FC921967

Overview
NameFC921967
Unique NameFC921967
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length296
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9549 contig Csv1_Contig9549:483..778. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921967 vs. ExPASy Swiss-Prot
Match: CTNS_ARATH (Cystinosin homolog OS=Arabidopsis thaliana GN=At5g40670 PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 1.282e-34
Identity = 68/98 (69.39%), Postives = 82/98 (83.67%), Query Frame = 2
Query:    2 GRDQMIPVAANDVAFSMHAVLLTIITLFQIAIYERGVPKVSKISMAIVSVVWLAAAVCFFVALPNHSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRK 295
            G  +MIPVAANDVAFS+HAV++T +TLFQI IYERG  KVS++++ IV VVW  AA+CFF+ALP HSWLWLI+ FN+IQV MT +KYIPQA MNF RK
Sbjct:   81 GDKEMIPVAANDVAFSIHAVVMTAVTLFQIFIYERGPQKVSRLAIGIVVVVWGFAAICFFIALPTHSWLWLISIFNSIQVFMTCVKYIPQAKMNFTRK 178          
BLAST of FC921967 vs. ExPASy Swiss-Prot
Match: CTNS_DICDI (Cystinosin homolog OS=Dictyostelium discoideum GN=ctns PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.749e-18
Identity = 39/94 (41.49%), Postives = 65/94 (69.15%), Query Frame = 2
Query:   17 IPVAANDVAFSMHAVLLTIITLFQIAIYERGVPKVSKISMAIVSVVWLAAAVCFFVALPN-HSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRK 295
            IPV  +D+AF++H  +LT IT+ Q  IY+RG  K SK+ + I +++W++  V   +   N  +WLW+IN+++ +++ +T IKYIPQA +NF+ K
Sbjct:   79 IPVQQSDIAFAIHGFVLTAITIIQCFIYDRGNQKNSKLGIGIATLIWVSLIVMTILGFSNVFTWLWVINYYSYVKLFITFIKYIPQAYLNFKNK 172          
BLAST of FC921967 vs. ExPASy Swiss-Prot
Match: CTNS_MOUSE (Cystinosin OS=Mus musculus GN=Ctns PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.514e-14
Identity = 42/93 (45.16%), Postives = 57/93 (61.29%), Query Frame = 2
Query:   20 PVAANDVAFSMHAVLLTIITLFQIAIYERGVPKVSKISMAIVSVVWLAAAVCFFVALPN-HSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRK 295
            PV +ND  FS+HAV LT+I + Q  +YERG  +VS  S+  + + WL   V   VA     +WL  +  F+ I++I+TLIKY PQA MNF  K
Sbjct:  200 PVDSNDAFFSLHAVALTLIVILQCCLYERGNQRVSWPSIGFLVLAWLFVLVTMIVAAVGITTWLQFLFCFSYIKLIITLIKYFPQAYMNFYYK 292          
BLAST of FC921967 vs. ExPASy Swiss-Prot
Match: CTNS_HUMAN (Cystinosin OS=Homo sapiens GN=CTNS PE=1 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 4.289e-14
Identity = 41/93 (44.09%), Postives = 59/93 (63.44%), Query Frame = 2
Query:   20 PVAANDVAFSMHAVLLTIITLFQIAIYERGVPKVSKISMAIVSVVWLAAAVCFFVALPN-HSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRK 295
            PV +NDV FS+HAV+LT+I + Q  +YERG  +VS  ++  + + WL A V   VA     +WL  +  F+ I++ +TL+KY PQA MNF  K
Sbjct:  200 PVNSNDVFFSLHAVVLTLIIIVQCCLYERGGQRVSWPAIGFLVLAWLFAFVTMIVAAVGVTTWLQFLFCFSYIKLAVTLVKYFPQAYMNFYYK 292          
BLAST of FC921967 vs. ExPASy Swiss-Prot
Match: CTNS_BOVIN (Cystinosin OS=Bos taurus GN=CTNS PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.316e-14
Identity = 37/93 (39.78%), Postives = 60/93 (64.52%), Query Frame = 2
Query:   20 PVAANDVAFSMHAVLLTIITLFQIAIYERGVPKVSKISMAIVSVVWLAAAVCFFV-ALPNHSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRK 295
            PV +NDV FS+HAV LT++ + Q  +YERG  +VS ++++ + + WL   +   + A+   +WL  +  F+ I++ +TL+KY PQA MNF  K
Sbjct:  200 PVDSNDVFFSLHAVALTLVVIVQCLLYERGSQRVSWLAISFLVLSWLFTLIALIMAAVGATTWLQFLFCFSYIKLAVTLVKYFPQAYMNFHYK 292          
BLAST of FC921967 vs. ExPASy Swiss-Prot
Match: CTNS_DROME (Cystinosin homolog OS=Drosophila melanogaster GN=CG17119 PE=1 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 6.848e-12
Identity = 37/95 (38.95%), Postives = 57/95 (60.00%), Query Frame = 2
Query:   20 PVAANDVAFSMHAVLLTIITLFQIAIYERGVPKVSKISMAIVSVVWLAAAVCFFVALPNHS---WLWLINFFNAIQVIMTLIKYIPQAIMNFRRK 295
            PV  NDV FS+HA+  T IT+ Q   Y+R   +VS I+  I+++   A  V     L   S   WL  + + + +++ +T+IKY+PQA+MN+RRK
Sbjct:  205 PVMLNDVVFSLHAMFATCITILQCFFYQRAQQRVSFIAYGILAI--FAVVVVVSAGLAGGSVIHWLDFLYYCSYVKLTITIIKYVPQALMNYRRK 297          
The following BLAST results are available for this feature:
BLAST of FC921967 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
CTNS_ARATH1.282e-3469.39Cystinosin homolog OS=Arabidopsis thaliana GN=At5g... [more]
CTNS_DICDI3.749e-1841.49Cystinosin homolog OS=Dictyostelium discoideum GN=... [more]
CTNS_MOUSE2.514e-1445.16Cystinosin OS=Mus musculus GN=Ctns PE=1 SV=1[more]
CTNS_HUMAN4.289e-1444.09Cystinosin OS=Homo sapiens GN=CTNS PE=1 SV=2[more]
CTNS_BOVIN7.316e-1439.78Cystinosin OS=Bos taurus GN=CTNS PE=2 SV=1[more]
CTNS_DROME6.848e-1238.95Cystinosin homolog OS=Drosophila melanogaster GN=C... [more]
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Properties
Property NameValue
Genbank descriptionC06056A08T7 RindPdigS Citrus sinensis cDNA clone C06056A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921967 ID=FC921967; Name=FC921967; organism=Citrus sinensis; type=EST; length=296bp
CGGCCGCGATCAGATGATTCCCGTGGCAGCAAATGATGTCGCGTTTTCAA
TGCATGCTGTTCTCTTGACAATAATTACCCTGTTCCAAATTGCAATCTAT
GAACGTGGTGTTCCCAAAGTATCTAAGATTTCTATGGCAATTGTCTCTGT
TGTTTGGTTGGCTGCCGCAGTTTGTTTCTTCGTAGCATTGCCAAACCATT
CTTGGCTTTGGCTCATCAACTTCTTTAACGCTATTCAAGTTATTATGACA
CTCATCAAGTATATTCCACAGGCCATCATGAACTTTAGGCGAAAGA
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