CX047359

Overview
NameCX047359
Unique NameCX047359
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length917
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10438 contig Csv1_Contig10438:618..1534. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX047359 vs. ExPASy Swiss-Prot
Match: AMAB2_BACST (N-carbamoyl-L-amino acid hydrolase OS=Bacillus stearothermophilus GN=amaB PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 6.684e-39
Identity = 102/276 (36.96%), Postives = 148/276 (53.62%), Query Frame = 1
Query:    1 LGSRLLAGIESLAKDLTSTVDGQNISFLDAARSAGYAKEPNDLSSVFLKKGSYSAFVELHIEQGPILEEEGTSIGIVTAIAAPASIKVDFEGNGGHAGAVLMPNRNDXXXXXXXXXXXVEKHVLESGSIDTVGTVGILELHPGAINSIPSKSHLEIDTRDIDEKRRNSVIEKIHQSAITIAKNRGVTLSEFKIVNQDPPALSEKSIIEAVEAASKELNLTHKFMISRAYHDSLFMARVSPMGMIFIPCFKGYSHKPDEYASGHDMENGVKVLALTL 828
            +GSR +AG  +L  +     D + IS  +A + AG   +P+ L     K G+  A+VELHIEQG +LEE G  +GIVT IA    +K   EG   HAGA  M  R D           +E+    +G+  TVGTVG L ++PG IN IP +    +D RD+  + R+ V + I   A TIAK R V ++  ++  + PP L    +  A EAA ++L     ++ S A HDS+ +A + P+GMIF+    G SH P E+++  D   G +VL  T+
Sbjct:  134 IGSRAMAG--TLPPEALECRDAEGISLAEAMKQAGL--DPDRLPQAARKPGTVKAYVELHIEQGRVLEETGLPVGIVTGIAGLIWVKFTIEGKAEHAGATPMSLRRDPMAAAAQIIIVIEEEARRTGT--TVGTVGQLHVYPGGINVIPERVEFVLDLRDLKAEVRDQVWKAIAVRAETIAKERNVRVTTERL-QEMPPVLCSDEVKRAAEAACQKLGYPSFWLPSGAAHDSVQLAPICPIGMIFVRSQDGVSHSPAEWSTKEDCAAGAEVLYHTV 402          
BLAST of CX047359 vs. ExPASy Swiss-Prot
Match: HYUC_PSESN (Hydantoin utilization protein C OS=Pseudomonas sp. (strain NS671) GN=hyuC PE=1 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 2.540e-38
Identity = 93/271 (34.32%), Postives = 141/271 (52.03%), Query Frame = 1
Query:    4 GSRLLAGIESLAKDLTSTVDGQNISFLDAARSAGYAKEPNDLSSVFLKKGSYSAFVELHIEQGPILEEEGTSIGIVTAIAAPASIKVDFEGNGGHAGAVLMPNRNDXXXXXXXXXXXVEKHVLESGSIDTVGTVGILELHPGAINSIPSKSHLEIDTRDIDEKRRNSVIEKIHQSAITIAKNRGVTLSEFKIVNQDPPALSEKSIIEAVEAASKELNLTHKFMISRAYHDSLFMARVSPMGMIFIPCFKGYSHKPDEYASGHDMENGVKVL 816
            GSR + G   +  +    VD  N++  +A ++ G+  +P+       + G    + E+HIEQGP LE+    IGIV+ IA P+  KV   G  GHAG V M  R D           VE   +   +  TVGTVG +   PG  N IP      +D RDI+ +RRN +IEKI +    ++  RG+     K +   P   SE ++I +++ + KEL +    ++S A HD++F+A ++ +GM+F+ C  G SH P E+A   D+  G KVL
Sbjct:  139 GSRGMVG--KVKPEDLQKVDDNNVTRYEALKTFGFGIDPDFTHQSIREIGDIKHYFEMHIEQGPYLEKNNYPIGIVSGIAGPSWFKVRLVGEAGHAGTVPMSLRKDPLVGAAEVIKEVETLCMNDPNAPTVGTVGRIAAFPGGSNIIPESVEFTLDIRDIELERRNKIIEKIEEKIKLVSNTRGLEYQIEKNMAAVPVKCSE-NLINSLKQSCKELEIDAPIIVSGAGHDAMFLAEITEIGMVFVRCRNGISHSPKEWAEIDDILTGTKVL 406          
BLAST of CX047359 vs. ExPASy Swiss-Prot
Match: AMAB1_BACST (N-carbamoyl-L-amino acid hydrolase OS=Bacillus stearothermophilus GN=amaB PE=3 SV=2)

HSP 1 Score: 154.836 bits (390), Expect = 6.256e-37
Identity = 100/276 (36.23%), Postives = 146/276 (52.90%), Query Frame = 1
Query:    1 LGSRLLAGIESLAKDLTSTVDGQNISFLDAARSAGYAKEPNDLSSVFLKKGSYSAFVELHIEQGPILEEEGTSIGIVTAIAAPASIKVDFEGNGGHAGAVLMPNRNDXXXXXXXXXXXVEKHVLESGSIDTVGTVGILELHPGAINSIPSKSHLEIDTRDIDEKRRNSVIEKIHQSAITIAKNRGVTLSEFKIVNQDPPALSEKSIIEAVEAASKELNLTHKFMISRAYHDSLFMARVSPMGMIFIPCFKGYSHKPDEYASGHDMENGVKVLALTL 828
            +GSR +AG  +L  +     D + IS  +A + AG   +P+ L     K G+  A+VELHIEQG +LEE G  +GIVT IA    +K    G   HAGA  M  R D           +E+    +G+  TVGTVG L ++PG IN IP +    +D RD+  + R+ V + I   A TIAK R V L+  ++  +  P L  + + +A E A K+L     ++ S A HD + +A + P+GMIF+    G SH P E+++  D   G +VL  T+
Sbjct:  134 IGSRAMAG--TLPPEALECRDAEGISLAEAMKQAGL--DPDRLPQAARKPGTVKAYVELHIEQGRVLEEAGLPVGIVTGIAGLIWVKFTIAGPAEHAGATPMSLRRDPMAAAAQIIIVIEEEARRTGT--TVGTVGQLHVYPGGINVIPERVEFVLDLRDLKAEVRDQVWKAIAVRAETIAKERNVRLTTERL-QEMAPVLCSEVVKQAAERACKQLGYPPFWLPSGAAHDGVQLAPICPIGMIFVRSQDGVSHSPAEWSTKEDCAVGAEVLYHTV 402          
BLAST of CX047359 vs. ExPASy Swiss-Prot
Match: Y588_HAEIN (Uncharacterized hydrolase HI0588 OS=Haemophilus influenzae GN=HI0588 PE=1 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.820e-36
Identity = 92/272 (33.82%), Postives = 144/272 (52.94%), Query Frame = 1
Query:    1 LGSRLLAGIESLAKDLTSTVDGQNISFLDAARSAGYAKEPNDLSSVFLKKGSYSAFVELHIEQGPILEEEGTSIGIVTAIAAPASIKVDFEGNGGHAGAVLMPNRNDXXXXXXXXXXXVEKHVLESGSIDTVGTVGILELHPGAINSIPSKSHLEIDTRDIDEKRRNSVIEKIHQSAITIAKNRGVTLSEFKIVNQDPPALSEKSIIEAVEAASKELNLTHKFMISRAYHDSLFMARVSPMGMIFIPCFKGYSHKPDEYASGHDMENGVKVL 816
            LGS+++ GI +  K L+S  D Q     +A    G     N ++        +  F ELHIEQGP LE EG +IG+VT IAAP    V  +G   H+GA  M  R+D           +E+  +++G   TV TVG +   PG +N +P    L +D R    + R+SV E + +    +++ RG+ L E +++++D P +  ++++  +   +  L  +++ M S A HD++ MA + P GMIFIP   G SH P E+    D+E G+KVL
Sbjct:  134 LGSKVMCGIVNQEK-LSSLRDKQGKGLSEAMAEVGM--NFNLVNQAKRDAKEFKCFFELHIEQGPRLENEGKTIGVVTGIAAPIRAIVKIKGQADHSGATAMHYRHDALLGGSELSLAIERAAIQAGH-STVATVGNITAKPGVMNVVPGYCELLVDIRGTHVQARDSVFELLQEEISKVSEKRGL-LIELQLISKDNPIILPENMVNQIAETAHSLGYSYEIMPSGAGHDAMHMATLCPTGMIFIPSHLGISHNPLEFTDWKDIEAGIKVL 400          
BLAST of CX047359 vs. ExPASy Swiss-Prot
Match: ALLC_ECOLI (Allantoate amidohydrolase OS=Escherichia coli (strain K12) GN=allC PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.598e-24
Identity = 82/275 (29.82%), Postives = 122/275 (44.36%), Query Frame = 1
Query:    4 GSRLLAGIESLAKDLTSTVDGQNISFLDAARSAGYAKEPNDLSSVFLKKGSYSAFVELHIEQGPILEEEGTSIGIVTAIAAPASIKVDFEGNGGHAGAVLMPNRNDXXXXXXXXXXXVEKHVLESGSIDTVGTVGILELHPGAINSIPSKSHLEIDTRDIDEKRRNSVIEKIHQSAITIAKNRGVTLSEFKIVNQDPPALSEKSIIEAVEAASKELNLTHKFMISRAYHDSLFMARVSPMGMIFIPCFKGYSHKPDEYASGHDMENGVKVLALTL 828
            GS+ + G+ +   D+ +  D +  SF+DA ++ G+   PN   +    +    AFVELHIEQG +LE  G SIG+V AI       V   G   HAG   M  R D             +     G    V T G +E  P  +N +P K+   ID R  D        +++      I     + +     ++++P  ++++ +    E   +E  L ++ M S A HD+   A   P  MIFIP   G SH P E  +  D+  GVK LAL L
Sbjct:  137 GSKNIFGLAN-PDDVRNICDAKGNSFVDAMKACGFTL-PN---APLTPRQDIKAFVELHIEQGCVLESNGQSIGVVNAIVGQRRYTVTLNGESNHAGTTPMGYRRDTVYAFSRICHQSVEKAKRMGD-PLVLTFGKVEPRPNTVNVVPGKTTFTIDCRHTDAAVLRDFTQQLENDMRAICDEMDIGIDIDLWMDEEPVPMNKELVATLTELCERE-KLNYRVMHSGAGHDAQIFAPRVPTCMIFIPSINGISHNPAERTNITDLAEGVKTLALML 404          
BLAST of CX047359 vs. ExPASy Swiss-Prot
Match: AAH_ARATH (Allantoate deiminase, chloroplastic OS=Arabidopsis thaliana GN=AAH PE=2 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 1.496e-22
Identity = 84/289 (29.07%), Postives = 129/289 (44.64%), Query Frame = 1
Query:    1 LGSRLLAGIESLAKDLTSTVDGQNISFLDAARSAGYAKEPNDLSSVFLKKGSYSAFVELHIEQGPILEEEGTSIGIVTAIAAPASIKVDFEGNGGHAGAVLMPNRNDXXXXXXXXXXXVE-----------------KHVLESGSIDTVGTVGILELHPGAINSIPSKSHLEIDTRDIDEKRRNSVIEKIHQSAITIAKNRGVTLS-----EFKIVNQDPP-ALSEKSIIE-AVEAASKELNLTHKFMISRAYHDSLFMARVSPMGMIFIPCFKGYSHKPDEYASGHDM 795
            LGS  LAGI  +++      D   IS  DA +         +L  +     S   +VE+HIEQGP+LE  G  +G+V  IA    +KV  +G+ GHAG V M  R D           +E                 +  +ES +   V TVG +   P A N IP +    +D R ID+  R +++  +      I   R +  S     +   V  DP  +L  KS  + A++  + E+      ++S A HD++ MA ++ +GM+F+ C  G SH P E+    D+
Sbjct:  224 LGSAALAGIMPVSR--LEVTDKSGISVQDALKENSIDITDENLMQLKYDPASVWGYVEVHIEQGPVLEWVGYPLGVVKGIAGQTRLKVTVKGSQGHAGTVPMSMRQDPMTGAAELIVLLESVCKNPKDYLSCNVQCNEDTVESLANSLVCTVGEISTWPSASNVIPGQVTFTVDLRTIDDVGRKAILHDLSTRMYQICDKRSLLCSIERKHDADAVMSDPQLSLQLKSAAQSALKKMTGEVQDEVPVLMSGAGHDAMAMAHLTKVGMLFVRCRGGISHSPAEHVLDDDV 510          
BLAST of CX047359 vs. ExPASy Swiss-Prot
Match: ALLC_BACSU (Allantoate amidohydrolase OS=Bacillus subtilis GN=pucF PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 6.285e-21
Identity = 83/259 (32.05%), Postives = 114/259 (44.02%), Query Frame = 1
Query:  109 AKEPNDLSSVFLK---------KGSY--------SAFVELHIEQGPILEEEGTSIGIVTAIAAPASIKVDFEGNGGHAGAVLMPNRNDXXXXXXXXXXXVEKHVLESGSI--DTVGTVGILELHPGAINSIPSKSHLEIDTRDIDEKRRNSVIEKIHQSAIT----IAKNRGVTLSEFKIVNQDPPALSEKSIIEAVEAASKELNLTHKFMISRAYHDSLFMARVSPMGMIFIPCFKGYSHKPDEYASGHDMENGVKVL 816
            AKEP D S V L+         KG +        SAFVELHIEQG  LE  G  +GIVT+IA      V  EG   HAG   M  R D           + + +L S  +  +   T G +   P   N IP +    ID R     +   V+E+ HQ  +     I   +G+     + +  +P  + E+    A E A  E   + + M+S A HD+  + R  P  M+F+P   G SH P EY S   +E GV+ L
Sbjct:  153 AKEPRDESGVSLQTAMHESGFGKGVFQSAYRTDISAFVELHIEQGKTLEMSGRDLGIVTSIAGQRRYLVTLEGECNHAGTTSMKWRKD---PLAASSRIIHELLLRSDELPDELRLTCGKITAEPNVANVIPGRVQFSIDIR----HQHQHVLEQFHQDMVALINGICLQKGIRAVIDEYMRIEPVPMDERLKAAAFETA-LENGFSCEEMVSGAGHDAQMIGRRYPACMLFVPSRGGVSHSPKEYTSARQLEIGVRAL 403          
The following BLAST results are available for this feature:
BLAST of CX047359 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
AMAB2_BACST6.684e-3936.96N-carbamoyl-L-amino acid hydrolase OS=Bacillus ste... [more]
HYUC_PSESN2.540e-3834.32Hydantoin utilization protein C OS=Pseudomonas sp.... [more]
AMAB1_BACST6.256e-3736.23N-carbamoyl-L-amino acid hydrolase OS=Bacillus ste... [more]
Y588_HAEIN1.820e-3633.82Uncharacterized hydrolase HI0588 OS=Haemophilus in... [more]
ALLC_ECOLI1.598e-2429.82Allantoate amidohydrolase OS=Escherichia coli (str... [more]
AAH_ARATH1.496e-2229.07Allantoate deiminase, chloroplastic OS=Arabidopsis... [more]
ALLC_BACSU6.285e-2132.05Allantoate amidohydrolase OS=Bacillus subtilis GN=... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS09_13F10_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-13F10-K20-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047359 ID=CX047359; Name=CX047359; organism=Citrus sinensis; type=EST; length=917bp
TTGGGAAGTCGCTTATTGGCAGGAATTGAGTCACTTGCAAAAGATCTGAC
ATCAACAGTTGATGGTCAAAATATATCCTTTTTAGATGCTGCAAGATCTG
CTGGATACGCAAAAGAGCCCAATGACCTATCCAGTGTGTTTTTGAAGAAA
GGAAGTTACTCTGCTTTTGTTGAATTGCATATAGAGCAGGGACCCATTCT
GGAGGAGGAAGGTACATCAATTGGTATAGTGACTGCGATTGCAGCTCCTG
CAAGTATAAAAGTAGATTTTGAAGGCAATGGAGGGCATGCTGGTGCTGTC
TTGATGCCGAATAGGAACGATGCCGGTCTGGCTGCTGCAGAACTAGCGCT
AGCTGTCGAGAAACATGTTCTAGAATCTGGATCCATTGATACCGTTGGTA
CAGTCGGTATTCTGGAGCTGCATCCTGGTGCAATCAACAGCATACCAAGC
AAGTCACACTTAGAAATTGACACACGAGACATTGATGAAAAGCGAAGAAA
TAGTGTGATTGAAAAAATCCATCAGTCTGCAATTACAATTGCTAAAAATC
GTGGGGTCACTCTATCTGAATTCAAAATCGTAAATCAGGATCCACCAGCT
CTTTCTGAGAAATCAATAATTGAGGCAGTGGAAGCAGCGTCAAAAGAACT
TAATTTAACACATAAGTTTATGATAAGCAGAGCTTACCATGATTCACTCT
TTATGGCCAGGGTATCGCCAATGGGCATGATATTCATTCCATGTTTCAAA
GGTTATAGCCACAAGCCTGATGAATATGCCTCTGGCCATGACATGGAAAA
TGGGGTAAAGGTATTAGCATTGACCCTTGCCAAGTTGTCCCTGCAATGAT
CACTGCTTGTAATTCTTGTCAACCAGCTACTTAAGATTTCATACAGGGTT
ATACATTCTCCTTTCTG
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