CX047363

Overview
NameCX047363
Unique NameCX047363
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length876
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9106 contig Csv1_Contig9106:203..1078. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX047363 vs. ExPASy Swiss-Prot
Match: ASPR_CUCPE (Aspartic proteinase OS=Cucurbita pepo PE=2 SV=1)

HSP 1 Score: 372.089 bits (954), Expect = 2.322e-102
Identity = 180/226 (79.65%), Postives = 193/226 (85.40%), Query Frame = -1
Query:  199 GYCAGGCSAIADSGTSLLAGPTTVITMINHAIGASGVVSQQCKAVVEQYGQTILDLLLFEAHPKKICSQMGLCTFDGKRGVSMGIESVVDESNDKSSGVLNNAMCSACEMAVVWMXXXXXXXXXXXXXXQYVNELCDRMPSPMGESAVDCGKLSSMPIVSFTIGGKVFDLSPEEYILKVGEGPEAQCISGFTAMDVPPPRGPLWILGDVFMGRYHTVFDFGELRVG 876
            G+C GGCSAIADSGTSLLAGPT VITMINHAIGA GVVSQQCKAVV QYGQTI+DLLL EA PKKICSQ+ LCTFDG RGVSMGIESVVDE+  KSS  L++ MCS CEM VVWM               Y+NELCDRMPSPMG+SAVDCG+LSSMP VSFTIGGK+FDL+PEEYILKVGEGP AQCISGFTA D+PPPRGPLWILGDVFMGRYHTVFDFG+LRVG
Sbjct:  283 GFCDGGCSAIADSGTSLLAGPTPVITMINHAIGAKGVVSQQCKAVVAQYGQTIMDLLLSEADPKKICSQINLCTFDGTRGVSMGIESVVDENAGKSSDSLHDGMCSVCEMTVVWMQNQLRQNQTKERIINYINELCDRMPSPMGQSAVDCGQLSSMPTVSFTIGGKIFDLAPEEYILKVGEGPVAQCISGFTAFDIPPPRGPLWILGDVFMGRYHTVFDFGKLRVG 508          
BLAST of CX047363 vs. ExPASy Swiss-Prot
Match: ASPR_HORVU (Phytepsin OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 342.813 bits (878), Expect = 1.508e-93
Identity = 164/227 (72.25%), Postives = 183/227 (80.62%), Query Frame = -1
Query:  196 GYCAGGCSAIADSGTSLLAGPTTVITMINHAIGASGVVSQQCKAVVEQYGQTILDLLLFEAHPKKICSQMGLCTFDGKRGVSMGIESVVDESNDKSSGVLNNAMCSACEMAVVWMXXXXXXXXXXXXXXQYVNELCDRMPSPMGESAVDCGKLSSMPIVSFTIGGKVFDLSPEEYILKVGEGPEAQCISGFTAMDVPPPRGPLWILGDVFMGRYHTVFDFGELRVGF 876
            G+CAGGC+AIADSGTSLLAGPT +IT IN  IGA+GVVSQ+CK +V QYGQ ILDLLL E  PKKICSQ+GLCTFDG RGVS GI SVVD+   KS+G+  + MCSACEMAVVWM               YVN+LC+R+PSPMGESAVDCG L SMP + FTIGGK F L PEEYILKVGEG  AQCISGFTAMD+PPPRGPLWILGDVFMG YHTVFD+G+LR+GF
Sbjct:  278 GFCAGGCAAIADSGTSLLAGPTAIITEINEKIGAAGVVSQECKTIVSQYGQQILDLLLAETQPKKICSQVGLCTFDGTRGVSAGIRSVVDDEPVKSNGLRADPMCSACEMAVVWMQNQLAQNKTQDLILDYVNQLCNRLPSPMGESAVDCGSLGSMPDIEFTIGGKKFALKPEEYILKVGEGAAAQCISGFTAMDIPPPRGPLWILGDVFMGPYHTVFDYGKLRIGF 504          
BLAST of CX047363 vs. ExPASy Swiss-Prot
Match: ASPR1_ORYSJ (Aspartic proteinase oryzasin-1 OS=Oryza sativa subsp. japonica GN=Os05g0567100 PE=2 SV=2)

HSP 1 Score: 340.887 bits (873), Expect = 5.732e-93
Identity = 161/227 (70.93%), Postives = 184/227 (81.06%), Query Frame = -1
Query:  196 GYCAGGCSAIADSGTSLLAGPTTVITMINHAIGASGVVSQQCKAVVEQYGQTILDLLLFEAHPKKICSQMGLCTFDGKRGVSMGIESVVDESNDKSSGVLNNAMCSACEMAVVWMXXXXXXXXXXXXXXQYVNELCDRMPSPMGESAVDCGKLSSMPIVSFTIGGKVFDLSPEEYILKVGEGPEAQCISGFTAMDVPPPRGPLWILGDVFMGRYHTVFDFGELRVGF 876
            G+CA GCSAIADSGTSLLAGPT +IT IN  IGA+GVVSQ+CK VV QYGQ ILDLLL E  P KICSQ+GLCTFDGK GVS GI+SVVD+   +S+G+ +  MC+ACEMAVVWM               Y+N+LCD++PSPMGES+VDCG L+SMP +SFTIGGK F L PEEYILKVGEG  AQCISGFTAMD+PPPRGPLWILGDVFMG YHTVFD+G++RVGF
Sbjct:  279 GFCASGCSAIADSGTSLLAGPTAIITEINEKIGATGVVSQECKTVVSQYGQQILDLLLAETQPSKICSQVGLCTFDGKHGVSAGIKSVVDDEAGESNGLQSGPMCNACEMAVVWMQNQLAQNKTQDLILNYINQLCDKLPSPMGESSVDCGSLASMPEISFTIGGKKFALKPEEYILKVGEGAAAQCISGFTAMDIPPPRGPLWILGDVFMGAYHTVFDYGKMRVGF 505          
BLAST of CX047363 vs. ExPASy Swiss-Prot
Match: CYPR1_CYNCA (Cyprosin (Fragment) OS=Cynara cardunculus GN=CYPRO1 PE=1 SV=2)

HSP 1 Score: 307.76 bits (787), Expect = 5.377e-83
Identity = 147/227 (64.76%), Postives = 178/227 (78.41%), Query Frame = -1
Query:  196 GYCAGGCSAIADSGTSLLAGPTTVITMINHAIGASGVVSQQCKAVVEQYGQTILDLLLFEAHPKKICSQMGLCTFDGKRGVSMGIESVVDESNDKSSGVLNNAMCSACEMAVVWMXXXXXXXXXXXXXXQYVNELCDRMPSPMGESAVDCGKLSSMPIVSFTIGGKVFDLSPEEYILKVGEGPEAQCISGFTAMDVPPPRGPLWILGDVFMGRYHTVFDFGELRVGF 876
            G+CA GC+AIADSGTSLLAG TT++T IN AIGA+GV+SQQCK++V+QYG++++++LL E  P+KICSQM LC+FDG    SM IESVVD+S  KSSG+     C  C   VVWM               YV++LC+R+PSPMGESAVDC  LSSMP ++FT+GGK F+LSPE+Y+LKVGEG  AQCISGFTAMDV PP GPLWILGDVFMG+YHTVFD+G LRVGF
Sbjct:  245 GFCASGCAAIADSGTSLLAGTTTIVTQINQAIGAAGVMSQQCKSLVDQYGKSMIEMLLSEEQPEKICSQMKLCSFDGSHDTSMIIESVVDKSKGKSSGL--PMRCVPCARWVVWMQNQIRQNETEENIINYVDKLCERLPSPMGESAVDCSSLSSMPNIAFTVGGKTFNLSPEQYVLKVGEGATAQCISGFTAMDVAPPHGPLWILGDVFMGQYHTVFDYGNLRVGF 469          
BLAST of CX047363 vs. ExPASy Swiss-Prot
Match: ASPRX_ORYSJ (Aspartic proteinase OS=Oryza sativa subsp. japonica GN=RAP PE=2 SV=2)

HSP 1 Score: 286.96 bits (733), Expect = 9.823e-77
Identity = 133/227 (58.59%), Postives = 168/227 (74.01%), Query Frame = -1
Query:  196 GYCAGGCSAIADSGTSLLAGPTTVITMINHAIGASGVVSQQCKAVVEQYGQTILDLLLFEAHPKKICSQMGLCTFDGKRGVSMGIESVVDESNDKSSGVLNNAMCSACEMAVVWMXXXXXXXXXXXXXXQYVNELCDRMPSPMGESAVDCGKLSSMPIVSFTIGGKVFDLSPEEYILKVGEGPEAQCISGFTAMDVPPPRGPLWILGDVFMGRYHTVFDFGELRVGF 876
            G+CA GC+AI DSGTSLLAGPT ++  +NHAIGA G++S +CK VV +YG+ IL+LL+ +  P+K+CSQ+GLC FDGKR VS GIESVVD+ N  S     +AMCS CEMAVVW+               Y N+LC+R+PSP GES V C ++S MP ++FTI  K F L+PE+YI+K+ +G +  CISGF A D+PPPRGPLWILGDVFMG YHTVFDFG+ R+GF
Sbjct:  271 GFCAKGCAAIVDSGTSLLAGPTAIVAQVNHAIGAEGIISTECKEVVSEYGEMILNLLIAQTDPQKVCSQVGLCMFDGKRSVSNGIESVVDKENLGS-----DAMCSVCEMAVVWIENQLRENKTKELILNYANQLCERLPSPNGESTVSCHQISKMPNLAFTIANKTFILTPEQYIVKLEQGGQTVCISGFMAFDIPPPRGPLWILGDVFMGAYHTVFDFGKDRIGF 492          
BLAST of CX047363 vs. ExPASy Swiss-Prot
Match: CATD_RAT (Cathepsin D OS=Rattus norvegicus GN=Ctsd PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.646e-23
Identity = 49/89 (55.06%), Postives = 66/89 (74.16%), Query Frame = -1
Query:  196 MPSPMGESAVDCGKLSSMPIVSFTIGGKVFDLSPEEYILKVGEGPEAQCISGFTAMDVPPPRGPLWILGDVFMGRYHTVFDFGELRVGF 462
            +P   GE  + C K+SS+PI++F +GG+ ++L PE+YILKV +  +  C+SGF  MD+PPP GPLWILGDVF+G Y+TVFD    RVGF
Sbjct:  313 VPLIQGEYMIPCEKVSSLPIITFKLGGQNYELHPEKYILKVSQAGKTICLSGFMGMDIPPPSGPLWILGDVFIGCYYTVFDREYNRVGF 401          
BLAST of CX047363 vs. ExPASy Swiss-Prot
Match: CATD_HUMAN (Cathepsin D OS=Homo sapiens GN=CTSD PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.646e-23
Identity = 48/89 (53.93%), Postives = 64/89 (71.91%), Query Frame = -1
Query:  196 MPSPMGESAVDCGKLSSMPIVSFTIGGKVFDLSPEEYILKVGEGPEAQCISGFTAMDVPPPRGPLWILGDVFMGRYHTVFDFGELRVGF 462
            +P   GE  + C K+S++P ++  +GGK + LSPE+Y LKV +  +  C+SGF  MD+PPP GPLWILGDVF+GRY+TVFD    RVGF
Sbjct:  318 VPLIQGEYMIPCEKVSTLPAITLKLGGKGYKLSPEDYTLKVSQAGKTLCLSGFMGMDIPPPSGPLWILGDVFIGRYYTVFDRDNNRVGF 406          
BLAST of CX047363 vs. ExPASy Swiss-Prot
Match: CATD_MOUSE (Cathepsin D OS=Mus musculus GN=Ctsd PE=1 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 2.149e-23
Identity = 49/89 (55.06%), Postives = 64/89 (71.91%), Query Frame = -1
Query:  196 MPSPMGESAVDCGKLSSMPIVSFTIGGKVFDLSPEEYILKVGEGPEAQCISGFTAMDVPPPRGPLWILGDVFMGRYHTVFDFGELRVGF 462
            +P   GE  + C K+SS+P V   +GGK ++L P++YILKV +G +  C+SGF  MD+PPP GPLWILGDVF+G Y+TVFD    RVGF
Sbjct:  316 VPLIQGEYMIPCEKVSSLPTVYLKLGGKNYELHPDKYILKVSQGGKTICLSGFMGMDIPPPSGPLWILGDVFIGSYYTVFDRDNNRVGF 404          
BLAST of CX047363 vs. ExPASy Swiss-Prot
Match: CATD_CHIHA (Cathepsin D OS=Chionodraco hamatus GN=ctsd PE=1 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 2.149e-23
Identity = 48/88 (54.55%), Postives = 65/88 (73.86%), Query Frame = -1
Query:  196 PSPMGESAVDCGKLSSMPIVSFTIGGKVFDLSPEEYILKVGEGPEAQCISGFTAMDVPPPRGPLWILGDVFMGRYHTVFDFGELRVGF 459
            P   GE  V+C  + S+P++SFT+GG+V+ L+ E+YILKV +  +  C+SGF  +D+P P GPLWILGDVFMG+Y+TVFD    RVGF
Sbjct:  305 PLIQGEYMVNCDTVPSLPVISFTVGGQVYTLTGEQYILKVTQAGKTMCLSGFMGLDIPAPAGPLWILGDVFMGQYYTVFDRDANRVGF 392          
BLAST of CX047363 vs. ExPASy Swiss-Prot
Match: CATD_BOVIN (Cathepsin D OS=Bos taurus GN=CTSD PE=1 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 8.167e-23
Identity = 49/88 (55.68%), Postives = 63/88 (71.59%), Query Frame = -1
Query:  199 MPSPMGESAVDCGKLSSMPIVSFTIGGKVFDLSPEEYILKVGEGPEAQCISGFTAMDVPPPRGPLWILGDVFMGRYHTVFDFGELRVG 462
            +P   GE  + C K+SS+P V+  +GGK + LSPE+Y LKV +     C+SGF  MD+PPP GPLWILGDVF+GRY+TVFD  + RVG
Sbjct:  296 VPLIQGEYMIPCEKVSSLPEVTVKLGGKDYALSPEDYALKVSQAETTVCLSGFMGMDIPPPGGPLWILGDVFIGRYYTVFDRDQNRVG 383          
The following BLAST results are available for this feature:
BLAST of CX047363 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
ASPR_CUCPE2.322e-10279.65Aspartic proteinase OS=Cucurbita pepo PE=2 SV=1[more]
ASPR_HORVU1.508e-9372.25Phytepsin OS=Hordeum vulgare PE=1 SV=1[more]
ASPR1_ORYSJ5.732e-9370.93Aspartic proteinase oryzasin-1 OS=Oryza sativa sub... [more]
CYPR1_CYNCA5.377e-8364.76Cyprosin (Fragment) OS=Cynara cardunculus GN=CYPRO... [more]
ASPRX_ORYSJ9.823e-7758.59Aspartic proteinase OS=Oryza sativa subsp. japonic... [more]
CATD_RAT1.646e-2355.06Cathepsin D OS=Rattus norvegicus GN=Ctsd PE=1 SV=1[more]
CATD_HUMAN1.646e-2353.93Cathepsin D OS=Homo sapiens GN=CTSD PE=1 SV=1[more]
CATD_MOUSE2.149e-2355.06Cathepsin D OS=Mus musculus GN=Ctsd PE=1 SV=1[more]
CATD_CHIHA2.149e-2354.55Cathepsin D OS=Chionodraco hamatus GN=ctsd PE=1 SV... [more]
CATD_BOVIN8.167e-2355.68Cathepsin D OS=Bos taurus GN=CTSD PE=1 SV=2[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS09_13F12_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-13F12-K24-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047363 ID=CX047363; Name=CX047363; organism=Citrus sinensis; type=EST; length=876bp
TTTTTTTGAAAGAAAAAATATTTACAAGCAAACATGAAATCGTTTTATAG
CCATCACGTCTGAGGCTAACGGCTTCACATGATTTTATCACCAACTCCAT
TATAAGGGTACATAATATATATCTTAGCGAATAGAAGACATGAAGGATTA
TATCGAAAGAGAAGCGGCCTAAAGATCCATTTATGCAGCCTCAGCAAATC
CGACTCTGAGCTCACCGAAATCAAAGACTGTATGGTAGCGACCCATGAAG
ACGTCTCCCAAGATCCAGAGAGGACCACGGGGAGGGGGAACATCCATAGC
AGTAAATCCACTAATGCACTGAGCCTCAGGACCTTCGCCCACCTTCAGAA
TGTACTCCTCTGGAGAGAGGTCAAACACTTTGCCACCAATAGTGAACGAA
ACAATAGGCATGGAAGAGAGCTTTCCACAATCAACTGCTGATTCTCCCAT
TGGGCTTGGCATTCGGTCACAAAGCTCATTGACATATTGCAAAATGTTTT
CTTGTGTTTGATTCTGCTGAAGCTGGTTTTGCATCCATACAACTGCCATC
TCACAAGCAGAGCACATAGCATTATTAAGAACACCGGAAGACTTGTCGTT
GCTCTCATCCACCACACTCTCGATGCCCATACTAACACCACGTTTTCCAT
CAAAGGTGCACAATCCCATTTGGGAGCAAATTTTCTTAGGATGTGCCTCA
AACAGAAGAAGATCCAAAATTGTTTGTCCGTATTGCTCAACAACTGCCTT
GCATTGTTGGCTAACAACTCCAGAGGCTCCAATAGCATGATTTATCATGG
TAATCACAGTCGTTGGACCTGCCAACAAAGAAGTACCAGAATCTGCAATT
GCTGAACAACCTCCAGCACAATATCC
back to top