CX047379

Overview
NameCX047379
Unique NameCX047379
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length877
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX047379 vs. ExPASy Swiss-Prot
Match: FBK22_ARATH (F-box/kelch-repeat protein At1g55270 OS=Arabidopsis thaliana GN=At1g55270 PE=2 SV=1)

HSP 1 Score: 399.438 bits (1025), Expect = 1.350e-110
Identity = 184/222 (82.88%), Postives = 200/222 (90.09%), Query Frame = 3 
Query:  210 QQQSSNALRGFRVQAPLVDSVSCYCKVDAGLKTVAEARKFVPGSKLCIQPDINPNAHKSKNSRRERSRIQXXXXXXXXXXXAIACLIRVPRAEHRKLRLVCKRWYRLLAGNYFYSLRKSLGMAEEWVYVFKRDRDGKISWNAFDPVYQLWQPLPPVPKEYSEALGFGCAVLSGCHLYLFGGKDPLRGSMRRVIFYSARTNKWHRAPDMLRKRHFFGSCVLNN 875
            Q+QS N  RGFR+QAPLVDSVSCYC+VD+GLKTV EARKFVPGSKLCIQPDINPNAH+ KNS+RER+RIQ           A+ACLIRVPRAEHRKLRLVCKRWYRL +GN+FYS RK LGM+EEWVYVFKRDRDGKISWN FDP+ QLWQPLPPVP+EYSEA+GFGCAVLSGCHLYLFGGKDPLRGSMRRVIFY+ARTNKWHRAPDMLRKRHFFG CV+NN
Sbjct:    6 QRQSPNGSRGFRLQAPLVDSVSCYCRVDSGLKTVVEARKFVPGSKLCIQPDINPNAHRRKNSKRERTRIQPPLLPGLPDDLAVACLIRVPRAEHRKLRLVCKRWYRLASGNFFYSQRKLLGMSEEWVYVFKRDRDGKISWNTFDPISQLWQPLPPVPREYSEAVGFGCAVLSGCHLYLFGGKDPLRGSMRRVIFYNARTNKWHRAPDMLRKRHFFGCCVINN 227
[Close]
BLAST of CX047379 vs. ExPASy Swiss-Prot
Match: FBK8_ARATH (F-box/kelch-repeat protein At1g22040 OS=Arabidopsis thaliana GN=At1g22040 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.833e-13
Identity = 34/76 (44.74%), Postives = 47/76 (61.84%), Query Frame = 3 
Query:  453 AIACLIRVPRAEHRKLRLVCKRWYRLLAGNYFYSLRKSLGMAEEWVYVFKRDRDGKISWNAFDPVYQLWQPLPPVP 680
            +I  L R+PR  +  +RLV +RW   ++ +  YSLRK LG  EEW+YV  +  + K+ W A DPV   WQ LPP+P
Sbjct:   52 SIQILARLPRICYSSVRLVSRRWRSAVSTSEVYSLRKELGRTEEWLYVLTKGHEDKLLWYALDPVSTKWQRLPPMP 127
The following BLAST results are available for this feature:
BLAST of CX047379 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
FBK22_ARATH1.350e-11082.88F-box/kelch-repeat protein At1g55270 OS=Arabidopsi... [more]
FBK8_ARATH5.833e-1344.74F-box/kelch-repeat protein At1g22040 OS=Arabidopsi... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS09_13G09_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-13G09-M18-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047379 ID=CX047379; Name=CX047379; organism=Citrus sinensis; type=EST; length=877bp
AAAAGGCTCTTCAGTTAAGTTTTGTTTTTGTCAACTCTTTGTTTGCATTT
GCAGAGGCAAAAAAAGGCAACATTTTTAACAATTACAGACAGTAAAGCAA
GGCCTCTTTGGATCAAGTCTCTTTTTCTTGATCTAAATTTGAAGATTGGA
GCTATTTGAGCTTGTTTTGGGTTCTGGGTGTCTATGAATTTTTGCTTGTG
AAGATGGAACAACAACAGTCTTCAAATGCTTTAAGAGGGTTTCGAGTTCA
AGCTCCATTGGTTGATTCTGTTTCATGCTATTGCAAAGTAGATGCTGGGC
TAAAAACCGTTGCTGAAGCAAGGAAATTTGTTCCAGGATCTAAACTATGT
ATCCAGCCTGATATCAATCCTAATGCACACAAAAGCAAAAACTCAAGGAG
GGAGAGGAGCAGAATCCAGCCACCACTCTTGCCTGGCCTTCCTGATGATC
TGGCGATTGCATGTTTGATTCGAGTTCCTCGCGCTGAACATCGAAAACTT
CGTCTTGTTTGTAAGAGATGGTACCGCCTGCTCGCTGGAAACTACTTTTA
TTCTCTTAGAAAAAGTCTAGGAATGGCTGAAGAGTGGGTTTATGTCTTCA
AGCGAGATCGTGATGGAAAGATATCATGGAATGCTTTCGACCCTGTCTAT
CAGCTCTGGCAACCACTTCCACCAGTTCCCAAAGAATATTCTGAGGCCCT
TGGTTTCGGCTGTGCTGTTCTAAGCGGCTGCCATCTATACTTATTTGGAG
GAAAGGATCCACTTAGGGGGTCCATGAGACGGGTCATTTTCTACAGTGCC
CGAACAAATAAATGGCATAGGGCGCCTGATATGCTTCGGAAACGTCATTT
CTTTGGTTCTTGTGTCCTAAATAACTG
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