CX047377

Overview
NameCX047377
Unique NameCX047377
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length821
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX047377_ssr159 microsatellite CX047377_ssr159:159..170. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX047377 vs. ExPASy Swiss-Prot
Match: XTH33_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 33 OS=Arabidopsis thaliana GN=XTH33 PE=2 SV=2)

HSP 1 Score: 334.724 bits (857), Expect = 3.703e-91
Identity = 149/211 (70.62%), Postives = 178/211 (84.36%), Query Frame = -3
Query:  196 GVVLAFYLSNADSYPHNHDEIDIELLGHDKRNDWVLQTNIYANGGVSTGREEKFYFWFDPTAQHHYYSIIWNSHHIVFLVDNVPVREFPNTGAFSSVYPSKPMSVYVTIWDGSQWATHGGKYPVNYKYAPFVVSLAEMEMAGCVLSN---SASAPASCSKGSASSLDPVDGQQFTTLSKQQVAALDWSRRKLMFYSYCKDTTRFKVMPPEC 819
            GVV+AFYLSNA++YP +HDEIDIELLG  +R+DW +QTN+YANG   TGREEKFYFWFDPT   H Y++IWNSHH VFLVDN+PVR+FPN GAF+S YPSKPMS+YVT+WDGS+WAT GGKYPVNYKYAPFVVS+A++E++GC ++N   + S P + S GS SSLDPVDGQ F TLSK Q+ A+DW+RRKLMFYSYC D  R+KVMP EC
Sbjct:   99 GVVVAFYLSNAETYPKSHDEIDIELLGRSRRDDWTIQTNVYANGSTRTGREEKFYFWFDPTQAFHDYTLIWNSHHTVFLVDNIPVRQFPNRGAFTSAYPSKPMSLYVTVWDGSEWATKGGKYPVNYKYAPFVVSVADVELSGCSVNNGSSTGSGPCTKSGGSISSLDPVDGQDFATLSKNQINAMDWARRKLMFYSYCSDKPRYKVMPAEC 309          
BLAST of CX047377 vs. ExPASy Swiss-Prot
Match: XTH27_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 27 OS=Arabidopsis thaliana GN=XTH27 PE=2 SV=2)

HSP 1 Score: 219.935 bits (559), Expect = 1.329e-56
Identity = 101/208 (48.56%), Postives = 134/208 (64.42%), Query Frame = -3
Query:  196 GVVLAFYLSNADSYPHNHDEIDIELLGHDKRNDWVLQTNIYANGGVSTGREEKFYFWFDPTAQHHYYSIIWNSHHIVFLVDNVPVREFPNTGAFSSVYPSKPMSVYVTIWDGSQWATHGGKYPVNYKYAPFVVSLAEMEMAGCVLSNSASAPASCSKGSASSLDPVDGQQFTTLSKQQVAALDWSRRKLMFYSYCKDTTRFKVMPPEC 819
            GVV+AFY+SN D Y  NHDEID E LG+ +  +W +QTNIY NG   +GREE++  WFDPT   H YSI+W+  HI+F VDNVP+RE   T      +PSKPMS+Y TIWDGS+WAT+GGKY VNYKYAP++   +++ + GC +      P  C +G+A      D +    ++  Q + +D  RR+LM YSYC D  R+ V   EC
Sbjct:   89 GVVVAFYMSNGDMYEKNHDEIDFEFLGNIREKEWRVQTNIYGNGSTHSGREERYNLWFDPTEDFHQYSILWSDSHIIFFVDNVPIREVKRTAEMGGHFPSKPMSLYTTIWDGSKWATNGGKYGVNYKYAPYIARFSDLVLHGCPVDPIEQFP-RCDEGAAE-----DMRAAQEITPSQRSKMDVFRRRLMTYSYCYDRARYNVALSEC 290          
BLAST of CX047377 vs. ExPASy Swiss-Prot
Match: XTH30_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 30 OS=Arabidopsis thaliana GN=XTH30 PE=2 SV=2)

HSP 1 Score: 212.616 bits (540), Expect = 2.123e-54
Identity = 96/208 (46.15%), Postives = 129/208 (62.02%), Query Frame = -3
Query:  196 GVVLAFYLSNADSYPHNHDEIDIELLGHDKRNDWVLQTNIYANGGVSTGREEKFYFWFDPTAQHHYYSIIWNSHHIVFLVDNVPVREFPNTGAFSSVYPSKPMSVYVTIWDGSQWATHGGKYPVNYKYAPFVVSLAEMEMAGCVLSNSASAPASCSKGSASSLDPVDGQQFTTLSKQQVAALDWSRRKLMFYSYCKDTTRFKVMPPEC 819
            GVV+AFY SN D +   HDE+DIE LG+ K   W  QTN+Y NG    GREE++  WFDP+ + H YSI+W  H I+F VD+VP+RE     A  + YP+KPM++Y TIWD S WAT GGKY  NYK+APFV       + GC +      P  CS     S+D ++ Q +++++  Q AA+   R++ M+YSYC DT R+    PEC
Sbjct:   90 GVVVAFYTSNGDVFEKTHDELDIEFLGNIKGKPWRFQTNLYGNGSTHRGREERYRLWFDPSKEFHRYSILWTPHKIIFWVDDVPIREVIRNDAMGADYPAKPMALYATIWDASDWATSGGKYKANYKFAPFVAEFKSFSLDGCSVDPIQEVPMDCS----DSVDFLESQDYSSINSHQRAAMRRFRQRFMYYSYCYDTLRYPEPLPEC 293          
BLAST of CX047377 vs. ExPASy Swiss-Prot
Match: XTH28_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 28 OS=Arabidopsis thaliana GN=XTH28 PE=2 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 2.772e-54
Identity = 100/208 (48.08%), Postives = 134/208 (64.42%), Query Frame = -3
Query:  196 GVVLAFYLSNADSYPHNHDEIDIELLGHDKRNDWVLQTNIYANGGVSTGREEKFYFWFDPTAQHHYYSIIWNSHHIVFLVDNVPVREFPNTGAFSSVYPSKPMSVYVTIWDGSQWATHGGKYPVNYKYAPFVVSLAEMEMAGCVLSNSASAPASCSKGSASSLDPVDGQQFTTLSKQQVAALDWSRRKLMFYSYCKDTTRFKVMPPEC 819
            GVV+AFYLSN D Y  NHDEID E LG+ +  +W +QTNIY NG    GREE++  WFDPT   H YSI+W+  HI+F VDNVP+RE   T +    +P+KPMS+Y TIWDGS+WAT GGKY VNYKYAP+V    ++ + GC +  +   P SC   +  +L     +  + +++ Q   ++  R+K M YSYC D  R+KV+  EC
Sbjct:   89 GVVIAFYLSNGDLYEKNHDEIDFEFLGNIRGREWRIQTNIYGNGSTHLGREERYNLWFDPTEDFHQYSILWSLSHIIFYVDNVPIREVKRTASMGGDFPAKPMSLYSTIWDGSKWATDGGKYGVNYKYAPYVSQFTDLILHGCAVDPTEKFP-SCKDEAVQNL-----RLASEITESQRNKMEIFRQKHMTYSYCYDHMRYKVVLSEC 290          
BLAST of CX047377 vs. ExPASy Swiss-Prot
Match: XTH29_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 29 OS=Arabidopsis thaliana GN=XTH29 PE=2 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 3.507e-49
Identity = 92/215 (42.79%), Postives = 134/215 (62.33%), Query Frame = -3
Query:  196 GVVLAFYLSNADSYPHNHDEIDIELLGHDKRNDWVLQTNIYANGGVSTGREEKFYFWFDPTAQHHYYSIIWNSHHIVFLVDNVPVREFPNTGAFSSVYPSKPMSVYVTIWDGSQWATHGGKYPVNYKYAPFVVSLAEMEMAGCVLSNSASAPASCSK-GSASSLDPVDGQQF------TTLSKQQVAALDWSRRKLMFYSYCKDTTRFKVMPPEC 819
            G+V+AFY SN D +  +HDE+DIE LG+ +   W  QTN+Y NG  + GREE++  WFDP+ + H YSI+W    I+F VD+VP+RE       +  YP KPMS+Y TIWD S WAT GGK+ V+Y ++PFV    ++ + GC +S+S     + +  G+ ++++     QF      +T+S +Q  A+   R + M+YSYC DT R+ V PPEC
Sbjct:   98 GIVVAFYTSNGDVFVKDHDELDIEFLGNLEGKPWRFQTNMYGNGSTNRGREERYRLWFDPSKEFHRYSILWTPTKIIFWVDDVPIREILRKEEMNGDYPQKPMSLYATIWDASSWATSGGKFGVDYTFSPFVSEFKDIALDGCNVSDSFPGENNNNNIGNYNNINCSVSDQFLMSNDYSTISPKQATAMRRFRERYMYYSYCYDTIRYSVPPPEC 312          
BLAST of CX047377 vs. ExPASy Swiss-Prot
Match: XTH31_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 31 OS=Arabidopsis thaliana GN=XTH31 PE=2 SV=2)

HSP 1 Score: 172.555 bits (436), Expect = 2.434e-42
Identity = 85/211 (40.28%), Postives = 122/211 (57.82%), Query Frame = -3
Query:  196 GVVLAFYLSNADSYPHNHDEIDIELLGHDKRNDWVLQTNIYANGGVST---GREEKFYFWFDPTAQHHYYSIIWNSHHIVFLVDNVPVREFPNTGAFSSVYPSKPMSVYVTIWDGSQWATHGGKYPVNYKYAPFVVSLAEMEMAGCVLSNSASAPASCSKGSASSLDPVDGQQFTTLSKQQVAALDWSRRKLMFYSYCKDTTRFKVMPPEC 819
            GV  + YLSN   +P +HDE+DIE LG      + LQTN++  G       GRE KF  WFDPT   H+Y+I+WN + IVF VD+VP+R +       +++P++PM VY +IWD S WAT  G+   +Y+Y PFV      ++AGC    +A + +SC   S + +      +   LS+QQ+AAL W++R  + Y+YC D  R     PEC
Sbjct:   95 GVDTSLYLSNNQEHPGDHDEVDIEFLGTTPGKPYSLQTNVFVRGSGDRNVIGREMKFTLWFDPTQDFHHYAILWNPNQIVFFVDDVPIRTYNRKN--EAIFPTRPMWVYGSIWDASDWATENGRIKADYRYQPFVAKYKNFKLAGC----TADSSSSCRPPSPAPM------RNRGLSRQQMAALTWAQRNFLVYNYCHDPKRDHTQTPEC 293          
BLAST of CX047377 vs. ExPASy Swiss-Prot
Match: XTH32_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 32 OS=Arabidopsis thaliana GN=XTH32 PE=2 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 4.152e-42
Identity = 88/211 (41.71%), Postives = 120/211 (56.87%), Query Frame = -3
Query:  196 GVVLAFYLSNADSYPHNHDEIDIELLGHDKRNDWVLQTNIYANG---GVSTGREEKFYFWFDPTAQHHYYSIIWNSHHIVFLVDNVPVREFPNTGAFSSVYPSKPMSVYVTIWDGSQWATHGGKYPVNYKYAPFVVSLAEMEMAGCVLSNSASAPASCSKGSASSLDPVDGQQFTTLSKQQVAALDWSRRKLMFYSYCKDTTRFKVMPPEC 819
            GV+ + YLSN +++P  HDE+DIE LG      + LQTN+Y  G   G   GRE KF  WFDPT   H+Y+I+W+   I+FLVD++P+R +P   A  S +P +PM +Y +IWD S WAT  GKY  +YKY PF       +  GC    +A + A C   SAS        +   L++QQ  A+ W +   M Y+YCKD  R   + PEC
Sbjct:   99 GVITSLYLSNNEAHPGFHDEVDIEFLGTTFGKPYTLQTNVYIRGSGDGKIIGREMKFRLWFDPTKDFHHYAILWSPREIIFLVDDIPIRRYPKKSA--STFPLRPMWLYGSIWDASSWATEDGKYKADYKYQPFTAKYTNFKALGC----TAYSSARCYPLSASP------YRSGGLTRQQHQAMRWVQTHSMVYNYCKDYKRDHSLTPEC 297          
BLAST of CX047377 vs. ExPASy Swiss-Prot
Match: XTH4_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 4 OS=Arabidopsis thaliana GN=XTH4 PE=1 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.929e-39
Identity = 86/210 (40.95%), Postives = 116/210 (55.24%), Query Frame = -3
Query:  193 GVVLAFYLSNADSYPHNHDEIDIELLGHDKRNDWVLQTNIYANGGVSTGREEKFYFWFDPTAQHHYYSIIWNSHHIVFLVDNVPVREFPNTGAFSSVYP-SKPMSVYVTIWDGSQWATHGGKYPVNYKYAPFVVSLAEMEMAGCVLSNSASAPASCSKGSASSLDPVDGQQFTTLSKQQVAALDWSRRKLMFYSYCKDTTRFKVMPPECK 819
            GVV AFYLS+ ++    HDEID E LG+      +LQTN++  G     RE++ Y WFDP+  +H YSI+WN + IVF VDN+P+R F N       +P ++PM +Y ++W+   WAT GG    N+  APFV S     + GC  S  A   A+  +         D ++F  L  +Q   L W R K   Y+YC D TRF VMP ECK
Sbjct:   93 GVVTAFYLSSTNN---EHDEIDFEFLGNRTGQPAILQTNVFTGG--KGNREQRIYLWFDPSKAYHTYSILWNMYQIVFFVDNIPIRTFKNAKDLGVRFPFNQPMKLYSSLWNADDWATRGGLEKTNWANAPFVASYKGFHIDGCQASVEAKYCATQGRMW------WDQKEFRDLDAEQWRRLKWVRMKWTIYNYCTDRTRFPVMPAECK 291          
BLAST of CX047377 vs. ExPASy Swiss-Prot
Match: XTH1_SOLLC (Probable xyloglucan endotransglucosylase/hydrolase 1 OS=Solanum lycopersicum GN=XTH1 PE=2 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 5.612e-39
Identity = 81/209 (38.76%), Postives = 114/209 (54.55%), Query Frame = -3
Query:  196 GVVLAFYLSNADSYPHNHDEIDIELLGHDKRNDWVLQTNIYANGGVSTGREEKFYFWFDPTAQHHYYSIIWNSHHIVFLVDNVPVREFPNTGAFSSVYP-SKPMSVYVTIWDGSQWATHGGKYPVNYKYAPFVVSLAEMEMAGCVLSNSASAPASCSKGSASSLDPVDGQQFTTLSKQQVAALDWSRRKLMFYSYCKDTTRFKVMPPEC 819
            GVV AFYLS+ ++    HDEID E LG+     ++LQTN++  G     RE++ Y WFDPT  +H YS++WN++ IV  VD+VP+R F N+      +P ++PM +Y ++WD   WAT GG    N+  APF  S     + GC     A+ P      +   +   D + F  L   Q   L W R+K   Y+YC D  R+ V PPEC
Sbjct:   91 GVVTAFYLSSNNA---EHDEIDFEFLGNRTGQPYILQTNVFTGG--KGNREQRIYLWFDPTKGYHSYSVLWNTYLIVIFVDDVPIRAFKNSKDLGVKFPFNQPMKIYSSLWDADDWATRGGLEKTNWANAPFTASYTSFHVDGC----EAATPQEVQVCNTKGMKWWDQKAFQDLDALQYRRLRWVRQKYTVYNYCTDKARYPVPPPEC 290          
BLAST of CX047377 vs. ExPASy Swiss-Prot
Match: XTH_BRAOB (Xyloglucan endotransglucosylase/hydrolase OS=Brassica oleracea var. botrytis GN=XET16A PE=1 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 9.572e-39
Identity = 83/210 (39.52%), Postives = 115/210 (54.76%), Query Frame = -3
Query:  193 GVVLAFYLSNADSYPHNHDEIDIELLGHDKRNDWVLQTNIYANGGVSTGREEKFYFWFDPTAQHHYYSIIWNSHHIVFLVDNVPVREFPNTGAFSSVYP-SKPMSVYVTIWDGSQWATHGGKYPVNYKYAPFVVSLAEMEMAGCVLSNSASAPASCSKGSASSLDPVDGQQFTTLSKQQVAALDWSRRKLMFYSYCKDTTRFKVMPPECK 819
            GVV AFYLS+ ++    HDEID E LG+      +LQTN++  G     RE++ Y WFDP+  +H YS++WN + IVF VDN+P+R F N       +P ++PM +Y ++W+   WAT GG    N+  APF+ S     + GC  S  A   A+  +         D  +F  L  +Q   L W R K   Y+YC D TRF VMP EC+
Sbjct:   92 GVVTAFYLSSTNN---EHDEIDFEFLGNRTGQPVILQTNVFTGG--KGNREQRIYLWFDPSKAYHTYSVLWNLYQIVFFVDNIPIRVFKNAKDLGVRFPFNQPMKLYSSLWNADDWATRGGLEKTNWANAPFIASYRGFHIDGCQASVEAKYCATQGRMW------WDQNEFRDLDAEQYRRLKWVRMKWTIYNYCTDRTRFPVMPAECR 290          
The following BLAST results are available for this feature:
BLAST of CX047377 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
XTH33_ARATH3.703e-9170.62Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH27_ARATH1.329e-5648.56Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH30_ARATH2.123e-5446.15Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH28_ARATH2.772e-5448.08Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH29_ARATH3.507e-4942.79Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH31_ARATH2.434e-4240.28Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH32_ARATH4.152e-4241.71Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH4_ARATH1.929e-3940.95Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTH1_SOLLC5.612e-3938.76Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH_BRAOB9.572e-3939.52Xyloglucan endotransglucosylase/hydrolase OS=Brass... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_13G08_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-13G08-M16-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047377 ID=CX047377; Name=CX047377; organism=Citrus sinensis; type=EST; length=821bp
TTTTTTTTTTTTTTTTTAAATAACTATCCCATAAATAATTGAGTTATTGG
TTCATTACTTGATATAAATAAATACAGAAAATTTGCCTTCTTTGTTATTC
ATTTCCTCTCCGATGGGGAGAAGAATACGAAATTAATAACAAAATAAAGG
GGGAAAAAAAGAAGAAGAAGTGATCTCTAATCTCTTTAGTTATTTGCACT
CTGGTGGCATGACTTTAAATCTTGTCGTATCCTTACAGTAAGAGTAGAAC
ATGAGCTTTCTTCTAGACCAATCCAATGCAGCGACTTGCTGCTTTGAAAG
TGTAGTAAATTGTTGTCCATCAACTGGATCCAAGCTTGAAGCACTTCCCT
TCGAGCACGAAGCAGGAGCAGAGGCAGAATTTGATAACACACAGCCAGCC
ATTTCCATTTCAGCCAGTGAAACCACAAATGGTGCATACTTGTAATTAAC
TGGATATTTTCCTCCATGAGTTGCCCACTGTGATCCATCCCATATTGTCA
CATAAACTGACATTGGCTTTGATGGGTATACAGAAGAAAAGGCCCCAGTG
TTTGGAAACTCTCTCACCGGTACATTGTCCACTAGAAATACAATGTGATG
GCTGTTCCAGATAATGCTGTAGTAATGGTGCTGTGCCGTTGGATCGAACC
AGAAGTAAAATTTCTCTTCTCTTCCGGTACTGACACCTCCATTCGCATAT
ATGTTTGTTTGTAGAACCCAGTCATTTCTCTTATCATGACCAAGCAATTC
AATATCAATTTCATCATGGTTGTGCGGATAGCTATCTGCATTAGACAAGT
AGAAGGCAAGTACAACTCCGG
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