CX047310 | Citrus Genome Database

Overview


Name	CX047310
Unique Name	CX047310
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	659

Libraries


Library Name	Type
Ruby Orange Developing Seed cDNA Library UCRCS09	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig4536	contig	Csv1_Contig4536:136..794.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

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BLAST of CX047310 vs. ExPASy Swiss-Prot
Match: RL321_ARATH (60S ribosomal protein L32-1 OS=Arabidopsis thaliana GN=RPL32A PE=2 SV=2)

HSP 1 Score: 218.009 bits (554), Expect = 3.418e-56
Identity = 106/133 (79.70%), Postives = 115/133 (86.47%), Query Frame = 3

Query:   75 MAVPXXXXXXXXXXXXXXXRPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLPNGFKKFVVHNTKELELLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDIVVTNKLARLRSQEDE 473
            MAVP               RPQSDR+I+VKE+WRRPKGIDSRVRRKFKG TLMPN+GYGSDKKTRHYLPNGFKKFVVHNT ELELLMMHNRTYCAEIAH+VST+KRK IVERA+QLD+VVTN+LARLRSQEDE
Sbjct:    1 MAVPLLTKKVVKKRSAKFIRPQSDRRITVKESWRRPKGIDSRVRRKFKGVTLMPNVGYGSDKKTRHYLPNGFKKFVVHNTSELELLMMHNRTYCAEIAHNVSTKKRKAIVERASQLDVVVTNRLARLRSQEDE 133

[Close]

BLAST of CX047310 vs. ExPASy Swiss-Prot
Match: RL322_ARATH (60S ribosomal protein L32-2 OS=Arabidopsis thaliana GN=RPL32B PE=2 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 2.215e-55
Identity = 103/133 (77.44%), Postives = 114/133 (85.71%), Query Frame = 3

Query:   75 MAVPXXXXXXXXXXXXXXXRPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLPNGFKKFVVHNTKELELLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDIVVTNKLARLRSQEDE 473
            MAVP               RPQSDR+I+VKE+WRRPKGIDSRVRRKFKG TLMPN+GYGSDKKTRHYLPNGFKKF+VHNT ELELLMMHNRTYCAEIAH++ST+KRK IVERA+QLD+VV+NKL RLRSQEDE
Sbjct:    1 MAVPLLTKKVVKKRSAKFIRPQSDRRITVKESWRRPKGIDSRVRRKFKGVTLMPNVGYGSDKKTRHYLPNGFKKFIVHNTSELELLMMHNRTYCAEIAHNISTKKRKAIVERASQLDVVVSNKLGRLRSQEDE 133

[Close]

BLAST of CX047310 vs. ExPASy Swiss-Prot
Match: RL32_SPOFR (60S ribosomal protein L32 OS=Spodoptera frugiperda GN=RpL32 PE=2 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.394e-41
Identity = 82/114 (71.93%), Postives = 95/114 (83.33%), Query Frame = 3

Query:  132 RPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLPNGFKKFVVHNTKELELLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDIVVTNKLARLRSQEDE 473
            R QSDR   +K NWR+P+GID+RVRR+FKG  LMPNIGYGS+KKTRH LPNGF+K +VHN +ELE+LMM NR YCAEIAH VS++KRK IVERA QL I VTN  ARLRSQE+E
Sbjct:   21 RHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKTRHMLPNGFRKVLVHNVRELEILMMQNRKYCAEIAHGVSSKKRKTIVERAQQLSIRVTNSAARLRSQENE 134

[Close]

BLAST of CX047310 vs. ExPASy Swiss-Prot
Match: RL32_RAT (60S ribosomal protein L32 OS=Rattus norvegicus GN=Rpl32 PE=1 SV=2)

HSP 1 Score: 168.318 bits (425), Expect = 3.106e-41
Identity = 79/114 (69.30%), Postives = 99/114 (86.84%), Query Frame = 3

Query:  132 RPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLPNGFKKFVVHNTKELELLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDIVVTNKLARLRSQEDE 473
            R QSDR + +K NWR+P+GID+RVRR+FKG  LMPNIGYGS+KKT+H LP+GF+KF+VHN KELE+L+M N++YCAEIAH+VS++ RK IVERAAQL I VTN  ARLRS+E+E
Sbjct:   22 RHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGSNKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRVTNPNARLRSEENE 135

[Close]

BLAST of CX047310 vs. ExPASy Swiss-Prot
Match: RL32_PIG (60S ribosomal protein L32 OS=Sus scrofa GN=RPL32 PE=2 SV=3)

HSP 1 Score: 168.318 bits (425), Expect = 3.106e-41
Identity = 79/114 (69.30%), Postives = 99/114 (86.84%), Query Frame = 3

Query:  132 RPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLPNGFKKFVVHNTKELELLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDIVVTNKLARLRSQEDE 473
            R QSDR + +K NWR+P+GID+RVRR+FKG  LMPNIGYGS+KKT+H LP+GF+KF+VHN KELE+L+M N++YCAEIAH+VS++ RK IVERAAQL I VTN  ARLRS+E+E
Sbjct:   22 RHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGSNKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRVTNPNARLRSEENE 135

[Close]

BLAST of CX047310 vs. ExPASy Swiss-Prot
Match: RL32_MOUSE (60S ribosomal protein L32 OS=Mus musculus GN=Rpl32 PE=2 SV=2)

HSP 1 Score: 168.318 bits (425), Expect = 3.106e-41
Identity = 79/114 (69.30%), Postives = 99/114 (86.84%), Query Frame = 3

Query:  132 RPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLPNGFKKFVVHNTKELELLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDIVVTNKLARLRSQEDE 473
            R QSDR + +K NWR+P+GID+RVRR+FKG  LMPNIGYGS+KKT+H LP+GF+KF+VHN KELE+L+M N++YCAEIAH+VS++ RK IVERAAQL I VTN  ARLRS+E+E
Sbjct:   22 RHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGSNKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRVTNPNARLRSEENE 135

[Close]

BLAST of CX047310 vs. ExPASy Swiss-Prot
Match: RL32_MACFA (60S ribosomal protein L32 OS=Macaca fascicularis GN=RPL32 PE=2 SV=3)

HSP 1 Score: 168.318 bits (425), Expect = 3.106e-41
Identity = 79/114 (69.30%), Postives = 99/114 (86.84%), Query Frame = 3

Query:  132 RPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLPNGFKKFVVHNTKELELLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDIVVTNKLARLRSQEDE 473
            R QSDR + +K NWR+P+GID+RVRR+FKG  LMPNIGYGS+KKT+H LP+GF+KF+VHN KELE+L+M N++YCAEIAH+VS++ RK IVERAAQL I VTN  ARLRS+E+E
Sbjct:   22 RHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGSNKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRVTNPNARLRSEENE 135

[Close]

BLAST of CX047310 vs. ExPASy Swiss-Prot
Match: RL32_HUMAN (60S ribosomal protein L32 OS=Homo sapiens GN=RPL32 PE=1 SV=2)

HSP 1 Score: 168.318 bits (425), Expect = 3.106e-41
Identity = 79/114 (69.30%), Postives = 99/114 (86.84%), Query Frame = 3

Query:  132 RPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLPNGFKKFVVHNTKELELLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDIVVTNKLARLRSQEDE 473
            R QSDR + +K NWR+P+GID+RVRR+FKG  LMPNIGYGS+KKT+H LP+GF+KF+VHN KELE+L+M N++YCAEIAH+VS++ RK IVERAAQL I VTN  ARLRS+E+E
Sbjct:   22 RHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGSNKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRVTNPNARLRSEENE 135

[Close]

BLAST of CX047310 vs. ExPASy Swiss-Prot
Match: RL32_BOVIN (60S ribosomal protein L32 OS=Bos taurus GN=RPL32 PE=2 SV=3)

HSP 1 Score: 167.933 bits (424), Expect = 4.056e-41
Identity = 78/114 (68.42%), Postives = 99/114 (86.84%), Query Frame = 3

Query:  132 RPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLPNGFKKFVVHNTKELELLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDIVVTNKLARLRSQEDE 473
            R QSDR + +K NWR+P+GID+RVRR+FKG  LMPNIGYGS+KKT+H LP+GF+KF+VHN KELE+L+M N++YCAEIAH+VS++ RK IVERAAQL I +TN  ARLRS+E+E
Sbjct:   22 RHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGSNKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRITNPNARLRSEENE 135

[Close]

BLAST of CX047310 vs. ExPASy Swiss-Prot
Match: RL32_ICTPU (60S ribosomal protein L32 OS=Ictalurus punctatus GN=rpl32 PE=2 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 2.629e-40
Identity = 78/114 (68.42%), Postives = 97/114 (85.09%), Query Frame = 3

Query:  132 RPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLPNGFKKFVVHNTKELELLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDIVVTNKLARLRSQEDE 473
            R QSDR + ++ NWR+P+GID+RVR  FKG  LMPNIGYGS+KKT+H LP+GFKKF+VHN KELE+L+M N++YCAEIAH+VS++ RK IVERAAQL I VTN  ARLRS+E+E
Sbjct:   22 RHQSDRYVKIRRNWRKPRGIDNRVRSGFKGQMLMPNIGYGSNKKTKHMLPSGFKKFLVHNVKELEVLLMSNKSYCAEIAHNVSSKNRKVIVERAAQLAIKVTNPNARLRSEENE 135

The following BLAST results are available for this feature:

BLAST of CX047310 vs. ExPASy Swiss-Prot

BLAST of CX047310 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51


Match Name	E-value	Identity	Description
RL321_ARATH	3.418e-56	79.70	60S ribosomal protein L32-1 OS=Arabidopsis thalian...	[more]
RL322_ARATH	2.215e-55	77.44	60S ribosomal protein L32-2 OS=Arabidopsis thalian...	[more]
RL32_SPOFR	1.394e-41	71.93	60S ribosomal protein L32 OS=Spodoptera frugiperda...	[more]
RL32_RAT	3.106e-41	69.30	60S ribosomal protein L32 OS=Rattus norvegicus GN=...	[more]
RL32_PIG	3.106e-41	69.30	60S ribosomal protein L32 OS=Sus scrofa GN=RPL32 P...	[more]
RL32_MOUSE	3.106e-41	69.30	60S ribosomal protein L32 OS=Mus musculus GN=Rpl32...	[more]
RL32_MACFA	3.106e-41	69.30	60S ribosomal protein L32 OS=Macaca fascicularis G...	[more]
RL32_HUMAN	3.106e-41	69.30	60S ribosomal protein L32 OS=Homo sapiens GN=RPL32...	[more]
RL32_BOVIN	4.056e-41	68.42	60S ribosomal protein L32 OS=Bos taurus GN=RPL32 P...	[more]
RL32_ICTPU	2.629e-40	68.42	60S ribosomal protein L32 OS=Ictalurus punctatus G...	[more]

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Properties


Property Name	Value
Genbank description	UCRCS09_13D06_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-13D06-G12-1-4.g, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CX047310 ID=CX047310; Name=CX047310; organism=Citrus sinensis; type=EST; length=659bp
CTTAGCTAACCCTTTGAAAGGCCTCGCGGCCAAGCTGAACCCTAGCTCAA
ATCACTGGGAAGAAGGTAAGGAAGATGGCGGTTCCGTTACTGTCGAAGAA
GATAGTGAAGAAGAGGCTGAAGAAGTTCAAGAGGCCTCAGAGCGATCGCA
AGATCTCCGTCAAGGAAAATTGGCGCAGACCAAAGGGTATTGATTCCCGG
GTGCGAAGAAAGTTCAAGGGATGCACTCTAATGCCCAACATTGGTTATGG
TTCGGACAAGAAGACACGCCACTATCTTCCAAATGGTTTCAAGAAATTTG
TGGTGCACAATACGAAAGAGCTTGAATTGTTGATGATGCACAACAGGACC
TACTGTGCTGAAATTGCCCATGATGTTTCCACGAGGAAGAGGAAAGAGAT
TGTGGAGCGAGCTGCCCAACTTGATATTGTTGTGACTAACAAGCTTGCTA
GATTGAGAAGCCAGGAAGATGAATGAGATTAAACAATCTGTTCTTTTTAG
TAGTAGTGAGTCTTGTTTTGTACGCTTTATCAAAATTTTGAAAATTTTGA
CTTACAAAGATACGACCGTTTGTGATTTTTTATTTTTTTTGGGATGAGTG
ATAATACAGTAGTTTTTATTTCATAAAAATATTATTATTGCCGAAAAAAA
AAAAAAAAA