CX047276

Overview
NameCX047276
Unique NameCX047276
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length570
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX047276_ssr173 microsatellite CX047276_ssr173:173..184. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig13763 contig Csv1_Contig13763:183..752. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX047276 vs. ExPASy Swiss-Prot
Match: RS16_LUPPO (40S ribosomal protein S16 OS=Lupinus polyphyllus GN=RPS16 PE=2 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 2.211e-55
Identity = 107/111 (96.40%), Postives = 109/111 (98.20%), Query Frame = -1
Query:  238 GCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 570
            G PIELVEPEILRFKA+EPILLLG+ RFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR
Sbjct:   35 GSPIELVEPEILRFKAFEPILLLGKSRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 145          
BLAST of CX047276 vs. ExPASy Swiss-Prot
Match: RS16_GOSHI (40S ribosomal protein S16 OS=Gossypium hirsutum GN=RPS16 PE=2 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 2.888e-55
Identity = 107/111 (96.40%), Postives = 107/111 (96.40%), Query Frame = -1
Query:  238 GCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 570
            GCPIELVEPEILRFKA EPILLLGR RF GVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILV YDRTLLVADPRRCEPKKFGGRGARARFQKSYR
Sbjct:   35 GCPIELVEPEILRFKAVEPILLLGRQRFTGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVGYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 145          
BLAST of CX047276 vs. ExPASy Swiss-Prot
Match: RS161_ARATH (40S ribosomal protein S16-1 OS=Arabidopsis thaliana GN=RPS16A PE=2 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 9.290e-54
Identity = 100/111 (90.09%), Postives = 108/111 (97.30%), Query Frame = -1
Query:  238 GCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 570
            GCPIEL +PEILRFK +EPILLLG+HRFAGV+MRIRV GGGHTSQ+YAIRQSIAKALVA+YQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGAR+R+QKSYR
Sbjct:   36 GCPIELFQPEILRFKIFEPILLLGKHRFAGVNMRIRVNGGGHTSQVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARSRYQKSYR 146          
BLAST of CX047276 vs. ExPASy Swiss-Prot
Match: RS163_ARATH (40S ribosomal protein S16-3 OS=Arabidopsis thaliana GN=RPS16C PE=2 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 1.213e-53
Identity = 99/111 (89.19%), Postives = 108/111 (97.30%), Query Frame = -1
Query:  238 GCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 570
            GCPIEL +PEILRFK +EP+LLLG+HRFAGV+MRIRV GGGHTSQ+YAIRQSIAKALVA+YQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGAR+R+QKSYR
Sbjct:   36 GCPIELFQPEILRFKIFEPVLLLGKHRFAGVNMRIRVNGGGHTSQVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARSRYQKSYR 146          
BLAST of CX047276 vs. ExPASy Swiss-Prot
Match: RS16_FRIAG (40S ribosomal protein S16 OS=Fritillaria agrestis GN=RPS16 PE=2 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 1.341e-52
Identity = 99/111 (89.19%), Postives = 108/111 (97.30%), Query Frame = -1
Query:  238 GCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 570
            G PIELV+PEILR+KA+EPILLLGRHRF GVDMRIRV+GGG TSQIYAIRQSIAKALVA+YQKYVDEQ+KKE+KDIL+RYDRTLLVADPRRCEPKKFGGRGAR+RFQKSYR
Sbjct:   35 GSPIELVKPEILRYKAFEPILLLGRHRFVGVDMRIRVRGGGKTSQIYAIRQSIAKALVAYYQKYVDEQAKKEVKDILMRYDRTLLVADPRRCEPKKFGGRGARSRFQKSYR 145          
BLAST of CX047276 vs. ExPASy Swiss-Prot
Match: RS16_TORRU (40S ribosomal protein S16 OS=Tortula ruralis GN=RPS16 PE=2 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 6.657e-52
Identity = 98/109 (89.91%), Postives = 108/109 (99.08%), Query Frame = -1
Query:  238 PIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 564
            PIELVEPEILR+KA+EP+LLLGR +FAGVDMRIRVKGGG+TSQIYAIRQSIAKALVA++QKYVDEQSKKEIKD+L+RYDRTLLVADPRRCEPKKFGGRGAR+RFQKSYR
Sbjct:   34 PIELVEPEILRYKAFEPVLLLGRSKFAGVDMRIRVKGGGNTSQIYAIRQSIAKALVAYFQKYVDEQSKKEIKDVLLRYDRTLLVADPRRCEPKKFGGRGARSRFQKSYR 142          
BLAST of CX047276 vs. ExPASy Swiss-Prot
Match: RS162_ARATH (40S ribosomal protein S16-2 OS=Arabidopsis thaliana GN=RPS16B PE=2 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 8.138e-50
Identity = 95/111 (85.59%), Postives = 104/111 (93.69%), Query Frame = -1
Query:  238 GCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 570
            G PIEL +PEILRFK +EP+LLLG+HRFAGVDMRIR  GGG+TS++YAIRQSIAKALVA+YQKYVDEQSKKEIKDIL+RYDRTLLVADPRRCE KKFGG GARARFQKSYR
Sbjct:   36 GSPIELYQPEILRFKIFEPVLLLGKHRFAGVDMRIRATGGGNTSRVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILMRYDRTLLVADPRRCESKKFGGPGARARFQKSYR 146          
BLAST of CX047276 vs. ExPASy Swiss-Prot
Match: RS16_ORYSJ (40S ribosomal protein S16 OS=Oryza sativa subsp. japonica GN=RPS16A PE=2 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 4.466e-48
Identity = 92/111 (82.88%), Postives = 100/111 (90.09%), Query Frame = -1
Query:  238 GCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 570
            G PIEL+ PE+LR KA+EPILL GR RF  +DMRIRV+GGG TSQIYAIRQ+IAKALVA+YQKYVDE SKKE+KDI  RYDRTLLVADPRRCEPKKFGGRGARARFQKSYR
Sbjct:   39 GVPIELIRPEMLRLKAFEPILLAGRSRFKDIDMRIRVRGGGKTSQIYAIRQAIAKALVAYYQKYVDEASKKEVKDIFARYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 149          
BLAST of CX047276 vs. ExPASy Swiss-Prot
Match: RS16_ORYSI (40S ribosomal protein S16 OS=Oryza sativa subsp. indica GN=RPS16A PE=2 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 4.466e-48
Identity = 92/111 (82.88%), Postives = 100/111 (90.09%), Query Frame = -1
Query:  238 GCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 570
            G PIEL+ PE+LR KA+EPILL GR RF  +DMRIRV+GGG TSQIYAIRQ+IAKALVA+YQKYVDE SKKE+KDI  RYDRTLLVADPRRCEPKKFGGRGARARFQKSYR
Sbjct:   39 GVPIELIRPEMLRLKAFEPILLAGRSRFKDIDMRIRVRGGGKTSQIYAIRQAIAKALVAYYQKYVDEASKKEVKDIFARYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 149          
BLAST of CX047276 vs. ExPASy Swiss-Prot
Match: RS16_RAT (40S ribosomal protein S16 OS=Rattus norvegicus GN=Rps16 PE=1 SV=2)

HSP 1 Score: 183.726 bits (465), Expect = 5.459e-46
Identity = 86/111 (77.48%), Postives = 101/111 (90.99%), Query Frame = -1
Query:  238 GCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 570
            G P+E++EP  L++K  EP+LLLG+ RFAGVD+R+RVKGGGH +QIYAIRQSI+KALVA+YQKYVDE SKKEIKDIL++YDRTLLVADPRRCE KKFGG GARAR+QKSYR
Sbjct:   36 GRPLEMIEPRTLQYKLLEPVLLLGKERFAGVDIRVRVKGGGHVAQIYAIRQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPRRCESKKFGGPGARARYQKSYR 146          
The following BLAST results are available for this feature:
BLAST of CX047276 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
RS16_LUPPO2.211e-5596.4040S ribosomal protein S16 OS=Lupinus polyphyllus G... [more]
RS16_GOSHI2.888e-5596.4040S ribosomal protein S16 OS=Gossypium hirsutum GN... [more]
RS161_ARATH9.290e-5490.0940S ribosomal protein S16-1 OS=Arabidopsis thalian... [more]
RS163_ARATH1.213e-5389.1940S ribosomal protein S16-3 OS=Arabidopsis thalian... [more]
RS16_FRIAG1.341e-5289.1940S ribosomal protein S16 OS=Fritillaria agrestis ... [more]
RS16_TORRU6.657e-5289.9140S ribosomal protein S16 OS=Tortula ruralis GN=RP... [more]
RS162_ARATH8.138e-5085.5940S ribosomal protein S16-2 OS=Arabidopsis thalian... [more]
RS16_ORYSJ4.466e-4882.8840S ribosomal protein S16 OS=Oryza sativa subsp. j... [more]
RS16_ORYSI4.466e-4882.8840S ribosomal protein S16 OS=Oryza sativa subsp. i... [more]
RS16_RAT5.459e-4677.4840S ribosomal protein S16 OS=Rattus norvegicus GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_13B11_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-13B11-C22-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047276 ID=CX047276; Name=CX047276; organism=Citrus sinensis; type=EST; length=570bp
TTTTTTTGAAAATTAATTGACACTAAAACATGCATTAGACAACCATATCA
TCCATTACAAAATTTAACCTTCAACAGTAATTCATTACCGCCTCACCAAA
GCCTTAATATCTCATAAACTACTAACATTTAATGATCCAGTCTCAAAATA
ACCAAAATTTCATAAAAAAGTAAAACAAACAAACTAAAATAGCAAAACGA
AAAGCCGTTTCGTTTCGCTTCCTTGCATTCCCGCTCAACGGTAACTCTTC
TGGAACCGAGCCCTAGCGCCACGTCCACCGAACTTCTTGGGCTCGCACCG
GCGTGGGTCTGCCACAAGCAGGGTCCTGTCGTACCTAACGAGAATGTCCT
TAATCTCCTTCTTGCTCTGCTCGTCAACATACTTCTGGTAGAAAGCCACG
AGAGCCTTGGCGATGCTCTGACGGATGGCGTAGATCTGCGACGTGTGTCC
CCCGCCCTTCACGCGGATTCTCATGTCCACGCCGGCGAATCGGTGTCGCC
CGAGCAAGAGAATTGGCTCGTATGCCTTGAAGCGGAGGATCTCCGGCTCG
ACTAACTCGATCGGGCAGCC
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