CX047235

Overview
NameCX047235
Unique NameCX047235
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length861
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3835 contig Csv1_Contig3835:1..861. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX047235 vs. ExPASy Swiss-Prot
Match: ERD22_CAEEL (Putative ER lumen protein retaining receptor C28H8.4 OS=Caenorhabditis elegans GN=C28H8.4 PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.176e-26
Identity = 69/224 (30.80%), Postives = 121/224 (54.02%), Query Frame = -3
Query:  167 FFVASEAIHAAGIMVLIYKLTTKNTCSGLSLKTQELTAMFLALRLVCSIIMEADIH-TVLDFATLASTAWVIYMIRFKLKSTYIKELDNFPIYYIAVPSAILAFIVHPSNRLINLSGILWAFCVYVESVSVLPQLRLMQNAKMIEPFTSHYVFALGVARFLSFAHWILQLIETRGRYLFLLGHGYLWFPVAFLAEMIQTFILADFCYYYIKSLKEGQLLMRMPI 835
            F ++++  H   I++L+ K+    +CSG+S ++Q L A+    R +        ++ T +    LA+T   +Y++ FK +STY++E D F +  + VP+AILA +++       L   LW F +Y+E+V++LPQL L+Q+    E  T+HY+FALG  R L   +WI +                 + P+  +A ++QT + ADF Y Y+  + + +  M +PI
Sbjct:    4 FRISADMSHLLAIIILLLKIWKSRSCSGISARSQILFALVFTARYLDLFSTYISLYNTTMKITFLAATYATVYLMFFKFRSTYMRESDTFRVELLIVPAAILALLINHDFAPFEL---LWTFSIYLEAVAILPQLFLLQSTGSAEVITAHYLFALGSYRALYIFNWIYRYYTED-----------YFDPIVVVAGIVQTVLYADFFYLYVTRVVQTRKGMELPI 213          
BLAST of CX047235 vs. ExPASy Swiss-Prot
Match: ERD2_PETHY (ER lumen protein retaining receptor OS=Petunia hybrida GN=ERD2 PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 6.453e-25
Identity = 68/221 (30.77%), Postives = 116/221 (52.49%), Query Frame = -3
Query:  182 FFVASEAIHAAGIMVLIYKLTTKNTCSGLSLKTQELTAMFLALRLVCSIIMEADIH-TVLDFATLASTAWVIYMIRFK--LKSTYIKELDNFPIYYIAVPSAILAFIVHPSNRLINLSGILWAFCVYVESVSVLPQLRLMQNAKMIEPFTSHYVFALGVARFLSFAHWILQLIETRGRYLFLLGHGYLWFPVAFLAEMIQTFILADFCYYYIKSLKEGQLL 835
            F +A +  H A ++VL+ K+ T  +C+G+SLKTQEL A+    R +        ++ T +    L S+  +++ +R    ++ +Y K+ D F   ++ +P  +LA ++   N       ++W F +Y+E+V++LPQL L+Q  + I+  T  Y+F LG  R     +W+        RY F   H   W  + ++A +IQT + ADF YYY +S K    L
Sbjct:    4 FRLAGDMTHLASVLVLLLKIHTIKSCAGVSLKTQELYALVFVTRYLDIFTDFISLYNTTMKLVFLGSSLSIVWYMRHHKIVRRSYDKDQDTFRHLFLVLPCLLLALVI---NEKFTFKEVMWTFSIYLEAVAILPQLVLLQRTRNIDNLTGQYIFLLGAYRSFYILNWVY-------RY-FTEPHFVHW--ITWIAGLIQTLLYADFFYYYFQSWKNNTKL 211          
BLAST of CX047235 vs. ExPASy Swiss-Prot
Match: ERD2_ENTHI (ER lumen protein retaining receptor OS=Entamoeba histolytica GN=ERD2 PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 6.453e-25
Identity = 64/216 (29.63%), Postives = 115/216 (53.24%), Query Frame = -3
Query:  191 FFVASEAIHAAGIMVLIYKLTTKNTCSGLSLKTQELTAMFLALRLVCSIIMEADIH-TVLDFATLASTAWVIYMIRFKLKSTYIKELDNFPIYYIAVPSAILAFIVHPSNRLINLSGILWAFCVYVESVSVLPQLRLMQNAKMIEPFTSHYVFALGVARFLSFAHWILQLIETRGRYLFLLGHGYLWFPVAFLAEMIQTFILADFCYYYIKSLKEG 835
            F ++++ +H   I  L+ K+ +   C G+SL++Q L  +    R +        ++ T+L    L ++A+ IY+I  + ++TY K  D   ++Y+ VP  +LAFI        +++ I W F +++E+V++LPQ+ L+++   +E   S Y+F LG+ R L   +WI         Y +     Y W P+ ++   IQT +  ++ YYYIKS  EG
Sbjct:    6 FRISADLVHLLSIYFLLTKIISHKNCIGISLRSQILFFIVWVTRYLDIFYNFYSLYNTILKIVYLTTSAYTIYLISKRFRATYDKIHDTLNVWYLIVPCIVLAFIFTED---YSITEICWTFSIFLEAVAILPQILLLRSTGEVENLNSQYIFCLGLYRALYIINWI---------YRYATEQSY-WSPLTWICGSIQTLLYVEYFYYYIKSRVEG 208          
BLAST of CX047235 vs. ExPASy Swiss-Prot
Match: ERD21_XENTR (ER lumen protein retaining receptor 1 OS=Xenopus tropicalis GN=kdelr1 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.438e-24
Identity = 73/211 (34.60%), Postives = 114/211 (54.03%), Query Frame = -3
Query:  182 HAAGIMVLIYKLTTKNTCSGLSLKTQELTAMFLALRLVCSIIMEADIH-TVLDFATLASTAWVIYMIRFKLKSTYIKELDNFPIYYIAVPSAILAFIVHPSNRLINLSGILWAFCVYVESVSVLPQLRLMQNAKMIEPFTSHYVFALGVARFLSFAHWILQLIETRGRYLFLLGHGYLWFPVAFLAEMIQTFILADFCYYYIKSLKEGQLL 811
            H + I++L+ K+    +C+G+S K+Q L A+    R +        ++ T +    +AS+   I+MI  K K+TY    D F + ++ VP+AILAF+V   N       ILW F +Y+ESV++LPQL ++      E  TSHY+FALG+ R L   +WI        RY F    G+    +A +A ++QT +  DF Y YI  + +G+ L
Sbjct:   12 HLSAILILLLKIWKSRSCAGISGKSQLLFAIVFTTRYLDLFTNFISLYNTSMKMVYVASSYATIWMIYSKFKATYDGNHDTFRVEFLIVPTAILAFLV---NHDFTPLEILWTFSIYLESVAILPQLFMVSKTGEAETITSHYLFALGIYRALYLFNWI-------WRYQF---EGFFDL-IAIVAGLVQTVLYCDFFYLYITKVLKGKKL 208          
BLAST of CX047235 vs. ExPASy Swiss-Prot
Match: ERD2_CAEBR (ER lumen protein retaining receptor OS=Caenorhabditis briggsae GN=erd-2 PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 4.183e-24
Identity = 63/210 (30.00%), Postives = 110/210 (52.38%), Query Frame = -3
Query:  209 FFVASEAIHAAGIMVLIYKLTTKNTCSGLSLKTQELTAMFLALRLVCSIIMEADIH-TVLDFATLASTAWVIYMIRFKLKSTYIKELDNFPIYYIAVPSAILAFIVHPSNRLINLSGILWAFCVYVESVSVLPQLRLMQNAKMIEPFTSHYVFALGVARFLSFAHWILQLIETRGRYLFLLGHGYLWFPVAFLAEMIQTFILADFCYYYI 835
            F + ++  HA  I++L+ K+    +C G+S ++Q L A+    R +        ++ TV+    LA +   +Y++  K K+TY +  D F I ++ +PS ILA I+   N       ++W F +Y+E+V+++PQL ++      E  T+HY+FALG  RFL   +W+ +                 + P+A +A ++QT + ADF Y YI
Sbjct:    4 FRITADLAHAVAIVILLLKIWKSRSCEGISGRSQILFAVTFFTRYLDLFTSFYSLYNTVMKVLFLAGSIGTVYLMWVKFKATYDRNNDTFRIEFLVIPSIILALII---NHEFMFMEVMWTFSIYLEAVAIMPQLFMLSRTGNAETITAHYLFALGSYRFLYIFNWVYRYYTES-----------FFDPIAVVAGIVQTVLYADFFYLYI 199          
BLAST of CX047235 vs. ExPASy Swiss-Prot
Match: ERD21_MOUSE (ER lumen protein retaining receptor 1 OS=Mus musculus GN=Kdelr1 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 7.135e-24
Identity = 72/211 (34.12%), Postives = 112/211 (53.08%), Query Frame = -3
Query:  182 HAAGIMVLIYKLTTKNTCSGLSLKTQELTAMFLALRLVCSIIMEADIH-TVLDFATLASTAWVIYMIRFKLKSTYIKELDNFPIYYIAVPSAILAFIVHPSNRLINLSGILWAFCVYVESVSVLPQLRLMQNAKMIEPFTSHYVFALGVARFLSFAHWILQLIETRGRYLFLLGHGYLWFPVAFLAEMIQTFILADFCYYYIKSLKEGQLL 811
            H   I++L+ K+    +C+G+S K+Q L A+    R +        ++ T +    +A +   ++MI  K K+TY    D F + ++ VP+AILAF+V   N       ILW F +Y+ESV++LPQL ++      E  TSHY+FALGV R L   +WI        RY F    G+    +A +A ++QT +  DF Y YI  + +G+ L
Sbjct:   12 HLLAIILLLLKIWKSRSCAGISGKSQVLFAVVFTARYLDLFTNYISLYNTCMKVVYIACSFTTVWMIYSKFKATYDGNHDTFRVEFLVVPTAILAFLV---NHDFTPLEILWTFSIYLESVAILPQLFMVSKTGEAETITSHYLFALGVYRTLYLFNWI-------WRYHF---EGFFDL-IAIVAGLVQTVLYCDFFYLYITKVLKGKKL 208          
BLAST of CX047235 vs. ExPASy Swiss-Prot
Match: ERD21_RAT (ER lumen protein retaining receptor 1 OS=Rattus norvegicus GN=Kdelr1 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 9.319e-24
Identity = 71/211 (33.65%), Postives = 112/211 (53.08%), Query Frame = -3
Query:  182 HAAGIMVLIYKLTTKNTCSGLSLKTQELTAMFLALRLVCSIIMEADIH-TVLDFATLASTAWVIYMIRFKLKSTYIKELDNFPIYYIAVPSAILAFIVHPSNRLINLSGILWAFCVYVESVSVLPQLRLMQNAKMIEPFTSHYVFALGVARFLSFAHWILQLIETRGRYLFLLGHGYLWFPVAFLAEMIQTFILADFCYYYIKSLKEGQLL 811
            H   I++L+ K+    +C+G+S K+Q L A+    R +        ++ T +    +A +   ++MI  K K+TY    D F + ++ VP+A+LAF+V   N       ILW F +Y+ESV++LPQL ++      E  TSHY+FALGV R L   +WI        RY F    G+    +A +A ++QT +  DF Y YI  + +G+ L
Sbjct:   12 HLLAIILLLLKIWKSRSCAGISGKSQVLFAVVFTARYLDLFTNYISLYNTCMKVVYIACSFTTVWMIYSKFKATYDGNHDTFRVEFLVVPTAVLAFLV---NHDFTPLEILWTFSIYLESVAILPQLFMVSKTGEAETITSHYLFALGVYRTLYLFNWI-------WRYHF---EGFFDL-IAIVAGLVQTVLYCDFFYLYITKVLKGKKL 208          
BLAST of CX047235 vs. ExPASy Swiss-Prot
Match: ERD21_BOVIN (ER lumen protein retaining receptor 1 OS=Bos taurus GN=KDELR1 PE=2 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 9.319e-24
Identity = 71/211 (33.65%), Postives = 112/211 (53.08%), Query Frame = -3
Query:  182 HAAGIMVLIYKLTTKNTCSGLSLKTQELTAMFLALRLVCSIIMEADIH-TVLDFATLASTAWVIYMIRFKLKSTYIKELDNFPIYYIAVPSAILAFIVHPSNRLINLSGILWAFCVYVESVSVLPQLRLMQNAKMIEPFTSHYVFALGVARFLSFAHWILQLIETRGRYLFLLGHGYLWFPVAFLAEMIQTFILADFCYYYIKSLKEGQLL 811
            H   I++L+ K+    +C+G+S K+Q L A+    R +        ++ T +    +A +   ++MI  K K+TY    D F + ++ +P+AILAF+V   N       ILW F +Y+ESV++LPQL ++      E  TSHY+FALGV R L   +WI        RY F    G+    +A +A ++QT +  DF Y YI  + +G+ L
Sbjct:   12 HLLAIILLLLKIWKSRSCAGISGKSQVLFAVVFTARYLDLFTNYISLYNTCMKVVYIACSFTTVWMIYSKFKATYDGNHDTFRVEFLVIPTAILAFLV---NHDFTPLEILWTFSIYLESVAILPQLFMVSKTGEAETITSHYLFALGVYRTLYLFNWI-------WRYHF---EGFFDL-IAIVAGLVQTVLYCDFFYLYITKVLKGKKL 208          
BLAST of CX047235 vs. ExPASy Swiss-Prot
Match: ERD2_SCHPO (ER lumen protein retaining receptor OS=Schizosaccharomyces pombe GN=erd2 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.217e-23
Identity = 69/218 (31.65%), Postives = 118/218 (54.13%), Query Frame = -3
Query:  188 YFFVASEAIHAAGIMVLIYKLTTKNTCSGLSLKTQELTAMFLALRLVCSIIMEADIHTVL-DFATLASTAWVIYMIRFKLKSTYIKELDNFPIYYIAVPSAILAFIVHPSNRLINLSGILWAFCVYVESVSVLPQLRLMQNAKMIEPFTSHYVFALGVARFLSFAHWILQLIETRGRYLFLLGHGYLWFPVAFLAEMIQTFILADFCYYYIKSLKEGQ 838
            +F    +  H A I +L++++    TCSGLSLK+  L  +    R +        ++  L     +AS +++ Y++   L+ TY K LD F   YI    A+LA +++P++  I  S ILW F +++ESV++LPQL ++Q +   E  T+HY+FA+ + R L   HWI ++   +     ++G       VA LA +IQT +  DF   Y +++ +G+
Sbjct:    3 FFSALGDMAHLAAIFLLLHRMKKSKTCSGLSLKSHLLFLLVYVTRYLNLFWRYKSLYYFLMRIVFIASESYICYLMLMTLRPTYDKRLDTFRTEYILGGCAVLA-LIYPTSYTI--SNILWTFSIWLESVAILPQLFMLQRSGETESLTAHYLFAMCLYRGLYIPHWIYRIAVHKK----VIG-------VAILAGIIQTVLYGDFAVVYRRTVLQGK 206          
BLAST of CX047235 vs. ExPASy Swiss-Prot
Match: ERD2_DROME (ER lumen protein retaining receptor OS=Drosophila melanogaster GN=KdelR PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.217e-23
Identity = 67/219 (30.59%), Postives = 115/219 (52.51%), Query Frame = -3
Query:  182 FFVASEAIHAAGIMVLIYKLTTKNTCSGLSLKTQELTAMFLALRLVCSIIMEADIH-TVLDFATLASTAWVIYMIRFKLKSTYIKELDNFPIYYIAVPSAILAFIVHPSNRLINLSGILWAFCVYVESVSVLPQLRLMQNAKMIEPFTSHYVFALGVARFLSFAHWILQLIETRGRYLFLLGHGYLWFPVAFLAEMIQTFILADFCYYYIKSLKEGQLL 835
            F  A +  H   I++L+ K+    +C+G+S K+Q L A+    R +        ++ +V+    LA++   +Y++  K K+TY    D+F I ++ VP A+L+ ++   N    +  +LW F +Y+ESV++LPQL L+      E  TSHY+FALG  R L   +W+         Y +++   Y    +A  A ++QT +  DF Y YI  + +G+ L
Sbjct:    4 FRFAGDLSHVFAIIILLLKIWKTRSCAGISGKSQILFAVVYLTRYLDLFTTYVSLYNSVMKVLFLATSGATVYLMYVKFKATYDHNHDSFRIEFLLVPCALLSLVI---NHEFTVMEVLWTFSIYLESVAILPQLFLVSRTGEAESITSHYLFALGSYRALYLLNWV---------YRYMVESHY--DLIAIFAGVVQTVLYCDFFYLYITKVLKGKKL 208          
The following BLAST results are available for this feature:
BLAST of CX047235 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
ERD22_CAEEL1.176e-2630.80Putative ER lumen protein retaining receptor C28H8... [more]
ERD2_PETHY6.453e-2530.77ER lumen protein retaining receptor OS=Petunia hyb... [more]
ERD2_ENTHI6.453e-2529.63ER lumen protein retaining receptor OS=Entamoeba h... [more]
ERD21_XENTR1.438e-2434.60ER lumen protein retaining receptor 1 OS=Xenopus t... [more]
ERD2_CAEBR4.183e-2430.00ER lumen protein retaining receptor OS=Caenorhabdi... [more]
ERD21_MOUSE7.135e-2434.12ER lumen protein retaining receptor 1 OS=Mus muscu... [more]
ERD21_RAT9.319e-2433.65ER lumen protein retaining receptor 1 OS=Rattus no... [more]
ERD21_BOVIN9.319e-2433.65ER lumen protein retaining receptor 1 OS=Bos tauru... [more]
ERD2_SCHPO1.217e-2331.65ER lumen protein retaining receptor OS=Schizosacch... [more]
ERD2_DROME1.217e-2330.59ER lumen protein retaining receptor OS=Drosophila ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_12H11_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-12H11-O21-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047235 ID=CX047235; Name=CX047235; organism=Citrus sinensis; type=EST; length=861bp
TTTTTTTTTTTTTTTTTCTAATGTAACCAAGACCGTTTATAAAGCCAGAA
GCACAAGCACCATTAAAATTTAAACTGCAAAATTAGGACGAAATGAAAAC
AAGTGATCTAATGGTACATCACTGCATTTTAGTTACCTTCTCAAGAAACG
GAAAATCAAAAATTTAAATGGGCATCCGCATGAGAAGTTGGCCTTCCTTT
AAACTTTTGATGTAATAGTAACAAAAGTCAGCCAAGATGAATGTCTGAAT
CATTTCCGCAAGAAAAGCCACTGGAAACCAGAGGTATCCATGACCAAGTA
AAAATAGATACCTCCCTCTTGTCTCAATAAGCTGCAAAATCCAATGAGCA
AAGGACAAGAATCGAGCAACGCCCAAGGCAAATACATAATGGGATGTAAA
TGGTTCAATCATTTTAGCATTCTGCATCAGCCGAAGTTGAGGCAGCACTG
AAACAGATTCTACGTACACACAAAATGCCCACAGGATCCCGCTCAAGTTT
ATGAGTCGATTAGAAGGGTGGACTATGAAAGCAAGGATAGCACTAGGCAC
CGCTATGTAGTATATAGGAAAGTTATCTAGCTCCTTGATGTAGGTTGACT
TCAACTTGAACCGTATCATATATATAACCCAAGCAGTGGACGCAAGGGTT
GCAAAATCTAGCACGGTGTGAATATCAGCCTCCATAATTATGCTGCAGAC
CAATCTCAGAGCTAGGAACATAGCTGTGAGTTCTTGAGTCTTCAGCGAAA
GACCAGAACAGGTATTCTTGGTGGTGAGCTTGTAAATCAAGACCATGATC
CCAGCAGCATGAATGGCTTCAGATGCAACGAAGAAATAATCATGATTTTT
AACAAAAAGCT
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