CX047278

Overview
NameCX047278
Unique NameCX047278
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length662
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047278 vs. ExPASy Swiss-Prot
Match: MCATL_RAT (Mitochondrial carnitine/acylcarnitine carrier protein CACL OS=Rattus norvegicus GN=Slc25a29 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.040e-15
Identity = 42/93 (45.16%), Postives = 58/93 (62.37%), Query Frame = -1
Query:  267 EYVAGLIAGVATVIVGHPFDTVKVKLQKHNTEVHGIRYKNGLHCTARILRTEGVRGLYRGATPSFLGMAFESSLLFGIYSQTKQLLQVCKTLN 545
            +++AG   GVA VIVGHPFDTVKV+LQ  NTE    +Y+  LHC   I++ E V GLY+G     +G+ F ++L+FG+   T + L     LN
Sbjct:    4 DFLAGCAGGVAGVIVGHPFDTVKVRLQVQNTEKP--QYRGTLHCFQSIIKQESVLGLYKGLGSPLMGLTFINALVFGVQGNTLRALGQDSPLN 94          
BLAST of CX047278 vs. ExPASy Swiss-Prot
Match: MCFS_DICDI (Mitochondrial substrate carrier family protein S OS=Dictyostelium discoideum GN=mcfS PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.501e-14
Identity = 40/90 (44.44%), Postives = 55/90 (61.11%), Query Frame = -1
Query:  285 GYKEYVAGLIAGVATVIVGHPFDTVKVKLQKHNTEVHGIRYKNGLHCTARILRTEGVRGLYRGATPSFLGMAFESSLLFGIYSQTKQLLQ 554
            G K+ +AG +AG A +  GHPFDT++V+LQ  NT + GI     + C    ++ EG  GLY+G T    GM FE+++LF  Y Q K LLQ
Sbjct:    6 GLKDSIAGTVAGAACLFTGHPFDTIRVRLQTSNTPI-GI-----MECFRNTIKYEGFSGLYKGVTSPLFGMMFETAVLFAGYGQMKVLLQ 89          
BLAST of CX047278 vs. ExPASy Swiss-Prot
Match: MCATL_BOVIN (Mitochondrial carnitine/acylcarnitine carrier protein CACL OS=Bos taurus GN=SLC25A29 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.267e-14
Identity = 41/93 (44.09%), Postives = 57/93 (61.29%), Query Frame = -1
Query:  267 EYVAGLIAGVATVIVGHPFDTVKVKLQKHNTEVHGIRYKNGLHCTARILRTEGVRGLYRGATPSFLGMAFESSLLFGIYSQTKQLLQVCKTLN 545
            +++AG   GVA V+VGHPFDTVKV+LQ  + E    +Y+  LHC   I++ E V GLYRG     LG+ F ++L+FG+   T + L     LN
Sbjct:    4 DFLAGCAGGVAGVLVGHPFDTVKVRLQVQSVEKP--QYRGTLHCFQAIIKQESVLGLYRGLGSPLLGLTFINALVFGVQGNTLRALGRDSPLN 94          
BLAST of CX047278 vs. ExPASy Swiss-Prot
Match: MCATL_MOUSE (Mitochondrial carnitine/acylcarnitine carrier protein CACL OS=Mus musculus GN=Slc25a29 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 9.505e-14
Identity = 40/93 (43.01%), Postives = 57/93 (61.29%), Query Frame = -1
Query:  267 EYVAGLIAGVATVIVGHPFDTVKVKLQKHNTEVHGIRYKNGLHCTARILRTEGVRGLYRGATPSFLGMAFESSLLFGIYSQTKQLLQVCKTLN 545
            +++AG   GVA VIVGHPFD VKV+LQ  +TE    +Y+  LHC   I++ E V GLY+G     +G+ F ++L+FG+   T + L     LN
Sbjct:    4 DFLAGCAGGVAGVIVGHPFDIVKVRLQVQSTEKP--QYRGTLHCFQSIIKQESVLGLYKGLGSPLMGLTFINALVFGVQGNTLRALGQDSPLN 94          
BLAST of CX047278 vs. ExPASy Swiss-Prot
Match: MCATL_HUMAN (Mitochondrial carnitine/acylcarnitine carrier protein CACL OS=Homo sapiens GN=SLC25A29 PE=2 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 1.621e-13
Identity = 39/93 (41.94%), Postives = 57/93 (61.29%), Query Frame = -1
Query:  267 EYVAGLIAGVATVIVGHPFDTVKVKLQKHNTEVHGIRYKNGLHCTARILRTEGVRGLYRGATPSFLGMAFESSLLFGIYSQTKQLLQVCKTLN 545
            +++AG   GVA V+VGHPFDTVKV+LQ  + E    +Y+  LHC   I++ E V GLY+G     +G+ F ++L+FG+   T + L     LN
Sbjct:    4 DFLAGCAGGVAGVLVGHPFDTVKVRLQVQSVEKP--QYRGTLHCFKSIIKQESVLGLYKGLGSPLMGLTFINALVFGVQGNTLRALGHDSPLN 94          
BLAST of CX047278 vs. ExPASy Swiss-Prot
Match: MCP62_DANRE (Putative mitochondrial carrier protein FLJ44862 homolog OS=Danio rerio GN=zgc:92090 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.415e-11
Identity = 33/86 (38.37%), Postives = 51/86 (59.30%), Query Frame = -1
Query:  288 EYVAGLIAGVATVIVGHPFDTVKVKLQKHNTEVHGIRYKNGLHCTARILRTEGVRGLYRGATPSFLGMAFESSLLFGIYSQTKQLL 545
            +++AG I G ++VIVGHP DTVK +LQ       G  YKN  HC   I + E V G ++G +     +   +S++FG +S T++L+
Sbjct:    8 DFLAGWIGGASSVIVGHPLDTVKTRLQA------GKGYKNTFHCVVTIYKKENVIGFFKGLSFPLASITLYNSMVFGFFSNTQRLI 87          
BLAST of CX047278 vs. ExPASy Swiss-Prot
Match: MCFL_DICDI (Mitochondrial substrate carrier family protein L OS=Dictyostelium discoideum GN=mcfL PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.415e-11
Identity = 33/92 (35.87%), Postives = 52/92 (56.52%), Query Frame = -1
Query:  273 KEYVAGLIAGVATVIVGHPFDTVKVKLQKHNTEVHGIRYKNGLHCTARILRTEGVRGLYRGATPSFLGMAFESSLLFGIYSQTKQLLQVCKT 548
            + ++ G  +G A+ + GHPFDT+KV+LQ   TE    R++   HC    ++ EG   LY+G TP  LGM+  +S +FG  +  K  +   K+
Sbjct:   12 RNFIGGFASGAASTLAGHPFDTLKVRLQ---TEGSTGRFRGLAHCFTTTIKEEGFFALYKGVTPPLLGMSIINSCMFGAMNIVKSKIHTDKS 100          
BLAST of CX047278 vs. ExPASy Swiss-Prot
Match: MCFG_DICDI (Mitochondrial substrate carrier family protein G OS=Dictyostelium discoideum GN=mcfG PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.767e-11
Identity = 34/88 (38.64%), Postives = 50/88 (56.82%), Query Frame = -1
Query:  285 KEYVAGLIAGVATVIVGHPFDTVKVKLQKHNTEVHGIRYKNGLHCTARILRTEGVRGLYRGATPSFLGMAFESSLLFGIYSQTKQLLQ 548
            K+ VAG I GV  V  GHP DT+KV+LQ  +  V    Y   + C  + +  EG  GLY+G     +G++  +S++F  Y Q+K L+Q
Sbjct:   15 KDIVAGSIGGVGQVFTGHPLDTIKVRLQTQS--VGNPIYSGTMDCLKKTISQEGFAGLYKGVASPLVGLSIMNSVMFLAYGQSKTLIQ 100          
BLAST of CX047278 vs. ExPASy Swiss-Prot
Match: S2545_MOUSE (Solute carrier family 25 member 45 OS=Mus musculus GN=Slc25a45 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.531e-11
Identity = 33/83 (39.76%), Postives = 51/83 (61.45%), Query Frame = -1
Query:  300 KEYVAGLIAGVATVIVGHPFDTVKVKLQKHNTEVHGIRYKNGLHCTARILRTEGVRGLYRGATPSFLGMAFESSLLFGIYSQT 548
            +E+VAG I+G   +++GHPFDTVKV+LQ  +T      Y+  + C  +  R E V G ++G +     +A  +S+LFG+YS T
Sbjct:    4 EEFVAGWISGAVGLVLGHPFDTVKVRLQTQST------YQGIVDCVVKTYRHESVLGFFKGMSFPIASVALVNSVLFGVYSNT 80          
BLAST of CX047278 vs. ExPASy Swiss-Prot
Match: S2545_HUMAN (Solute carrier family 25 member 45 OS=Homo sapiens GN=SLC25A45 PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 7.531e-11
Identity = 34/87 (39.08%), Postives = 53/87 (60.92%), Query Frame = -1
Query:  288 KEYVAGLIAGVATVIVGHPFDTVKVKLQKHNTEVHGIRYKNGLHCTARILRTEGVRGLYRGATPSFLGMAFESSLLFGIYSQTKQLL 548
            +E+VAG I+G   +++GHPFDTVKV+LQ   T      Y+  + C  +I R E + G ++G +     +A  +S+LFG+YS T  +L
Sbjct:    4 EEFVAGWISGALGLVLGHPFDTVKVRLQTQTT------YRGIVDCMVKIYRHESLLGFFKGMSFPIASIAVVNSVLFGVYSNTLLVL 84          
The following BLAST results are available for this feature:
BLAST of CX047278 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
MCATL_RAT5.040e-1545.16Mitochondrial carnitine/acylcarnitine carrier prot... [more]
MCFS_DICDI2.501e-1444.44Mitochondrial substrate carrier family protein S O... [more]
MCATL_BOVIN4.267e-1444.09Mitochondrial carnitine/acylcarnitine carrier prot... [more]
MCATL_MOUSE9.505e-1443.01Mitochondrial carnitine/acylcarnitine carrier prot... [more]
MCATL_HUMAN1.621e-1341.94Mitochondrial carnitine/acylcarnitine carrier prot... [more]
MCP62_DANRE4.415e-1138.37Putative mitochondrial carrier protein FLJ44862 ho... [more]
MCFL_DICDI4.415e-1135.87Mitochondrial substrate carrier family protein L O... [more]
MCFG_DICDI5.767e-1138.64Mitochondrial substrate carrier family protein G O... [more]
S2545_MOUSE7.531e-1139.76Solute carrier family 25 member 45 OS=Mus musculus... [more]
S2545_HUMAN7.531e-1139.08Solute carrier family 25 member 45 OS=Homo sapiens... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_13C01_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-13C01-E2-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047278 ID=CX047278; Name=CX047278; organism=Citrus sinensis; type=EST; length=662bp
TTTTTTCTAATTCACTAACCTTCACTAGCTCTGATGGACATAACACAAAA
CTGATAATAGATCCACCAAAAGCTGCTGAAGGAATTATTACATTGGGTTG
TGGTCCACCACTTTGTACCCCTCCCTTAATTTTGGAAAAAAATAAAAGTT
CATAAGTGTTTGATAGGTAGACGACGCGTTTAAGGAAAAGTATCAACGGT
ATTATTGATGGAAATGATTTGTGGTTATCATTTAGTGCCGAGTAGAAACA
GCAAACAGATAGTTCAATTCAATGTCTTACAAACCTGCAGTAGCTGTTTT
GTTTGGGAATAGATACCAAAAAGAAGTGAACTCTCAAAAGCCATCCCAAG
GAATGATGGCGTTGCTCCTCTGTAGAGTCCTCTAACCCCTTCAGTTCTGA
GTATCCTTGCAGTGCAATGCAAACCATTCTTGTACCTAATCCCATGCACT
TCAGTATTGTGTTTCTGCAGCTTCACCTTGACGGTGTCGAAAGGATGACC
GACAATGACGGTAGCAACACCGGCGATTAAGCCTGCCACATACTCTTTGT
AACCGGAACCCCAACTCTCTTCCATCTCTCTACTTTCCCTGAAATTTAAA
ACCCTCTGCTTTGTCGTGTCCACGTCTCTCTCACTCTTTCCCTCCCAATT
TTGGACGGTTCA
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