYIVQGRGIQGIVMPGCAETFQDSQQWQHQSRGRFQDQHQKVRRFRQGDIIALPQGVVHWSYNDGNERVVTINLLDTGNSANQLDNIPRRFHLAGNPEEE 193          
BLAST of CX047388 vs. ExPASy Swiss-Prot
Match: 11SB_CUCMA (11S globulin subunit beta OS=Cucurbita maxima PE=1 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.468e-41
Identity = 85/233 (36.48%), Postives = 122/233 (52.36%), Query Frame = 1
Query:   91 NACFAQIEQVTDITREG-KXXXXXXXXXXXXCNIQNLNALEPRQKVESEAGVTEFWDQNNEQLQCANVAVFRQRIQQRGLLVPAYTNTPEIFYVVQGRGIHGVVFPGCAETXXXXXXXXXXXXXXXXXXHQKVRQLREGDVIALPAGAAHWIYNNGRDQLVLVALVDVGNSQNQLDQYFRKFYLGGNPQPQLXXXXXXXXXXXXXXXXXXXXXXXNLFRGFDERXLAEAFHVN 786
            N C +QIEQ +    +G +            C ++NL A +P ++ E+EA  TE WDQ+N++ QCA V + R  I+ +GLL+P ++N P++ +V QG GI G+  PGCAET                  HQK+R  REGD++ +PAG +HW+YN G+  LVL+   D  N  NQ+D Y RKFYL G P+                          N+F GF +  L EAF ++
Sbjct:   17 NGCLSQIEQQSPWEFQGSEVWQQHRYQSPRACRLENLRAQDPVRRAEAEAIFTEVWDQDNDEFQCAGVNMIRHTIRPKGLLLPGFSNAPKLIFVAQGFGIRGIAIPGCAETYQTDLRRSQSAGSAFKDQHQKIRPFREGDLLVVPAGVSHWMYNRGQSDLVLIVFADTRNVANQIDPYLRKFYLAGRPE---QVERGVEEWERSSRKGSSGEKSGNIFSGFADEFLEEAFQID 246          
BLAST of CX047388 vs. ExPASy Swiss-Prot
Match: LEGJ_PEA (Legumin J OS=Pisum sativum GN=LEGJ PE=1 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 1.089e-36
Identity = 69/162 (42.59%), Postives = 107/162 (66.05%), Query Frame = 1
Query:  181 CNIQNLNALEPRQKVESEAGVTEFWDQNNEQLQCANVAVFRQRIQQRGLLVPAYTNTPEIFYVVQGRGIHGVVFPGCAET--XXXXXXXXXXXXXXXXXXHQKVRQLREGDVIALPAGAAHWIYNNGRDQLVLVALVDVGNSQNQLDQYFRKFYLGGNPQPQ 660
            C + ++NALEP  +VESEAG+TE W+ N+ +L+CA V++ R+ I   GL +P+++ +P++ +++QG+G+ G+ FPGC ET                    HQKVR+ R+GD+IA+P+G  +W YN+G + LV ++L+D  N  NQLD   R FYLGGNP+ +
Sbjct:   33 CQLDSINALEPDHRVESEAGLTETWNPNHPELKCAGVSLIRRTIDPNGLHLPSFSPSPQLIFIIQGKGVLGLSFPGCPETYEEPRSSQSRQESRQQQGDSHQKVRRFRKGDIIAIPSGIPYWTYNHGDEPLVAISLLDTSNIANQLDSTPRVFYLGGNPETE 194          
BLAST of CX047388 vs. ExPASy Swiss-Prot
Match: LEGB4_VICFA (Legumin type B OS=Vicia faba GN=LEB4 PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 1.089e-36
Identity = 69/160 (43.12%), Postives = 104/160 (65.00%), Query Frame = 1
Query:  181 CNIQNLNALEPRQKVESEAGVTEFWDQNNEQLQCANVAVFRQRIQQRGLLVPAYTNTPEIFYVVQGRGIHGVVFPGCAET--XXXXXXXXXXXXXXXXXXHQKVRQLREGDVIALPAGAAHWIYNNGRDQLVLVALVDVGNSQNQLDQYFRKFYLGGNPQ 654
            C + N+NALEP  +VESEAG+TE W+ N+ +L+CA V++ R+ I   GL +P+Y+ +P++ Y++QG+G+ G+  PGC +T                    HQK+R+ R+GD+IA+P+G  +W YNNG + LV ++L+D  N  NQLD   R FYL GNP+
Sbjct:   33 CRLDNINALEPDHRVESEAGLTETWNPNHPELRCAGVSLIRRTIDPNGLHLPSYSPSPQLIYIIQGKGVIGLTLPGCPQTYQEPRSSQSRQGSRQQQPDSHQKIRRFRKGDIIAIPSGIPYWTYNNGDEPLVAISLLDTSNIANQLDSTPRVFYLVGNPE 192          
BLAST of CX047388 vs. ExPASy Swiss-Prot
Match: LEGA2_PEA (Legumin A2 OS=Pisum sativum GN=LEGA2 PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.857e-36
Identity = 77/202 (38.12%), Postives = 108/202 (53.47%), Query Frame = 1
Query:  181 CNIQNLNALEPRQKVESEAGVTEFWDQNNEQLQCANVAVFRQRIQQRGLLVPAYTNTPEIFYVVQGRGIHGVVFPGCAETXXXXXXXXXXXXXXXXXXHQKVRQLREGDVIALPAGAAHWIYNNGRDQLVLVALVDVGNSQNQLDQYFRKFYLGGNPQPQLXXXXXXXXXXXXXXXXXXXXXXXNLFRGFDERXLAEAFHVN 786
            C ++ LNALEP  ++ESE G+ E W+ NN+Q +CA VA+ R  +Q   L  P Y+N P+  ++ QG G  G+VFPGC ET                  HQKV + REGD+IA+P G   W+YN+    ++ V+L D+ +S NQLDQ  R+FYL GN + +                        N+F GF    L +AF+VN
Sbjct:   32 CQLERLNALEPDNRIESEGGLIETWNPNNKQFRCAGVALSRATLQHNALRRPYYSNAPQEIFIQQGNGYFGMVFPGCPETFEEPQESEQGEGRRYRDRHQKVNRFREGDIIAVPTGIVFWMYNDQDTPVIAVSLTDIRSSNNQLDQMPRRFYLAGNHEQEF-----LRYQHQQGGKQEQENEGNNIFSGFKRDFLEDAFNVN 228          
BLAST of CX047388 vs. ExPASy Swiss-Prot
Match: GLUB2_ORYSJ (Glutelin type-B 2 OS=Oryza sativa subsp. japonica GN=GLUB2 PE=2 SV=2)

HSP 1 Score: 152.14 bits (383), Expect = 3.167e-36
Identity = 81/206 (39.32%), Postives = 106/206 (51.46%), Query Frame = 1
Query:  181 CNIQNLNALEPRQKVESEAGVTEFWDQNNEQLQCANVAVFRQRIQQRGLLVPAYTNTPEIFYVVQGRGIHGVVFPGCAET----XXXXXXXXXXXXXXXXXXHQKVRQLREGDVIALPAGAAHWIYNNGRDQLVLVALVDVGNSQNQLDQYFRKFYLGGNPQPQLXXXXXXXXXXXXXXXXXXXXXXXNLFRGFDERXLAEAFHVN 786
            C    L A EP +KV SEAGVTE++D+ NE  QC    V R+ IQ +GLLVP Y+NTP + Y++QGRG  G+ FPGC  T                      HQK+ Q R+GDV+ALPAG AHW YN+G   +V + + D+ NS NQL+   ++F L GN                            N+F GF    L+EA  +N
Sbjct:   45 CRFDRLQAFEPLRKVRSEAGVTEYFDEKNELFQCTGTFVIRRVIQPQGLLVPRYSNTPGLVYIIQGRGSMGLTFPGCPATYQQQFQQFSSQGQSQSQKFRDEHQKIHQFRQGDVVALPAGVAHWFYNDGDASVVAIYVYDINNSANQLEPRQKEFLLAGN----------NNRVQQVYGSSIEQHSSQNIFNGFGTELLSEALGIN 240          
BLAST of CX047388 vs. ExPASy Swiss-Prot
Match: CRU1_RAPSA (Cruciferin PGCRURSE5 OS=Raphanus sativus GN=CRURS PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 3.167e-36
Identity = 87/209 (41.63%), Postives = 113/209 (54.07%), Query Frame = 1
Query:  181 CNIQNLNALEPRQKVESEAGVTEFWDQNNEQLQCANVAVFRQRIQQRGLLVPAYTNTPEIFYVVQGRGIHGVVFPGCAET-----------XXXXXXXXXXXXXXXXXXHQKVRQLREGDVIALPAGAAHWIYNNGRDQLVLVALVDVGNSQNQLDQYFRKFYLGGNPQPQLXXXXXXXXXXXXXXXXXXXXXXXNLFRGFDERXLAEA 774
            CN+ NL+ L+P + ++SEAG  E+WD N+ QL+CA V+V R  I+Q GL +P + ++P+I YVVQG GI G V PGCAET                             HQKV  +R GDVIA+ AG+AHWIYN G   LV+V L+D+ N QNQLD+  R F L GN  PQ                        N+  GFD + LA+A
Sbjct:   37 CNLDNLDVLQPTETIKSEAGRLEYWDHNHPQLRCAGVSVSRLIIEQGGLYLPTFFSSPKIAYVVQGMGISGRVVPGCAETFMDSQPMQGQGQQGQQGQQGQQQQGFRDMHQKVEHVRHGDVIAITAGSAHWIYNTGDQPLVIVCLLDIANYQNQLDRNPRTFRLAGN-NPQ------------GGSHQQQQQQQQNMLSGFDPQVLAQA 232          
BLAST of CX047388 vs. ExPASy Swiss-Prot
Match: LEGA_PEA (Legumin A OS=Pisum sativum GN=LEGA PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 5.403e-36
Identity = 76/202 (37.62%), Postives = 109/202 (53.96%), Query Frame = 1
Query:  181 CNIQNLNALEPRQKVESEAGVTEFWDQNNEQLQCANVAVFRQRIQQRGLLVPAYTNTPEIFYVVQGRGIHGVVFPGCAETXXXXXXXXXXXXXXXXXXHQKVRQLREGDVIALPAGAAHWIYNNGRDQLVLVALVDVGNSQNQLDQYFRKFYLGGNPQPQLXXXXXXXXXXXXXXXXXXXXXXXNLFRGFDERXLAEAFHVN 786
            C ++ L+ALEP  ++ESE G+ E W+ NN+Q +CA VA+ R  +Q+  L  P Y+N P+  ++ QG G  G+VFPGC ET                  HQKV + REGD+IA+P G   W+YN+    ++ V+L D+ +S NQLDQ  R+FYL GN + +                        N+F GF    L +AF+VN
Sbjct:   31 CQLERLDALEPDNRIESEGGLIETWNPNNKQFRCAGVALSRATLQRNALRRPYYSNAPQEIFIQQGNGYFGMVFPGCPETFEEPQESEQGEGRRYRDRHQKVNRFREGDIIAVPTGIVFWMYNDQDTPVIAVSLTDIRSSNNQLDQMPRRFYLAGNHEQEF-----LQYQHQQGGKQEQENEGNNIFSGFKRDYLEDAFNVN 227          
BLAST of CX047388 vs. ExPASy Swiss-Prot
Match: GLUB5_ORYSJ (Glutelin type-B 5 OS=Oryza sativa subsp. japonica GN=GLUB5 PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.204e-35
Identity = 79/206 (38.35%), Postives = 108/206 (52.43%), Query Frame = 1
Query:  181 CNIQNLNALEPRQKVESEAGVTEFWDQNNEQLQCANVAVFRQRIQQRGLLVPAYTNTPEIFYVVQGRGIHGVVFPGCAET----XXXXXXXXXXXXXXXXXXHQKVRQLREGDVIALPAGAAHWIYNNGRDQLVLVALVDVGNSQNQLDQYFRKFYLGGNPQPQLXXXXXXXXXXXXXXXXXXXXXXXNLFRGFDERXLAEAFHVN 786
            C    L A EP ++V SEAGVTE++D+ NEQ QC    V R+ I+ +GLLVP Y+NTP + Y++QGRG  G+ FPGC  T                      HQK+ Q R+GD++ALPAG AHW YN G   +V + + D+ N+ NQL+   ++F L GN   +                        N+F GF+   L+EA  VN
Sbjct:   45 CRFDRLQAFEPLRRVRSEAGVTEYFDEKNEQFQCTGTFVIRRVIEPQGLLVPRYSNTPGMVYIIQGRGSMGLTFPGCPATYQQQFQQFLPEGQSQSQKFRDEHQKIHQFRQGDIVALPAGVAHWFYNEGDAPVVALYVFDLNNNANQLEPRQKEFLLAGNNNRE----------QQMYGRSIEQHSGQNIFSGFNNELLSEALGVN 240          
The following BLAST results are available for this feature:
BLAST of CX047388 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
LEGB_GOSHI2.414e-5253.68Legumin B OS=Gossypium hirsutum GN=LEGB PE=2 SV=1[more]
LEGA_GOSHI7.783e-4348.13Legumin A OS=Gossypium hirsutum GN=LEGA PE=2 SV=2[more]
11SB_CUCMA1.468e-4136.4811S globulin subunit beta OS=Cucurbita maxima PE=1... [more]
LEGJ_PEA1.089e-3642.59Legumin J OS=Pisum sativum GN=LEGJ PE=1 SV=1[more]
LEGB4_VICFA1.089e-3643.13Legumin type B OS=Vicia faba GN=LEB4 PE=3 SV=1[more]
LEGA2_PEA1.857e-3638.12Legumin A2 OS=Pisum sativum GN=LEGA2 PE=3 SV=1[more]
GLUB2_ORYSJ3.167e-3639.32Glutelin type-B 2 OS=Oryza sativa subsp. japonica ... [more]
CRU1_RAPSA3.167e-3641.63Cruciferin PGCRURSE5 OS=Raphanus sativus GN=CRURS ... [more]
LEGA_PEA5.403e-3637.62Legumin A OS=Pisum sativum GN=LEGA PE=2 SV=1[more]
GLUB5_ORYSJ1.204e-3538.35Glutelin type-B 5 OS=Oryza sativa subsp. japonica ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_13H05_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-13H05-O10-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047388 ID=CX047388; Name=CX047388; organism=Citrus sinensis; type=EST; length=786bp
TTTTCTTTTCTAAAAACAATTTTGGGCTTTTTTCTCAAAATGGCTTCTTC
TTCTTTGCTCTGTTTTGGCCTTTGCCTTCTAGTTCTCTTCAACGCCTGCT
TTGCTCAAATAGAGCAGGTAACAGACATAACTAGGGAAGGAAAGCAGCAA
AGGCAACGGCAGCAACGCTTCCAAACCCAGTGCAATATCCAGAACCTCAA
CGCCCTTGAGCCCCGACAGAAGGTCGAATCCGAAGCTGGCGTCACAGAGT
TCTGGGACCAGAACAATGAGCAATTACAGTGCGCCAATGTTGCCGTATTT
CGCCAACGTATCCAGCAGAGAGGGCTGCTCGTGCCTGCGTACACCAACAC
TCCTGAGATTTTCTATGTTGTTCAAGGTAGAGGCATTCATGGAGTTGTAT
TCCCCGGATGTGCTGAGACTTTCCAAGATTCACAACAACAGCAGTCGTTC
CAGGGCAGTAAATCCCAAGATCAACACCAAAAGGTCAGACAACTACGTGA
GGGTGATGTCATTGCATTGCCTGCTGGAGCAGCTCACTGGATTTACAACA
ATGGCCGGGACCAGCTTGTTTTGGTCGCCCTCGTTGACGTTGGCAATTCT
CAAAACCAGCTTGATCAGTACTTCAGGAAATTCTACCTCGGTGGCAACCC
ACAACCACAACTCCAAGGTTTCAGTCAAAGTCAAGGTGGCAGAAGTCAGG
GAAGCCAAGGCAGCGACGACGGGAGAGGTGGCAATCTCTTTAGAGGCTTT
GACGAGCGGNTGTTGGCTGAGGCCTTTCACGTGAAC
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