CX047316

Overview
NameCX047316
Unique NameCX047316
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length726
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1272 contig Csv1_Contig1272:18..743. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX047316 vs. ExPASy Swiss-Prot
Match: PM1_SOYBN (18 kDa seed maturation protein OS=Glycine max GN=GMPM1 PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.364e-35
Identity = 78/150 (52.00%), Postives = 99/150 (66.00%), Query Frame = 3
Query:   54 QSMKESXXXXXXXXXXGMEKTKATAQEKVDKMKAHDPVEKEMATEKKEERRMQAELEKQEAREHNAAAKQATGGLGY---------TTADSYSHSTTGMHGRPTGGQQMSALAGHGTGQPAGQMTEGVVGSHPMGVNTGTGHN-PAHNTR 473
            +S+KE+          GMEKTKAT QEK ++M A DPV+KE+AT+KKE +  QAEL+KQ AR+HN AAKQ+    G+         T   + ++STTG +G+P G  Q SA+ GHGTGQP G +TEGVVGSHP+G N G G    AHNTR
Sbjct:    9 ESIKETATNIGASAKAGMEKTKATVQEKAERMTARDPVQKELATQKKEAKMNQAELDKQAARQHNTAAKQSATTAGHMGHGHHTTGTGTGTATYSTTGEYGQPMGAHQTSAMPGHGTGQPTGHVTEGVVGSHPIGTNRGPGGTATAHNTR 158          
BLAST of CX047316 vs. ExPASy Swiss-Prot
Match: LEA11_HELAN (11 kDa late embryogenesis abundant protein OS=Helianthus annuus PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.881e-19
Identity = 52/96 (54.17%), Postives = 65/96 (67.71%), Query Frame = 3
Query:   57 SMKESXXXXXXXXXXGMEKTKATAQEKVDKMKAHDPVEKEMATEKKEERRMQAELEKQEAREHNAAAKQATG-GLGYTTADSYSHSTTGMHGRPTG 341
            S KE+          GMEKTKA+ QEK +KM AHDP++KEMA EKKEER+ +AE EKQ A+EHNAA KQ TG G G     ++S++TT + G  TG
Sbjct:   10 SAKETAANVAASAKAGMEKTKASLQEKGEKMTAHDPMQKEMAREKKEERKHEAEYEKQAAKEHNAAQKQTTGIGTG-----THSYTTTNVTGHRTG 100          
BLAST of CX047316 vs. ExPASy Swiss-Prot
Match: LEA13_GOSHI (Late embryogenesis abundant protein D-113 OS=Gossypium hirsutum PE=2 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 1.160e-18
Identity = 59/122 (48.36%), Postives = 70/122 (57.38%), Query Frame = 3
Query:   51 MQSMKESXXXXXXXXXXGMEKTKATAQEKVDKMKAHDPVEKEMATEKKEERRMQAELEKQEAREHNAAAKQ----ATGGLGYTTADSYSHSTTGMHGRPTGGQQMSALAGHGTGQPAGQMTE 404
            MQSMK++          GMEK KA+ QEKVD+MK  DP EKEMA E+KEER+  AEL KQEAR HNA A        GG GYTTA  Y+   TG +G  TGG         G+G   G+  +
Sbjct:    1 MQSMKDAAASAKA----GMEKAKASMQEKVDQMKTRDPNEKEMARERKEERQEDAELRKQEARHHNATAGHVGGGGIGGTGYTTA-GYNIGDTGGYG-GTGGHDNRGYPTAGSGYDTGRQDD 116          
BLAST of CX047316 vs. ExPASy Swiss-Prot
Match: LE25_SOLLC (Protein LE25 OS=Solanum lycopersicum GN=LE25 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.052e-11
Identity = 38/74 (51.35%), Postives = 50/74 (67.57%), Query Frame = 3
Query:  102 GMEKTKATAQEKVDKMKAHDPVEKEMATEKKEERRMQAELEKQEAREHNAAAKQ--ATGGLGYTTADSYSHSTT 317
            GMEKTKA  QEK ++M   DP++KEMATEKKE+R   AE+ K++A+  +AA KQ  AT G G T   +  + TT
Sbjct:   14 GMEKTKANVQEKAERMTTRDPLKKEMATEKKEDRVAAAEMGKRDAKAQHAAEKQGAATTGTGTTGYGATGNHTT 87          
The following BLAST results are available for this feature:
BLAST of CX047316 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
PM1_SOYBN1.364e-3552.0018 kDa seed maturation protein OS=Glycine max GN=G... [more]
LEA11_HELAN8.881e-1954.1711 kDa late embryogenesis abundant protein OS=Heli... [more]
LEA13_GOSHI1.160e-1848.36Late embryogenesis abundant protein D-113 OS=Gossy... [more]
LE25_SOLLC1.052e-1151.35Protein LE25 OS=Solanum lycopersicum GN=LE25 PE=2 ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS09_13D09_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-13D09-G18-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047316 ID=CX047316; Name=CX047316; organism=Citrus sinensis; type=EST; length=726bp
GGTTAGCATAATTGCATTCAAGGCAAAGAAGAAATTTGAAGAAAGTGAAA
ATGCAGTCCATGAAGGAATCGGCAGCTAACGTTGCGGCCTCTGCCAAGGC
TGGCATGGAGAAAACTAAAGCCACGGCCCAAGAGAAGGTTGATAAAATGA
AAGCGCATGATCCAGTAGAGAAAGAAATGGCGACGGAGAAGAAAGAGGAA
AGAAGAATGCAAGCGGAGCTCGAGAAGCAGGAGGCTCGTGAGCACAATGC
GGCGGCAAAGCAAGCGACGGGTGGGCTTGGCTATACAACAGCTGACAGCT
ACTCGCACTCGACCACTGGGATGCACGGTCGTCCGACTGGAGGCCAGCAG
ATGTCAGCCCTTGCCGGTCATGGAACAGGGCAACCGGCTGGGCAGATGAC
TGAAGGGGTGGTGGGGTCGCATCCGATGGGAGTCAATACTGGGACGGGCC
ACAACCCCGCACATAACACGCGAGTTGGGGGCGGTGGGGGAGCCACTGGA
TATGGCACTGGTGGTTCTTACAATTAGATTTTTTTTATGAAGTTGGCCTT
TGTGTTTTATGTAATAAGGGTCAATTTGTAAGAATGAGGTTGCATGATCC
TCTAGCGTACTTTCTGTTTGGTTTCGTGTTTATCTGGCTGGCAGCGTATT
ATCATGTGATGTAATGTATGATGTGTTGTTGCCCTTCTATAATATATGTT
GAATAAAAAGTTGCTTGTTTTGTGAA
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