CX047378

Overview
NameCX047378
Unique NameCX047378
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length856
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX047378 vs. ExPASy Swiss-Prot
Match: FBK22_ARATH (F-box/kelch-repeat protein At1g55270 OS=Arabidopsis thaliana GN=At1g55270 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.639e-12
Identity = 41/75 (54.67%), Postives = 52/75 (69.33%), Query Frame = -1 
Query:  632 AIVPLNGKLCIIRXXXXXXXXXXXXXDKHVESNPHIWENIAGKGHFRTLVTNLLSSIAGRSGLKSHIVHCQVLQA 856
            A+VPL+ KLCIIR             DK+   NP +WENIA KG  +++++N+ SSIAGR+ LKSHIVHCQVLQA
Sbjct:  364 ALVPLHNKLCIIRNNMSMSLVDVSNPDKN---NPRLWENIAVKGQSKSILSNIWSSIAGRA-LKSHIVHCQVLQA 434
The following BLAST results are available for this feature:
BLAST of CX047378 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
FBK22_ARATH1.639e-1254.67F-box/kelch-repeat protein At1g55270 OS=Arabidopsi... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS09_13G09_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-13G09-M18-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047378 ID=CX047378; Name=CX047378; organism=Citrus sinensis; type=EST; length=856bp
TTTTTTTTTTAGCCATAGAGATGTGATCTAAGTATATATTGACTCATCTT
ATGTAACCCATGTACATTCACAAAAGCATCTCAAAGACTACATTCTACAT
ACAACTAAGATAAAAGACTCCAAAATACAAAGAAAGACTCCGCCCTAAAA
ACCAAATTGACTAAGATTTACATGTATCTGCTCTCTTCCTGAATGTAATC
AAATGGCCCATAACTCTATTACCCAAATCAACGGTAACTCTGCCTTGCCT
CCAAATAAGGGATTACCACCCGAAAAGTTTCACCATACCTCTCACATGAA
ATGTCAGGGATAATTTTGCCATCTCCATATTCACGGCACCTTATCGACAA
CAACCTGAAGAACATTTATCATTTTCACTTTCCCAAGCCTCAGCATGAGC
AAAACAATCTAACAAGAAAAAATCCAATAACTCCCCAGGCACATCATTGT
CAATTCAATCTCTGCAAAATTGAAGATCAGAGCAGTAACAGAGAGTATAT
GAAGCTTTCTGGAACAAAAAATGCAGAATTCCCATATAGGTTAACTGCAA
ATATGAAAACCCATCACAGCCAAGTGAAGGAAATGCACAAATTGCTATGG
TAAGCATGAGCAAAATCAATTATGGGCTTCACGCTTGAAGCACCTGACAG
TGCACAATGTGACTTTTCAAACCACTCCGGCCTGCTATGCTAGACAGTAA
ATTTGTGACAAGAGTCCTGAAATGACCTTTCCCAGCAATATTTTCCCATA
TGTGTGGATTACTCTCCACATGTTTGTCANGACTAGAAACATCAACCATA
CTAATGCTCATGTTGTTACGAATGATACAAAGTTTCCCATTCAGGGGAAC
AATTGC
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