CX047239

Overview
NameCX047239
Unique NameCX047239
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length877
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4016 contig Csv1_Contig4016:316..1192. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX047239 vs. ExPASy Swiss-Prot
Match: U326_ARATH (UPF0326 protein At4g17486 OS=Arabidopsis thaliana GN=At4g17486 PE=2 SV=1)

HSP 1 Score: 244.588 bits (623), Expect = 5.591e-64
Identity = 116/179 (64.80%), Postives = 142/179 (79.33%), Query Frame = -2
Query:  340 LGIFHSGIEAHGLEYGFGAHEYRTSGVFEVEPKSCPGFIFRRSVLLGTTNLSRAEFRSFMEHLSGKYHGDTYHLIAKNCNHFTEEVCMQLTGKCIPGWVNRMARLGSFCNCLLPESIQITAVAHLPDRPTYSDDDILXXXXXXXXXXXXXXXXAVHHLLTAPNSDGSFLKEKPVRRTKE 876
            +GIFHSGIEAH LEY +GAHEY TSGV+EVEP++CPGFIFRRSVLLGTT++SR++FRS+ME LS KYHGDTYHLIAKNCNHFTEEVC+QLTGK IPGW+NR+AR+GSFCNCLLPESIQ+TAV+ LP+R  +SD+D                  +  HL+   + +  +L+ KPVR T+E
Sbjct:   47 IGIFHSGIEAHNLEYCYGAHEYPTSGVYEVEPRNCPGFIFRRSVLLGTTSMSRSDFRSYMEKLSRKYHGDTYHLIAKNCNHFTEEVCLQLTGKPIPGWINRLARVGSFCNCLLPESIQLTAVSALPERLEFSDED----ESNSEASSVSDEEGSEQHLINVADREIVYLQNKPVRLTRE 221          
BLAST of CX047239 vs. ExPASy Swiss-Prot
Match: PPDE1_RAT (PPPDE peptidase domain-containing protein 1 OS=Rattus norvegicus GN=Pppde1 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 5.853e-21
Identity = 49/122 (40.16%), Postives = 72/122 (59.02%), Query Frame = -2
Query:  532 LGIFHSGIEAHGLEYGFGAHEYRTSGVFEVEPKSCPG----FIFRRSVLLGTTNLSRAEFRSFMEHLSGKYHGDTYHLIAKNCNHFTEEVCMQLTGKCIPGWVNRMARLGS---FCNCLLPE 876
            +G+FHSGIE +G E+ +G H Y  SG+FE+ P +       F F+ +V+LG+T+    +    +E L  +Y G+ YHL+ KNCNHF+  +   L GK IP W+NR+A   S   F    LP+
Sbjct:   26 IGVFHSGIEVYGREFAYGGHPYPFSGIFEISPGNAAELGETFKFKEAVVLGSTDFLEDDIEKIVEELGKEYKGNAYHLMHKNCNHFSSALSEILCGKEIPRWINRLAYFSSCIPFLQSCLPK 147          
BLAST of CX047239 vs. ExPASy Swiss-Prot
Match: PPDE1_PONAB (PPPDE peptidase domain-containing protein 1 OS=Pongo abelii GN=PPPDE1 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 5.853e-21
Identity = 49/122 (40.16%), Postives = 72/122 (59.02%), Query Frame = -2
Query:  532 LGIFHSGIEAHGLEYGFGAHEYRTSGVFEVEPKSCPG----FIFRRSVLLGTTNLSRAEFRSFMEHLSGKYHGDTYHLIAKNCNHFTEEVCMQLTGKCIPGWVNRMARLGS---FCNCLLPE 876
            +G+FHSGIE +G E+ +G H Y  SG+FE+ P +       F F+ +V+LG+T+    +    +E L  +Y G+ YHL+ KNCNHF+  +   L GK IP W+NR+A   S   F    LP+
Sbjct:   26 IGVFHSGIEVYGREFAYGGHPYPFSGIFEISPGNASELGETFKFKEAVVLGSTDFLEDDIEKIVEELGKEYKGNAYHLMHKNCNHFSSALSEILCGKEIPRWINRLAYFSSCIPFLQSCLPK 147          
BLAST of CX047239 vs. ExPASy Swiss-Prot
Match: PPDE1_PIG (PPPDE peptidase domain-containing protein 1 OS=Sus scrofa GN=PPPDE1 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 5.853e-21
Identity = 49/122 (40.16%), Postives = 72/122 (59.02%), Query Frame = -2
Query:  532 LGIFHSGIEAHGLEYGFGAHEYRTSGVFEVEPKSCPG----FIFRRSVLLGTTNLSRAEFRSFMEHLSGKYHGDTYHLIAKNCNHFTEEVCMQLTGKCIPGWVNRMARLGS---FCNCLLPE 876
            +G+FHSGIE +G E+ +G H Y  SG+FE+ P +       F F+ +V+LG+T+    +    +E L  +Y G+ YHL+ KNCNHF+  +   L GK IP W+NR+A   S   F    LP+
Sbjct:   26 IGVFHSGIEVYGREFAYGGHPYPFSGIFEISPGNASELGETFKFKEAVVLGSTDFLEDDIEKIVEELGKEYKGNAYHLMHKNCNHFSSALSEILCGKEIPRWINRLAYFSSCIPFLQSCLPK 147          
BLAST of CX047239 vs. ExPASy Swiss-Prot
Match: PPDE1_MOUSE (PPPDE peptidase domain-containing protein 1 OS=Mus musculus GN=Pppde1 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 5.853e-21
Identity = 49/122 (40.16%), Postives = 72/122 (59.02%), Query Frame = -2
Query:  532 LGIFHSGIEAHGLEYGFGAHEYRTSGVFEVEPKSCPG----FIFRRSVLLGTTNLSRAEFRSFMEHLSGKYHGDTYHLIAKNCNHFTEEVCMQLTGKCIPGWVNRMARLGS---FCNCLLPE 876
            +G+FHSGIE +G E+ +G H Y  SG+FE+ P +       F F+ +V+LG+T+    +    +E L  +Y G+ YHL+ KNCNHF+  +   L GK IP W+NR+A   S   F    LP+
Sbjct:   26 IGVFHSGIEVYGREFAYGGHPYPFSGIFEISPGNASELGETFKFKEAVVLGSTDFLEDDIEKIVEELGKEYKGNAYHLMHKNCNHFSSALSEILCGKEIPRWINRLAYFSSCIPFLQSCLPK 147          
BLAST of CX047239 vs. ExPASy Swiss-Prot
Match: PPDE1_HUMAN (PPPDE peptidase domain-containing protein 1 OS=Homo sapiens GN=PPPDE1 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 5.853e-21
Identity = 49/122 (40.16%), Postives = 72/122 (59.02%), Query Frame = -2
Query:  532 LGIFHSGIEAHGLEYGFGAHEYRTSGVFEVEPKSCPG----FIFRRSVLLGTTNLSRAEFRSFMEHLSGKYHGDTYHLIAKNCNHFTEEVCMQLTGKCIPGWVNRMARLGS---FCNCLLPE 876
            +G+FHSGIE +G E+ +G H Y  SG+FE+ P +       F F+ +V+LG+T+    +    +E L  +Y G+ YHL+ KNCNHF+  +   L GK IP W+NR+A   S   F    LP+
Sbjct:   26 IGVFHSGIEVYGREFAYGGHPYPFSGIFEISPGNASELGETFKFKEAVVLGSTDFLEDDIEKIVEELGKEYKGNAYHLMHKNCNHFSSALSEILCGKEIPRWINRLAYFSSCIPFLQSCLPK 147          
BLAST of CX047239 vs. ExPASy Swiss-Prot
Match: PPDE1_CHICK (PPPDE peptidase domain-containing protein 1 OS=Gallus gallus GN=PPPDE1 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 9.984e-21
Identity = 49/122 (40.16%), Postives = 72/122 (59.02%), Query Frame = -2
Query:  532 LGIFHSGIEAHGLEYGFGAHEYRTSGVFEVEPKSCPG----FIFRRSVLLGTTNLSRAEFRSFMEHLSGKYHGDTYHLIAKNCNHFTEEVCMQLTGKCIPGWVNRMARLGS---FCNCLLPE 876
            +G+FHSGIE +G E+ +G H Y  SG+FE+ P +       F F+ +V+LG+T+    +    +E L  ++ G+ YHL+ KNCNHF+  +   L GK IP WVNR+A   S   F    LP+
Sbjct:   25 IGVFHSGIEVYGREFAYGGHPYPFSGIFEISPGNASELGETFKFKEAVVLGSTDFMEDDIEKIVEELGKEFKGNAYHLMHKNCNHFSSALSEILCGKEIPRWVNRLAYFSSCIPFLQSCLPK 146          
BLAST of CX047239 vs. ExPASy Swiss-Prot
Match: PPDE1_XENLA (PPPDE peptidase domain-containing protein 1 OS=Xenopus laevis GN=pppde1 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.905e-20
Identity = 45/107 (42.06%), Postives = 66/107 (61.68%), Query Frame = -2
Query:  568 LGIFHSGIEAHGLEYGFGAHEYRTSGVFEVEPKSCPG----FIFRRSVLLGTTNLSRAEFRSFMEHLSGKYHGDTYHLIAKNCNHFTEEVCMQLTGKCIPGWVNRMA 876
            +G+FHSGI+ +G E+ +G H Y  SGVFE+ P         F F+ ++ LG+T+ +  +    +E L  +Y G+ YHL+ KNCNHF+  +   L GK IP WVNR+A
Sbjct:   25 IGVFHSGIQVYGREFAYGGHPYPFSGVFEISPGDSTELGDTFKFKEAIALGSTDFTENDIEKIIEELGKEYKGNAYHLMHKNCNHFSSALSEILCGKEIPRWVNRLA 131          
BLAST of CX047239 vs. ExPASy Swiss-Prot
Match: PPDE1_DANRE (PPPDE peptidase domain-containing protein 1 OS=Danio rerio GN=pppde1 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.905e-20
Identity = 47/122 (38.52%), Postives = 72/122 (59.02%), Query Frame = -2
Query:  532 LGIFHSGIEAHGLEYGFGAHEYRTSGVFEVEPKSCPG----FIFRRSVLLGTTNLSRAEFRSFMEHLSGKYHGDTYHLIAKNCNHFTEEVCMQLTGKCIPGWVNRMARLGS---FCNCLLPE 876
            +G+FHSGIE +G E+ +G H Y  SG+FE+ P         F F+ +++LG+T+ +  +    +E +  +Y G+ YHL+ KNCNHF+  +   L G+ IP WVNR+A   S   F    LP+
Sbjct:   25 IGVFHSGIEIYGREFAYGGHPYPFSGIFEITPGDATELGETFKFKEAIVLGSTDFTEEDVERIVEEMGKEYKGNAYHLMHKNCNHFSSALSEILCGREIPRWVNRLAYFSSCVPFLQSCLPK 146          
BLAST of CX047239 vs. ExPASy Swiss-Prot
Match: HAG1_SCHPO (UPF0326 protein hag1 OS=Schizosaccharomyces pombe GN=hag1 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 8.186e-15
Identity = 43/108 (39.81%), Postives = 64/108 (59.26%), Query Frame = -2
Query:  559 LGIFHSGIEAHGLEYGFGAHEYRTS-GVFEVEPKS-CPGFIFRRSVLLGTTNLSRAEFRSFMEHLSGKYHGDTYHLIAKNCNHFTEEVCMQLTGKCIPGWVNRMARLG 876
            LGI+H+G+   G EY FGAHE   S GVF   P+    G  +R S+ L    L + +    +  LS ++ G +Y L+ +NCNHFT    ++LTG  IP ++NR++R+G
Sbjct:   25 LGIYHTGLVLEGKEYAFGAHEIPGSTGVFATMPRPPLEGCRWRCSIALPNCTLPKPDVDRILIRLSQEFTGLSYSLLERNCNHFTNAAAIELTGSPIPSFLNRISRIG 132          
The following BLAST results are available for this feature:
BLAST of CX047239 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
U326_ARATH5.591e-6464.80UPF0326 protein At4g17486 OS=Arabidopsis thaliana ... [more]
PPDE1_RAT5.853e-2140.16PPPDE peptidase domain-containing protein 1 OS=Rat... [more]
PPDE1_PONAB5.853e-2140.16PPPDE peptidase domain-containing protein 1 OS=Pon... [more]
PPDE1_PIG5.853e-2140.16PPPDE peptidase domain-containing protein 1 OS=Sus... [more]
PPDE1_MOUSE5.853e-2140.16PPPDE peptidase domain-containing protein 1 OS=Mus... [more]
PPDE1_HUMAN5.853e-2140.16PPPDE peptidase domain-containing protein 1 OS=Hom... [more]
PPDE1_CHICK9.984e-2140.16PPPDE peptidase domain-containing protein 1 OS=Gal... [more]
PPDE1_XENLA2.905e-2042.06PPPDE peptidase domain-containing protein 1 OS=Xen... [more]
PPDE1_DANRE2.905e-2038.52PPPDE peptidase domain-containing protein 1 OS=Dan... [more]
HAG1_SCHPO8.186e-1539.81UPF0326 protein hag1 OS=Schizosaccharomyces pombe ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS09_13A01_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-13A01-A2-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047239 ID=CX047239; Name=CX047239; organism=Citrus sinensis; type=EST; length=877bp
TTTTTTTTTTTGAAAAAACATATTCCTATTGGATTTGAATCTTTAGCAGA
ACCCATGGCATAAAAAGGGTTACACAGTGAGATATGCAAATCTCTGCTGA
TTGATGATATTTCTAGGCTGAATGCTAAACATAATGATACATAAGGAGAA
ACACAGGCGCAGTGAAAAAGTATTGGCAAGATAACTACAGTTCTAGGAAA
GAAGTACGGGTGAGCTCAAATTAAAGTGAGACAACAGGTCCATTGACACA
GGTGAGATTTCTATGATACAATTACAAACAACAACAGGAAGATCCAAGCC
ATAAAAGGGAATATATGGGAAGAAAAAGAATCACATTGCTTCCTTTGTTC
GCCTCACTGGTTTTTCTTTTAGAAAAGAACCATCACTATTTGGTGCAGTC
AGCAGATGATGAACTGCCGCCTCTTCTTCTTCACTCTCTGCTGTTATAGA
AGATGTGGGAGATTCCAATATATCATCATCAGAATATGTGGGACGATCAG
GAAGATGTGCAACTGCTGTGATCTGAATACTCTCTGGCAGCAGACAATTG
CAGAATGAACCTAATCGAGCCATCCGATTAACCCATCCTGGAATACACTT
TCCAGTTAGCTGCATACAGACTTCTTCTGTAAAATGGTTACAATTCTTGG
CAATCAAATGATAAGTGTCCCCATGATATTTTCCAGAAAGGTGTTCCATG
AAGGAGCGAAATTCTGCACGAGACAGGTTGGTGGTACCCAGCAACACTGA
CCGTCTGAAGATGAAGCCAGGACAACTTTTCGGTTCAACTTCAAAAACTC
CACTGGTACGGTACTCATGAGCACCAAAGCCATATTCCAAACCATGAGCT
TCGATACCCGAATGGAATATCCCGAGC
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