CX047238

Overview
NameCX047238
Unique NameCX047238
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length785
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX047238_ssr22 microsatellite CX047238_ssr22:22..49. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig4016 contig Csv1_Contig4016:40..824. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX047238 vs. ExPASy Swiss-Prot
Match: U326_ARATH (UPF0326 protein At4g17486 OS=Arabidopsis thaliana GN=At4g17486 PE=2 SV=1)

HSP 1 Score: 279.256 bits (713), Expect = 1.706e-74
Identity = 127/170 (74.71%), Postives = 150/170 (88.24%), Query Frame = 2
Query:  182 TKEQNSRGSNHALL---YLNVYDLTPLNNYLYWFGLGIFHSGIEAHGLEYGFGAHEYRTSGVFEVEPKSCPGFIFRRSVLLGTTNLSRAEFRSFMEHLSGKYHGDTYHLIAKNCNHFTEEVCMQLTGKCIPGWVNRMARLGSFCNCLLPESIQITAVAHLPDRPTYSDDD 682
            + ++    S  A L   YLNVYDLTP+NNYLYWFG+GIFHSGIEAH LEY +GAHEY TSGV+EVEP++CPGFIFRRSVLLGTT++SR++FRS+ME LS KYHGDTYHLIAKNCNHFTEEVC+QLTGK IPGW+NR+AR+GSFCNCLLPESIQ+TAV+ LP+R  +SD+D
Sbjct:   12 SSDERDESSGEAALTPVYLNVYDLTPVNNYLYWFGIGIFHSGIEAHNLEYCYGAHEYPTSGVYEVEPRNCPGFIFRRSVLLGTTSMSRSDFRSYMEKLSRKYHGDTYHLIAKNCNHFTEEVCLQLTGKPIPGWINRLARVGSFCNCLLPESIQLTAVSALPERLEFSDED 181          
BLAST of CX047238 vs. ExPASy Swiss-Prot
Match: PPDE1_RAT (PPPDE peptidase domain-containing protein 1 OS=Rattus norvegicus GN=Pppde1 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 5.034e-26
Identity = 60/147 (40.82%), Postives = 87/147 (59.18%), Query Frame = 2
Query:  203 GSNHALLYLNVYDLTPLNNYLYWFGLGIFHSGIEAHGLEYGFGAHEYRTSGVFEVEPKSCPG----FIFRRSVLLGTTNLSRAEFRSFMEHLSGKYHGDTYHLIAKNCNHFTEEVCMQLTGKCIPGWVNRMARLGS---FCNCLLPE 622
            G+N  L+ LNVYD+  +N Y    G+G+FHSGIE +G E+ +G H Y  SG+FE+ P +       F F+ +V+LG+T+    +    +E L  +Y G+ YHL+ KNCNHF+  +   L GK IP W+NR+A   S   F    LP+
Sbjct:    2 GANQ-LVVLNVYDMYWMNEYTSSIGIGVFHSGIEVYGREFAYGGHPYPFSGIFEISPGNAAELGETFKFKEAVVLGSTDFLEDDIEKIVEELGKEYKGNAYHLMHKNCNHFSSALSEILCGKEIPRWINRLAYFSSCIPFLQSCLPK 147          
BLAST of CX047238 vs. ExPASy Swiss-Prot
Match: PPDE1_PONAB (PPPDE peptidase domain-containing protein 1 OS=Pongo abelii GN=PPPDE1 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 5.034e-26
Identity = 60/147 (40.82%), Postives = 87/147 (59.18%), Query Frame = 2
Query:  203 GSNHALLYLNVYDLTPLNNYLYWFGLGIFHSGIEAHGLEYGFGAHEYRTSGVFEVEPKSCPG----FIFRRSVLLGTTNLSRAEFRSFMEHLSGKYHGDTYHLIAKNCNHFTEEVCMQLTGKCIPGWVNRMARLGS---FCNCLLPE 622
            G+N  L+ LNVYD+  +N Y    G+G+FHSGIE +G E+ +G H Y  SG+FE+ P +       F F+ +V+LG+T+    +    +E L  +Y G+ YHL+ KNCNHF+  +   L GK IP W+NR+A   S   F    LP+
Sbjct:    2 GANQ-LVVLNVYDMYWMNEYTSSIGIGVFHSGIEVYGREFAYGGHPYPFSGIFEISPGNASELGETFKFKEAVVLGSTDFLEDDIEKIVEELGKEYKGNAYHLMHKNCNHFSSALSEILCGKEIPRWINRLAYFSSCIPFLQSCLPK 147          
BLAST of CX047238 vs. ExPASy Swiss-Prot
Match: PPDE1_PIG (PPPDE peptidase domain-containing protein 1 OS=Sus scrofa GN=PPPDE1 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 5.034e-26
Identity = 60/147 (40.82%), Postives = 87/147 (59.18%), Query Frame = 2
Query:  203 GSNHALLYLNVYDLTPLNNYLYWFGLGIFHSGIEAHGLEYGFGAHEYRTSGVFEVEPKSCPG----FIFRRSVLLGTTNLSRAEFRSFMEHLSGKYHGDTYHLIAKNCNHFTEEVCMQLTGKCIPGWVNRMARLGS---FCNCLLPE 622
            G+N  L+ LNVYD+  +N Y    G+G+FHSGIE +G E+ +G H Y  SG+FE+ P +       F F+ +V+LG+T+    +    +E L  +Y G+ YHL+ KNCNHF+  +   L GK IP W+NR+A   S   F    LP+
Sbjct:    2 GANQ-LVVLNVYDMYWMNEYTSSIGIGVFHSGIEVYGREFAYGGHPYPFSGIFEISPGNASELGETFKFKEAVVLGSTDFLEDDIEKIVEELGKEYKGNAYHLMHKNCNHFSSALSEILCGKEIPRWINRLAYFSSCIPFLQSCLPK 147          
BLAST of CX047238 vs. ExPASy Swiss-Prot
Match: PPDE1_MOUSE (PPPDE peptidase domain-containing protein 1 OS=Mus musculus GN=Pppde1 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 5.034e-26
Identity = 60/147 (40.82%), Postives = 87/147 (59.18%), Query Frame = 2
Query:  203 GSNHALLYLNVYDLTPLNNYLYWFGLGIFHSGIEAHGLEYGFGAHEYRTSGVFEVEPKSCPG----FIFRRSVLLGTTNLSRAEFRSFMEHLSGKYHGDTYHLIAKNCNHFTEEVCMQLTGKCIPGWVNRMARLGS---FCNCLLPE 622
            G+N  L+ LNVYD+  +N Y    G+G+FHSGIE +G E+ +G H Y  SG+FE+ P +       F F+ +V+LG+T+    +    +E L  +Y G+ YHL+ KNCNHF+  +   L GK IP W+NR+A   S   F    LP+
Sbjct:    2 GANQ-LVVLNVYDMYWMNEYTSSIGIGVFHSGIEVYGREFAYGGHPYPFSGIFEISPGNASELGETFKFKEAVVLGSTDFLEDDIEKIVEELGKEYKGNAYHLMHKNCNHFSSALSEILCGKEIPRWINRLAYFSSCIPFLQSCLPK 147          
BLAST of CX047238 vs. ExPASy Swiss-Prot
Match: PPDE1_HUMAN (PPPDE peptidase domain-containing protein 1 OS=Homo sapiens GN=PPPDE1 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 5.034e-26
Identity = 60/147 (40.82%), Postives = 87/147 (59.18%), Query Frame = 2
Query:  203 GSNHALLYLNVYDLTPLNNYLYWFGLGIFHSGIEAHGLEYGFGAHEYRTSGVFEVEPKSCPG----FIFRRSVLLGTTNLSRAEFRSFMEHLSGKYHGDTYHLIAKNCNHFTEEVCMQLTGKCIPGWVNRMARLGS---FCNCLLPE 622
            G+N  L+ LNVYD+  +N Y    G+G+FHSGIE +G E+ +G H Y  SG+FE+ P +       F F+ +V+LG+T+    +    +E L  +Y G+ YHL+ KNCNHF+  +   L GK IP W+NR+A   S   F    LP+
Sbjct:    2 GANQ-LVVLNVYDMYWMNEYTSSIGIGVFHSGIEVYGREFAYGGHPYPFSGIFEISPGNASELGETFKFKEAVVLGSTDFLEDDIEKIVEELGKEYKGNAYHLMHKNCNHFSSALSEILCGKEIPRWINRLAYFSSCIPFLQSCLPK 147          
BLAST of CX047238 vs. ExPASy Swiss-Prot
Match: PPDE1_CHICK (PPPDE peptidase domain-containing protein 1 OS=Gallus gallus GN=PPPDE1 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.121e-25
Identity = 58/142 (40.85%), Postives = 84/142 (59.15%), Query Frame = 2
Query:  218 LLYLNVYDLTPLNNYLYWFGLGIFHSGIEAHGLEYGFGAHEYRTSGVFEVEPKSCPG----FIFRRSVLLGTTNLSRAEFRSFMEHLSGKYHGDTYHLIAKNCNHFTEEVCMQLTGKCIPGWVNRMARLGS---FCNCLLPE 622
            L+ LNVYD+  +N Y    G+G+FHSGIE +G E+ +G H Y  SG+FE+ P +       F F+ +V+LG+T+    +    +E L  ++ G+ YHL+ KNCNHF+  +   L GK IP WVNR+A   S   F    LP+
Sbjct:    5 LVILNVYDMYWMNEYTSSLGIGVFHSGIEVYGREFAYGGHPYPFSGIFEISPGNASELGETFKFKEAVVLGSTDFMEDDIEKIVEELGKEFKGNAYHLMHKNCNHFSSALSEILCGKEIPRWVNRLAYFSSCIPFLQSCLPK 146          
BLAST of CX047238 vs. ExPASy Swiss-Prot
Match: PPDE1_XENLA (PPPDE peptidase domain-containing protein 1 OS=Xenopus laevis GN=pppde1 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 7.269e-25
Identity = 53/126 (42.06%), Postives = 77/126 (61.11%), Query Frame = 2
Query:  221 LYLNVYDLTPLNNYLYWFGLGIFHSGIEAHGLEYGFGAHEYRTSGVFEVEPKSCPG----FIFRRSVLLGTTNLSRAEFRSFMEHLSGKYHGDTYHLIAKNCNHFTEEVCMQLTGKCIPGWVNRMA 586
            + LNVYD+  +N Y    G+G+FHSGI+ +G E+ +G H Y  SGVFE+ P         F F+ ++ LG+T+ +  +    +E L  +Y G+ YHL+ KNCNHF+  +   L GK IP WVNR+A
Sbjct:    6 IILNVYDMYWINEYTSSLGIGVFHSGIQVYGREFAYGGHPYPFSGVFEISPGDSTELGDTFKFKEAIALGSTDFTENDIEKIIEELGKEYKGNAYHLMHKNCNHFSSALSEILCGKEIPRWVNRLA 131          
BLAST of CX047238 vs. ExPASy Swiss-Prot
Match: PPDE1_DANRE (PPPDE peptidase domain-containing protein 1 OS=Danio rerio GN=pppde1 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.762e-24
Identity = 54/139 (38.85%), Postives = 82/139 (58.99%), Query Frame = 2
Query:  227 LNVYDLTPLNNYLYWFGLGIFHSGIEAHGLEYGFGAHEYRTSGVFEVEPKSCPG----FIFRRSVLLGTTNLSRAEFRSFMEHLSGKYHGDTYHLIAKNCNHFTEEVCMQLTGKCIPGWVNRMARLGS---FCNCLLPE 622
            LNVYD+  +N +    G+G+FHSGIE +G E+ +G H Y  SG+FE+ P         F F+ +++LG+T+ +  +    +E +  +Y G+ YHL+ KNCNHF+  +   L G+ IP WVNR+A   S   F    LP+
Sbjct:    8 LNVYDMYWINEFTSSLGIGVFHSGIEIYGREFAYGGHPYPFSGIFEITPGDATELGETFKFKEAIVLGSTDFTEEDVERIVEEMGKEYKGNAYHLMHKNCNHFSSALSEILCGREIPRWVNRLAYFSSCVPFLQSCLPK 146          
BLAST of CX047238 vs. ExPASy Swiss-Prot
Match: HAG1_SCHPO (UPF0326 protein hag1 OS=Schizosaccharomyces pombe GN=hag1 PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 9.195e-20
Identity = 52/130 (40.00%), Postives = 78/130 (60.00%), Query Frame = 2
Query:  221 LYLNVYDL---TPLNNYLYWFGLGIFHSGIEAHGLEYGFGAHEYRTS-GVFEVEPKS-CPGFIFRRSVLLGTTNLSRAEFRSFMEHLSGKYHGDTYHLIAKNCNHFTEEVCMQLTGKCIPGWVNRMARLG 595
            +Y+NVYDL   +P+N   +  GLGI+H+G+   G EY FGAHE   S GVF   P+    G  +R S+ L    L + +    +  LS ++ G +Y L+ +NCNHFT    ++LTG  IP ++NR++R+G
Sbjct:    3 VYINVYDLMPDSPVNKLAWTLGLGIYHTGLVLEGKEYAFGAHEIPGSTGVFATMPRPPLEGCRWRCSIALPNCTLPKPDVDRILIRLSQEFTGLSYSLLERNCNHFTNAAAIELTGSPIPSFLNRISRIG 132          
The following BLAST results are available for this feature:
BLAST of CX047238 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
U326_ARATH1.706e-7474.71UPF0326 protein At4g17486 OS=Arabidopsis thaliana ... [more]
PPDE1_RAT5.034e-2640.82PPPDE peptidase domain-containing protein 1 OS=Rat... [more]
PPDE1_PONAB5.034e-2640.82PPPDE peptidase domain-containing protein 1 OS=Pon... [more]
PPDE1_PIG5.034e-2640.82PPPDE peptidase domain-containing protein 1 OS=Sus... [more]
PPDE1_MOUSE5.034e-2640.82PPPDE peptidase domain-containing protein 1 OS=Mus... [more]
PPDE1_HUMAN5.034e-2640.82PPPDE peptidase domain-containing protein 1 OS=Hom... [more]
PPDE1_CHICK1.121e-2540.85PPPDE peptidase domain-containing protein 1 OS=Gal... [more]
PPDE1_XENLA7.269e-2542.06PPPDE peptidase domain-containing protein 1 OS=Xen... [more]
PPDE1_DANRE2.762e-2438.85PPPDE peptidase domain-containing protein 1 OS=Dan... [more]
HAG1_SCHPO9.195e-2040.00UPF0326 protein hag1 OS=Schizosaccharomyces pombe ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS09_13A01_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-13A01-A2-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047238 ID=CX047238; Name=CX047238; organism=Citrus sinensis; type=EST; length=785bp
GAAGCTTAAGCACTATCCTCGCTCTCTCTCTCTCTCTCTCTCTCTCTCTT
TCTCCGATCACAGCTCAATTTGATCTCTCTTTGATGTATGATGATGAGCT
GCTGATTTAGAATTAAACCATTTGGGGGAGTGGTTTCTGAATACAATGCG
GTTCTTCTCATCAAGCTCAAGCTTTAGTCTGACAAAGGAGCAGAATAGCA
GAGGGAGCAATCATGCATTGTTGTATCTCAATGTCTATGATCTTACACCA
CTGAACAACTACCTTTACTGGTTTGGGCTCGGGATATTCCATTCGGGTAT
CGAAGCTCATGGTTTGGAATATGGCTTTGGTGCTCATGAGTACCGTACCA
GTGGAGTTTTTGAAGTTGAACCGAAAAGTTGTCCTGGCTTCATCTTCAGA
CGGTCAGTGTTGCTGGGTACCACCAACCTGTCTCGTGCAGAATTTCGCTC
CTTCATGGAACACCTTTCTGGAAAATATCATGGGGACACTTATCATTTGA
TTGCCAAGAATTGTAACCATTTTACAGAAGAAGTCTGTATGCAGCTAACT
GGAAAGTGTATTCCAGGATGGGTTAATCGGATGGCTCGATTAGGTTCATT
CTGCAATTGTCTGCTGCCAGAGAGTATTCAGATCACAGCAGTTGCACATC
TTCCTGATCGTCCCACATATTCTGATGATGATATATTGGAATCTCCCACA
TCTTCTATAACAGCAGAGAGTGAAGAAGAAGAGGCGGCAGTTCATCATCT
GCTGACTGCACCAAATAGTGATGGTTCTTTTCTAA
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