CX047252

Overview
NameCX047252
Unique NameCX047252
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length821
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3837 contig Csv1_Contig3837:1..821. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX047252 vs. ExPASy Swiss-Prot
Match: PP287_ARATH (Pentatricopeptide repeat-containing protein At3g59040 OS=Arabidopsis thaliana GN=At3g59040 PE=2 SV=2)

HSP 1 Score: 355.14 bits (910), Expect = 2.648e-97
Identity = 174/256 (67.97%), Postives = 211/256 (82.42%), Query Frame = 1
Query:   55 MPQTLFLKPFISPSSINFSQQNVPVSPLDANLKVHRRVGVICMGMLAPRKFMQKRRKVEVFKDAADEAEKKNWRRLMNQIEEVGSAVAVLRSERTRG-QPLPKDLVLGTLVRLKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYNNAEAIFRRMQSSGPRPSALTYHIILKLFVEANKFKEAEEVVMTLLDEEKSPLKPDQRMFHMMIYM 819
            M Q +  KPF+S  S N SQ+ +  + ++  +K+  R  V+CMGMLAPRKF+QKRRK+EVFKDAADE ++K WR LM +IE  GSAV VLR  +T G Q LP+DLVLGTLVR KQLKKWN+VSE+LEWLR Q+WW+F+E+DFLMLITAYGK G+FN AE+VLS ++K G  P+V+S+TALME+YGRGG+ NNAEAIFRRMQSSGP PSA+TY IILK FVE +KFKEAEEV  TLLDE+KSPLKPDQ+M+HMMIYM
Sbjct:    1 MSQAVIFKPFVSVPSSNHSQRKLQNNIINVGVKIQNRFRVVCMGMLAPRKFLQKRRKMEVFKDAADETDQKRWRGLMLEIESTGSAVPVLRQYKTDGDQGLPRDLVLGTLVRFKQLKKWNLVSEILEWLRYQNWWNFSEIDFLMLITAYGKLGNFNGAERVLSVLSKMGSTPNVISYTALMESYGRGGKCNNAEAIFRRMQSSGPEPSAITYQIILKTFVEGDKFKEAEEVFETLLDEKKSPLKPDQKMYHMMIYM 256          
BLAST of CX047252 vs. ExPASy Swiss-Prot
Match: PP216_ARATH (Pentatricopeptide repeat-containing protein At3g06430, chloroplastic OS=Arabidopsis thaliana GN=EMB2750 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.950e-11
Identity = 57/207 (27.54%), Postives = 98/207 (47.34%), Query Frame = 1
Query:  157 HRRVGVICMGMLAPRKFMQKRRKVEVFKDAADEAEKKNWRRLMNQIEEVGSAVAVLRSERTRGQPLPKDLVLGTLVRLKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYNNAEAIFRRMQSSGP-RPSALTYHIILKLFVEANKF-------KEAEEVVMT 753
            HR VG++   + A +       K  ++KD       +   +    I+ V   +   R  +  G     + V  TL  L   K+W    EV + LR Q+++   E  ++ L+   GK G  N+A+K+   M ++G  P+V  +TAL+ AY R    ++A +I  +M+S    +P   TY  +LK  V+A++F       KE +E ++T
Sbjct:   26 HRDVGIVRCVLAASKSSPGSVTKKRLWKDGEFPGITEPVNQRRTPIKNVKKKLD--RRSKANGWV---NTVTETLSDLIAKKQWLQALEVFDMLREQTFYQPKEGTYMKLLVLLGKSGQPNRAQKLFDEMLEEGLEPTVELYTALLAAYTRSNLIDDAFSILDKMKSFPQCQPDVFTYSTLLKACVDASQFDLVDSLYKEMDERLIT 227          
BLAST of CX047252 vs. ExPASy Swiss-Prot
Match: PP124_ARATH (Pentatricopeptide repeat-containing protein At1g74850, chloroplastic OS=Arabidopsis thaliana GN=PTAC2 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.444e-11
Identity = 35/112 (31.25%), Postives = 60/112 (53.57%), Query Frame = 1
Query:  481 MLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYNNAEAIFRRMQSSGPRPSALTYHIILKLFVEANKFKEAEEVVMTLLDEEKSPLKPDQRMFHMMIY 816
            +L+ AY K G   +A  V   M   G  P+  +++ L+  +G+ GRY++   +F  M+SS   P A TY+I++++F E   FK   EVV    D  +  ++PD   +  +I+
Sbjct:  322 VLLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFGQSGRYDDVRQLFLEMKSSNTDPDAATYNILIEVFGEGGYFK---EVVTLFHDMVEENIEPDMETYEGIIF 430          
The following BLAST results are available for this feature:
BLAST of CX047252 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
PP287_ARATH2.648e-9767.97Pentatricopeptide repeat-containing protein At3g59... [more]
PP216_ARATH4.950e-1127.54Pentatricopeptide repeat-containing protein At3g06... [more]
PP124_ARATH8.444e-1131.25Pentatricopeptide repeat-containing protein At1g74... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS09_13A08_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-13A08-A16-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047252 ID=CX047252; Name=CX047252; organism=Citrus sinensis; type=EST; length=821bp
AGAATAACGAAGCTTAAAAAATTCAAAGCTTAGTTTTAGCGTCATAAGAG
CTCAATGCCTCAAACTCTGTTCCTCAAGCCATTCATTTCACCTTCTTCAA
TTAATTTCAGCCAACAGAATGTACCGGTTAGTCCACTTGATGCCAATCTT
AAAGTTCACCGGAGAGTTGGGGTAATTTGCATGGGCATGTTAGCACCGAG
AAAGTTTATGCAGAAGAGGAGGAAAGTGGAAGTGTTCAAAGATGCAGCTG
ATGAAGCTGAGAAGAAGAATTGGAGGAGACTGATGAATCAAATTGAAGAA
GTAGGTTCTGCTGTTGCGGTGCTCAGAAGCGAAAGAACCAGAGGCCAGCC
TCTTCCAAAAGATCTTGTTTTGGGCACTTTGGTTAGATTAAAGCAGCTAA
AGAAGTGGAATGTTGTTAGTGAGGTACTCGAATGGCTTCGGATTCAGAGT
TGGTGGGACTTCAATGAAATGGATTTCTTGATGCTTATTACAGCATATGG
AAAGCAGGGGGACTTCAACAAGGCTGAGAAGGTTTTAAGTTTTATGAACA
AGAAGGGTTATGCGCCAAGTGTTGTGTCTCATACTGCTCTTATGGAAGCG
TATGGAAGAGGAGGCCGATACAACAATGCTGAGGCTATATTTCGAAGAAT
GCAGTCATCTGGCCCCCGACCTTCTGCTTTAACATATCACATTATACTCA
AATTATTTGTTGAGGCTAACAAGTTTAAGGAAGCTGAAGAAGTTGTCATG
ACACTCTTGGATGAGGAAAAATCACCACTGAAGCCAGACCAGAGAATGTT
CCACATGATGATCTATATGTA
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