CX047233

Overview
NameCX047233
Unique NameCX047233
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length884
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3834 contig Csv1_Contig3834:1..884. BLAST: Citrus Unigene V1 Contigs to TAIR9
Homology
BLAST of CX047233 vs. ExPASy Swiss-Prot
Match: NU1M_CITLA (NADH-ubiquinone oxidoreductase chain 1 OS=Citrullus lanatus GN=ND1 PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 7.742e-35
Identity = 75/83 (90.36%), Postives = 75/83 (90.36%), Query Frame = 3
Query:  288 LICVGSCNLSEIVMAQKQIWFGIPLFPVLVMFFISCLAETNRAPFDLPEAEAESVAGYNVEYARDAILNSPLLAEANVPGSRG 536
            LICVG  N SEIVMAQKQIW GIPLFPVLVMFFIS LAETNRAPFDLPEAEAESVAGYNVEYA DAILNSPLLAEANVPG  G
Sbjct:  135 LICVGPRNSSEIVMAQKQIWSGIPLFPVLVMFFISRLAETNRAPFDLPEAEAESVAGYNVEYAWDAILNSPLLAEANVPGXPG 217          

HSP 2 Score: 23.0978 bits (48), Expect = 7.742e-35
Identity = 8/9 (88.89%), Postives = 8/9 (88.89%), Query Frame = 2
Query:  521 PGVPGTHSD 547
            PG PGTHSD
Sbjct:  213 PGXPGTHSD 221          
BLAST of CX047233 vs. ExPASy Swiss-Prot
Match: NU1M_WHEAT (NADH-ubiquinone oxidoreductase chain 1 OS=Triticum aestivum GN=ND1 PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.836e-30
Identity = 72/97 (74.23%), Postives = 74/97 (76.29%), Query Frame = 3
Query:  282 TVLICVGSCNLSEIVMAQKQIWFGIPLFPVLVMFFISCLAETNRAPFDLPEAEAESVAGYNVEYARDAILNSPLLAEANVPGSRGLILTETRGGSLP 572
            TVLICVGSCNLSEIVMAQKQIWFGIPLFPVLVMFFISCLAETNRAPFDLPEAEAE VAGYNVEY+        L   AN+    GL      GG LP
Sbjct:  157 TVLICVGSCNLSEIVMAQKQIWFGIPLFPVLVMFFISCLAETNRAPFDLPEAEAELVAGYNVEYSSMGFALFFLGEYANMILMSGLCTLLFLGGWLP 253          
BLAST of CX047233 vs. ExPASy Swiss-Prot
Match: NU1M_OENBE (NADH-ubiquinone oxidoreductase chain 1 OS=Oenothera bertiana GN=ND1 PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.836e-30
Identity = 72/97 (74.23%), Postives = 74/97 (76.29%), Query Frame = 3
Query:  282 TVLICVGSCNLSEIVMAQKQIWFGIPLFPVLVMFFISCLAETNRAPFDLPEAEAESVAGYNVEYARDAILNSPLLAEANVPGSRGLILTETRGGSLP 572
            TVLICVGSCNLSEIVMAQKQIWFGIPLFPVLVMFFISCLAETNRAPFDLPEAEAE VAGYNVEY+        L   AN+    GL      GG LP
Sbjct:  163 TVLICVGSCNLSEIVMAQKQIWFGIPLFPVLVMFFISCLAETNRAPFDLPEAEAELVAGYNVEYSSMGFALFFLGEYANMILMSGLCTLLFLGGWLP 259          
BLAST of CX047233 vs. ExPASy Swiss-Prot
Match: NU1M_ARATH (NADH-ubiquinone oxidoreductase chain 1 OS=Arabidopsis thaliana GN=ND1 PE=1 SV=4)

HSP 1 Score: 133.265 bits (334), Expect = 1.836e-30
Identity = 72/97 (74.23%), Postives = 74/97 (76.29%), Query Frame = 3
Query:  282 TVLICVGSCNLSEIVMAQKQIWFGIPLFPVLVMFFISCLAETNRAPFDLPEAEAESVAGYNVEYARDAILNSPLLAEANVPGSRGLILTETRGGSLP 572
            TVLICVGSCNLSEIVMAQKQIWFGIPLFPVLVMFFISCLAETNRAPFDLPEAEAE VAGYNVEY+        L   AN+    GL      GG LP
Sbjct:  157 TVLICVGSCNLSEIVMAQKQIWFGIPLFPVLVMFFISCLAETNRAPFDLPEAEAELVAGYNVEYSSMGFALFFLGEYANMILMSGLCTLFFLGGWLP 253          
BLAST of CX047233 vs. ExPASy Swiss-Prot
Match: NU1M_PETHY (NADH-ubiquinone oxidoreductase chain 1 OS=Petunia hybrida GN=ND1 PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 5.528e-27
Identity = 69/97 (71.13%), Postives = 73/97 (75.26%), Query Frame = 3
Query:  282 TVLICVGSCNLSEIVMAQKQIWFGIPLFPVLVMFFISCLAETNRAPFDLPEAEAESVAGYNVEYARDAILNSPLLAEANVPGSRGLILTETRGGSLP 572
            TVLICVGS N SEIVMAQKQIW GIPLFPVLVMFFIS LAETNRAPFDLPEAEAESVAGYNVEY+      S L   AN+    GL  + + GG  P
Sbjct:  157 TVLICVGSRNSSEIVMAQKQIWSGIPLFPVLVMFFISRLAETNRAPFDLPEAEAESVAGYNVEYSSMGSALSFLGEYANMILMSGLCTSLSPGGWPP 253          
BLAST of CX047233 vs. ExPASy Swiss-Prot
Match: NU1M_MARPO (NADH-ubiquinone oxidoreductase chain 1 OS=Marchantia polymorpha GN=ND1 PE=3 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 3.353e-24
Identity = 51/65 (78.46%), Postives = 58/65 (89.23%), Query Frame = 3
Query:  282 TVLICVGSCNLSEIVMAQKQIWFGIPLFPVLVMFFISCLAETNRAPFDLPEAEAESVAGYNVEYA 476
            +V++C GSCN SEIV+AQ +IWF  PLFPV +MFFISCLAETNRAPFDLPEAEAE VAGYNVEY+
Sbjct:  160 SVILCAGSCNFSEIVLAQTRIWFVFPLFPVFLMFFISCLAETNRAPFDLPEAEAELVAGYNVEYS 224          
BLAST of CX047233 vs. ExPASy Swiss-Prot
Match: NU1M_CHOCR (NADH-ubiquinone oxidoreductase chain 1 OS=Chondrus crispus GN=ND1 PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 9.132e-22
Identity = 48/64 (75.00%), Postives = 56/64 (87.50%), Query Frame = 3
Query:  285 VLICVGSCNLSEIVMAQKQIWFGIPLFPVLVMFFISCLAETNRAPFDLPEAEAESVAGYNVEYA 476
            VL+C GS N +EIV+AQ+ IWF IPLFP+ +MF+IS LAETNRAPFDLPEAEAE VAGYNVEY+
Sbjct:  159 VLLCSGSLNFTEIVLAQQSIWFVIPLFPIFIMFYISILAETNRAPFDLPEAEAELVAGYNVEYS 222          
BLAST of CX047233 vs. ExPASy Swiss-Prot
Match: NUOH_PELUB (NADH-quinone oxidoreductase subunit H OS=Pelagibacter ubique GN=nuoH PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.319e-20
Identity = 46/64 (71.88%), Postives = 55/64 (85.94%), Query Frame = 3
Query:  285 VLICVGSCNLSEIVMAQKQIWFGIPLFPVLVMFFISCLAETNRAPFDLPEAEAESVAGYNVEYA 476
            VL+CVGS NL++I+MAQ+ +WF IPLFP+ V+FFIS LAETNR PFDLPEAEAE VAGY  EY+
Sbjct:  163 VLLCVGSLNLNDIIMAQENLWFIIPLFPMFVIFFISALAETNRPPFDLPEAEAELVAGYQTEYS 226          
BLAST of CX047233 vs. ExPASy Swiss-Prot
Match: NU1M_CYACA (NADH-ubiquinone oxidoreductase chain 1 OS=Cyanidium caldarium GN=ND1 PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.249e-20
Identity = 46/64 (71.88%), Postives = 55/64 (85.94%), Query Frame = 3
Query:  285 VLICVGSCNLSEIVMAQKQIWFGIPLFPVLVMFFISCLAETNRAPFDLPEAEAESVAGYNVEYA 476
            VL+C G+ NL EIV+AQ+ IW+  PLFP+ +MFFIS LAETNR+PFDLPEAEAE VAGYNVEY+
Sbjct:  176 VLLCSGTLNLKEIVLAQQNIWYIFPLFPLFLMFFISSLAETNRSPFDLPEAEAELVAGYNVEYS 239          
BLAST of CX047233 vs. ExPASy Swiss-Prot
Match: NUOH_RHOCS (NADH-quinone oxidoreductase subunit H OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=nuoH PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 6.545e-20
Identity = 44/65 (67.69%), Postives = 54/65 (83.08%), Query Frame = 3
Query:  282 TVLICVGSCNLSEIVMAQKQIWFGIPLFPVLVMFFISCLAETNRAPFDLPEAEAESVAGYNVEYA 476
            TVL+CVGS NLS++V AQK +WF IPL P+ V+FFIS LAETNRAPFDLPE E+E V G++ EY+
Sbjct:  167 TVLLCVGSLNLSDVVEAQKTVWFAIPLLPMFVIFFISALAETNRAPFDLPEGESELVGGFHTEYS 231          
The following BLAST results are available for this feature:
BLAST of CX047233 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 263
Match NameE-valueIdentityDescription
NU1M_CITLA7.742e-3590.36NADH-ubiquinone oxidoreductase chain 1 OS=Citrullu... [more]
NU1M_WHEAT1.836e-3074.23NADH-ubiquinone oxidoreductase chain 1 OS=Triticum... [more]
NU1M_OENBE1.836e-3074.23NADH-ubiquinone oxidoreductase chain 1 OS=Oenother... [more]
NU1M_ARATH1.836e-3074.23NADH-ubiquinone oxidoreductase chain 1 OS=Arabidop... [more]
NU1M_PETHY5.528e-2771.13NADH-ubiquinone oxidoreductase chain 1 OS=Petunia ... [more]
NU1M_MARPO3.353e-2478.46NADH-ubiquinone oxidoreductase chain 1 OS=Marchant... [more]
NU1M_CHOCR9.132e-2275.00NADH-ubiquinone oxidoreductase chain 1 OS=Chondrus... [more]
NUOH_PELUB1.319e-2071.88NADH-quinone oxidoreductase subunit H OS=Pelagibac... [more]
NU1M_CYACA2.249e-2071.88NADH-ubiquinone oxidoreductase chain 1 OS=Cyanidiu... [more]
NUOH_RHOCS6.545e-2067.69NADH-quinone oxidoreductase subunit H OS=Rhodospir... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_12H10_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-12H10-O19-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047233 ID=CX047233; Name=CX047233; organism=Citrus sinensis; type=EST; length=884bp
AGCAGGATGCCGGCCGAGATGGAGCTGGGAGCCAACCTATACTTTCCTGG
GGCTTGCCTTGCCCCAACATCTAAATAAAAGGCGGGCGCCGAAAAGGAAC
CCTCTTCAAGAAAGCTTTGCTTGGTAGGCGCTGCCTACTCACTCGGACAA
TGCTCTGAACACGAAAGTATGCAGTTCCGCCCCCTTCTCTCATGCTGAGT
CACAGGCAGCGCCTCGGAAAGCACGGACGAGCCACATGCAGGGAAACTTG
CACGTGTGGTTCTGGCCGGGGACCCCGGTATACTGTACTAATATGTGTAG
GTTCTTGTAATTTGAGTGAGATTGTCATGGCGCAAAAGCAGATATGGTTT
GGTATTCCCTTGTTCCCTGTATTGGTTATGTTCTTTATTTCTTGTCTAGC
AGAAACTAATCGAGCTCCGTTTGATCTCCCAGAAGCGGAAGCTGAATCAG
TTGCAGGCTATAATGTAGAATATGCGCGGGATGCGATCCTTAATAGTCCA
CTGTTGGCGGAAGCCAATGTCCCGGGGTCCCGGGGACTCATTCTGACTGA
AACAAGGGGTGGGTCTTTACCAACTTAAAAATATTCGATTTTAGGCTGAA
AAACGGATGCGCGCTACTAGCGCGGCTCGCTTCGCTTTTTTTTGTTGCGG
AGCTCGCTGCTTTTCATTTTGTTAGGAGTAGGTGCTTGCCCTTAGTTGGT
TGGGCACTCTTCATTCGAAAGTCGGGTCGGGGCTTTCTGTCTTGTTATCA
AAAAGGGAGTTGGGTAAAGCAAACTCCCTCCTTGGACGAGCACGGGGCTT
AGTCAAGTAGAACCGGGTTGCGTTGCTTGATGCTCCGATCGAAAACAAAT
CCGTGGGGCCATGCCGGTACGACTGAATATGCGT
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