CX047265

Overview
NameCX047265
Unique NameCX047265
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length882
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7759 contig Csv1_Contig7759:246..1127. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX047265 vs. ExPASy Swiss-Prot
Match: EF1D2_ARATH (Elongation factor 1-delta 2 OS=Arabidopsis thaliana GN=At2g18110 PE=2 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 3.092e-54
Identity = 118/209 (56.46%), Postives = 131/209 (62.68%), Query Frame = -2
Query:  273 RSYITGYQASKDDITVYSALSKAPSSEYVNVSRWYKHIDALLRIXXXXXXXXXXXXXXSAPVATXXXXXXXXXXXXXXXXXXD------LFGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQIMLTIVDDLVSVDTLIEEHLLEEPINEYVQSCDIVAFNKI 881
            RSYITGYQASKDDITV++ALSK P+SE+VNVSRW+ HIDALLRI              S+P+                    +      LFG                             SVL+D+KPWDDETDMKKLEEAVRS+QMEGL WGASKL PVGYGIKKL IM TIVDDLVS+DT+IEE L  EPINEYVQSCDIVAFNKI
Sbjct:   23 RSYITGYQASKDDITVFTALSKPPTSEFVNVSRWFNHIDALLRISGVSAEGSGVIVEGSSPITEEAVATPPAADSKDTAAEEEDDDDVDLFGEETEEEKKAAEERAASVKASTKKKESGKSSVLMDIKPWDDETDMKKLEEAVRSIQMEGLFWGASKLVPVGYGIKKLHIMCTIVDDLVSIDTMIEEQLTVEPINEYVQSCDIVAFNKI 231          
BLAST of CX047265 vs. ExPASy Swiss-Prot
Match: EF1D1_ARATH (Elongation factor 1-delta 1 OS=Arabidopsis thaliana GN=At1g30230 PE=2 SV=2)

HSP 1 Score: 212.231 bits (539), Expect = 3.092e-54
Identity = 117/209 (55.98%), Postives = 131/209 (62.68%), Query Frame = -2
Query:  273 RSYITGYQASKDDITVYSALSKAPSSEYVNVSRWYKHIDALLRIXXXXXXXXXXXXXXSAPVATXXXXXXXXXXXXXXXXXXD------LFGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQIMLTIVDDLVSVDTLIEEHLLEEPINEYVQSCDIVAFNKI 881
            RSYITGYQASKDDITV++AL+K P+S+YVN SRWY HIDALLRI              SAP+                    +      LFG                             SVL+D+KPWDDETDMKKLEEAV+S+QMEGL WGASKL PVGYGIKKLQI+ TIVDDLVS+DT+IEE L  EPINEYVQSCDIVAFNKI
Sbjct:   23 RSYITGYQASKDDITVFAALAKPPTSQYVNASRWYNHIDALLRISGVSAEGSGVIVEGSAPITEEAVATPPAADSKDAAADEEDDDDVDLFGEETEEEKKAAEERAASVKASTKKKESGKSSVLIDIKPWDDETDMKKLEEAVKSIQMEGLFWGASKLVPVGYGIKKLQILCTIVDDLVSIDTMIEEQLTVEPINEYVQSCDIVAFNKI 231          
BLAST of CX047265 vs. ExPASy Swiss-Prot
Match: EF1D_PIMBR (Elongation factor 1-delta OS=Pimpinella brachycarpa PE=2 SV=3)

HSP 1 Score: 203.756 bits (517), Expect = 1.100e-51
Identity = 112/203 (55.17%), Postives = 128/203 (63.05%), Query Frame = -2
Query:  273 RSYITGYQASKDDITVYSALSKAPSSEYVNVSRWYKHIDALLRIXXXXXXXXXXXXXXSAPVATXXXXXXXXXXXXXXXXXXDLFGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQIMLTIVDDLVSVDTLIEEHLLEEPINEYVQSCDIVAFNKI 881
            RSYI+GYQASKDD+ V++AL+K PSS+YVNVSRWY H++ALLRI              S+                      DLFG                             SVLLDVKPWDDETDM KLEEAVRS++M+GLLWGASKL  VGYGIKKLQIMLTIVDDLVSVD L+E++L  EP NEY+QSCDIVAFNKI
Sbjct:   24 RSYISGYQASKDDLAVHAALAKPPSSKYVNVSRWYNHVEALLRISGVSAEGCGVTVEGSSVATPPVADTKASAAEDDDDDDVDLFGEETEEEKKASEERAAAVKASGKKKESGKSSVLLDVKPWDDETDMTKLEEAVRSIKMDGLLWGASKLVAVGYGIKKLQIMLTIVDDLVSVDDLVEDYLTAEPANEYIQSCDIVAFNKI 226          
BLAST of CX047265 vs. ExPASy Swiss-Prot
Match: EF1D_BETVU (Elongation factor 1-delta OS=Beta vulgaris PE=2 SV=3)

HSP 1 Score: 200.29 bits (508), Expect = 1.216e-50
Identity = 121/208 (58.17%), Postives = 129/208 (62.02%), Query Frame = -2
Query:  273 RSYITGYQASKDDITVYSALSKAPSSEYVNVSRWYKHIDALLRIXXXXXXXXXXXXXXSAP---VATXXXXXXXXXXXXXXXXXXD-LFGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXS-VLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQIMLTIVDDLVSVDTLIEEHLLEEPINEYVQSCDIVAFNKI 881
            RSYITGYQASKDD+TV+SA+ KA  + YVNVSRWYKHIDALLRI              +AP   VAT                    LFG                             S VLLDVKPWDDETDMKKLEEAVRSVQ EGL  GASKL PVGYGIKKL IM+TIVDDLVSVD LIE++L  EPINEYVQSCDIVAFNKI
Sbjct:   24 RSYITGYQASKDDLTVFSAVPKASLASYVNVSRWYKHIDALLRISGVSGEGSGVTVEGNAPASDVATPPAADSKASAADDDDDDDVDLFGEETEEEKKAAEERAAAAAAKPAKKKESGKSSVLLDVKPWDDETDMKKLEEAVRSVQQEGLTLGASKLVPVGYGIKKLTIMMTIVDDLVSVDNLIEDYLTVEPINEYVQSCDIVAFNKI 231          
BLAST of CX047265 vs. ExPASy Swiss-Prot
Match: EF1D1_ORYSJ (Elongation factor 1-delta 1 OS=Oryza sativa subsp. japonica GN=Os07g0614500 PE=2 SV=3)

HSP 1 Score: 199.134 bits (505), Expect = 2.709e-50
Identity = 114/206 (55.34%), Postives = 128/206 (62.14%), Query Frame = -2
Query:  273 RSYITGYQASKDDITVYSALSKAPSSEYVNVSRWYKHIDALLRIXXXXXXXXXXXXXXSA-PVATXXXXXXXXXXXXXXXXXXD--LFGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQIMLTIVDDLVSVDTLIEEHLLEEPINEYVQSCDIVAFNKI 881
            RSYI+GYQAS DD+ VYSA S APSS Y NV+RW+ HIDALLR+              +A P A+                  D  LFG                             SVLLDVKPWDDETDM KLEEAVR+V+MEGLLWGASKL PVGYGIKKLQIM+TIVDDLVSVD+LIE++   EP NEY+QSCDIVAFNKI
Sbjct:   24 RSYISGYQASNDDLAVYSAFSTAPSSSYTNVARWFTHIDALLRLSGVTADGQGVKVESTAVPSASTPDVADAKAPAADDDDDDDVDLFGEETEEEKKAAEERAAAVKASGKKKESGKSSVLLDVKPWDDETDMTKLEEAVRNVKMEGLLWGASKLVPVGYGIKKLQIMMTIVDDLVSVDSLIEDYFYTEPANEYIQSCDIVAFNKI 229          
BLAST of CX047265 vs. ExPASy Swiss-Prot
Match: EF1D2_ORYSJ (Elongation factor 1-delta 2 OS=Oryza sativa subsp. japonica GN=Os03g0406200 PE=2 SV=3)

HSP 1 Score: 198.364 bits (503), Expect = 4.621e-50
Identity = 109/203 (53.69%), Postives = 127/203 (62.56%), Query Frame = -2
Query:  273 RSYITGYQASKDDITVYSALSKAPSSEYVNVSRWYKHIDALLRIXXXXXXXXXXXXXXSAPVATXXXXXXXXXXXXXXXXXXDLFGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQIMLTIVDDLVSVDTLIEEHLLEEPINEYVQSCDIVAFNKI 881
            RSYI+GYQASKDD+TV+++L  AP++ YVNV+RWY HI ALLR               +A   +                  DLFG                             SVLLDVKPWDDETDM KLEEAVR+V+MEGLLWGASKL PVGYGIKKLQIM+TIVDDLVSVD+LIE++   EP NE++QSCDIVAFNKI
Sbjct:   24 RSYISGYQASKDDMTVFTSLPSAPAASYVNVTRWYDHISALLRSSGVTAEGEGVKVESTACSVSPTADQKAPAADEEDDDDVDLFGEETEEEKKAAEERAAAVKASGKKKESGKSSVLLDVKPWDDETDMAKLEEAVRNVKMEGLLWGASKLVPVGYGIKKLQIMMTIVDDLVSVDSLIEDYFYTEPANEFIQSCDIVAFNKI 226          
BLAST of CX047265 vs. ExPASy Swiss-Prot
Match: EF1B_ORYSJ (Elongation factor 1-beta OS=Oryza sativa subsp. japonica GN=Os07g0662500 PE=1 SV=3)

HSP 1 Score: 166.392 bits (420), Expect = 1.946e-40
Identity = 82/87 (94.25%), Postives = 84/87 (96.55%), Query Frame = -2
Query:  273 VLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQIMLTIVDDLVSVDTLIEEHLLEEPINEYVQSCDIVAFNKI 533
            VLLDVKPWDDETDMKKLEEAVRSVQMEGL WGASKL PVGYGIKKLQIMLTIVDDLVSVD+LIEEHL EEPINE+VQSCDIVAFNKI
Sbjct:  138 VLLDVKPWDDETDMKKLEEAVRSVQMEGLTWGASKLVPVGYGIKKLQIMLTIVDDLVSVDSLIEEHLTEEPINEFVQSCDIVAFNKI 224          
BLAST of CX047265 vs. ExPASy Swiss-Prot
Match: EF1B2_ARATH (Elongation factor 1-beta 2 OS=Arabidopsis thaliana GN=At5g19510 PE=1 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 4.793e-39
Identity = 93/203 (45.81%), Postives = 111/203 (54.68%), Query Frame = -2
Query:  273 RSYITGYQASKDDITVYSALSKAPSSEYVNVSRWYKHIDALLRIXXXXXXXXXXXXXXSAPVATXXXXXXXXXXXXXXXXXXDLFGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQIMLTIVDDLVSVDTLIEEHLLEEPINEYVQSCDIVAFNKI 881
            ++YI+G Q S DD+ VY+A+   PS  + N S+WY+ + +  ++               +  A                   DLFG                             SVL+DVKPWDDETDMKKLEEAVR V+M GL WGASKL PVGYGIKKL IM TIVDDLVS D LIE+ L  EP NEY+QSCDIVAFNKI
Sbjct:   24 KTYISGDQLSVDDVKVYAAVPVKPSDAFPNASKWYESVAS--QLAKSFPGKAVGVQFGGSAAAAPAVEAEAPAAAADDDDDMDLFGDETEEEKKAAEEREAAKKDTKKPKESGKSSVLMDVKPWDDETDMKKLEEAVRGVEMPGLFWGASKLVPVGYGIKKLTIMFTIVDDLVSPDNLIEDFLTSEPNNEYIQSCDIVAFNKI 224          
BLAST of CX047265 vs. ExPASy Swiss-Prot
Match: EF1B1_ARATH (Elongation factor 1-beta 1 OS=Arabidopsis thaliana GN=At5g12110 PE=2 SV=2)

HSP 1 Score: 161.77 bits (408), Expect = 4.793e-39
Identity = 97/205 (47.32%), Postives = 112/205 (54.63%), Query Frame = -2
Query:  273 RSYITGYQASKDDITVYSALSKAPSSEYVNVSRWYKHIDALLRIXXXXXXXXXXXXXXSAPV--ATXXXXXXXXXXXXXXXXXXDLFGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQIMLTIVDDLVSVDTLIEEHLLEEPINEYVQSCDIVAFNKI 881
            ++YI+G Q S DD+ VY+A+ + P   + N S+WY  + + L                 AP   A                   DLF                              SVLL+VKPWDDETDMKKLEEAVRSVQM GL WGASKL PVGYGIKKL IM+TIVDDLVSVD LIE+HL  EP NEY+QS DIVAFNKI
Sbjct:   24 KTYISGDQLSVDDVKVYAAVLENPGDGFPNASKWYDSVASHLAKSFPGKADGVRVGGGVAPPSEAHPHTEEPAADGDGDDDDDIDLFADETEDEKKAAEEREAAKKDTKKTKESGKSSVLLEVKPWDDETDMKKLEEAVRSVQMPGLTWGASKLVPVGYGIKKLTIMMTIVDDLVSVDNLIEDHLTSEPNNEYIQSVDIVAFNKI 228          
BLAST of CX047265 vs. ExPASy Swiss-Prot
Match: EF1B_WHEAT (Elongation factor 1-beta OS=Triticum aestivum PE=1 SV=2)

HSP 1 Score: 147.902 bits (372), Expect = 7.162e-35
Identity = 75/87 (86.21%), Postives = 78/87 (89.66%), Query Frame = -2
Query:  273 VLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQIMLTIVDDLVSVDTLIEEHLLEEPINEYVQSCDIVAFNKI 533
            VL+D+KPWDDETDMKKLEEAVRSVQMEGL WGASKL PVGYGIKKLQIMLTI+DDL S  T IEE L E PINEYVQSCDIVAFNKI
Sbjct:  132 VLMDIKPWDDETDMKKLEEAVRSVQMEGLTWGASKLMPVGYGIKKLQIMLTIIDDLAS--TPIEEVLCEAPINEYVQSCDIVAFNKI 216          
The following BLAST results are available for this feature:
BLAST of CX047265 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
EF1D2_ARATH3.092e-5456.46Elongation factor 1-delta 2 OS=Arabidopsis thalian... [more]
EF1D1_ARATH3.092e-5455.98Elongation factor 1-delta 1 OS=Arabidopsis thalian... [more]
EF1D_PIMBR1.100e-5155.17Elongation factor 1-delta OS=Pimpinella brachycarp... [more]
EF1D_BETVU1.216e-5058.17Elongation factor 1-delta OS=Beta vulgaris PE=2 SV... [more]
EF1D1_ORYSJ2.709e-5055.34Elongation factor 1-delta 1 OS=Oryza sativa subsp.... [more]
EF1D2_ORYSJ4.621e-5053.69Elongation factor 1-delta 2 OS=Oryza sativa subsp.... [more]
EF1B_ORYSJ1.946e-4094.25Elongation factor 1-beta OS=Oryza sativa subsp. ja... [more]
EF1B2_ARATH4.793e-3945.81Elongation factor 1-beta 2 OS=Arabidopsis thaliana... [more]
EF1B1_ARATH4.793e-3947.32Elongation factor 1-beta 1 OS=Arabidopsis thaliana... [more]
EF1B_WHEAT7.162e-3586.21Elongation factor 1-beta OS=Triticum aestivum PE=1... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_13B03_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-13B03-C6-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047265 ID=CX047265; Name=CX047265; organism=Citrus sinensis; type=EST; length=882bp
TTTTTAAACAACTCAAAATGGGCAAAGCCGCTCTCAATCATTAATGCTCT
AAAGAGTTCTGCATTGCAGATATAGCATACCAACTTCAGTCACAGTTAAA
AAACTCCAAAGAGACAGCATCCATAGAAGAACAAATCCATAATGGAACAC
ACAAGACTCCTGAAACAAAAATAAAAATTATAAAATAAATATCACTTTGC
TATGATCATTATCCAAGACAAAATCCCCGGAAGCCTCTCTAGCACCCACT
TTGCCAAAGGATCCACAAATTAGATTTTGTTGAAGGCTACAATATCACAG
CTCTGGACATATTCATTAATTGGTTCTTCCAGCAGGTGTTCCTCAATGAG
GGTGTCAACAGACACCAAGTCATCCACAATTGTAAGCATTATTTGCAATT
TCTTGATACCATATCCAACAGGTGCAAGTTTGCTGGCTCCCCAGAGTAAT
CCTTCCATCTGAACACTTCTTACTGCTTCCTCAAGCTTCTTCATGTCAGT
CTCATCATCCCAAGGCTTCACATCCAATAGAACTGATGACTTGCCAGATT
CTTTCTTTTTGGCTGATGCTTTGACGGAAGCCGCGCGTGCCTCGGCAGCC
TTCTTTTCCTCTTCTGTCTCCTCACCAAATAGATCCACATCATCGTCGTC
ATCATCAGGAGCTGCTGCCTTTGAGTCAGCTACCGGGGGAGTAGCAACAG
GAGCAGATCCCTCTACAGTGACACCAGAGCCTTCACCAGTAACGCCAGAG
ATCCTTAAGAGTGCATCAATATGCTTGTACCACCGAGACACATTGACATA
TTCAGATGATGGTGCTTTTGAAAGAGCTGAATACACAGTGATATCATCCT
TTGAAGCTTGGTACCCAGTAATGTAACTGCGA
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