CX047225

Overview
NameCX047225
Unique NameCX047225
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length761
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6910 contig Csv1_Contig6910:200..960. BLAST: Citrus Unigene V1 Contigs to SwissProt
Homology
[Close]
BLAST of CX047225 vs. ExPASy Swiss-Prot
Match: YCF68_ORYSJ (Uncharacterized protein ycf68 OS=Oryza sativa subsp. japonica GN=ycf68-1 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.517e-11
Identity = 39/59 (66.10%), Postives = 41/59 (69.49%), Query Frame = 1 
Query:   31 KNGAPNNVSSQTKNYEIAPFISFWGDGGIVXXXXXXXXXXXXGGLEKAAINRIFLILPS 207
            +NGAPNN SSQTKNYEI   +SFWGDGGIV            GGLEKAAINR  LILPS
Sbjct:   79 ENGAPNNASSQTKNYEIT--LSFWGDGGIV--PFEPFFHAFPGGLEKAAINRTSLILPS 133

HSP 2 Score: 20.7866 bits (42), Expect = 1.517e-11
Identity = 8/9 (88.89%), Postives = 8/9 (88.89%), Query Frame = 3 
Query:    3 QV*VRPQWE 29
            QV VRPQWE
Sbjct:   71 QVEVRPQWE 79
[Close]
BLAST of CX047225 vs. ExPASy Swiss-Prot
Match: YCF68_ORYSI (Uncharacterized protein ycf68 OS=Oryza sativa subsp. indica GN=ycf68-1 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.517e-11
Identity = 39/59 (66.10%), Postives = 41/59 (69.49%), Query Frame = 1 
Query:   31 KNGAPNNVSSQTKNYEIAPFISFWGDGGIVXXXXXXXXXXXXGGLEKAAINRIFLILPS 207
            +NGAPNN SSQTKNYEI   +SFWGDGGIV            GGLEKAAINR  LILPS
Sbjct:   79 ENGAPNNASSQTKNYEIT--LSFWGDGGIV--PFEPFFHAFPGGLEKAAINRTSLILPS 133

HSP 2 Score: 20.7866 bits (42), Expect = 1.517e-11
Identity = 8/9 (88.89%), Postives = 8/9 (88.89%), Query Frame = 3 
Query:    3 QV*VRPQWE 29
            QV VRPQWE
Sbjct:   71 QVEVRPQWE 79
[Close]
BLAST of CX047225 vs. ExPASy Swiss-Prot
Match: YCF68_ORYSA (Uncharacterized protein ycf68 OS=Oryza sativa GN=ycf68-1 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.517e-11
Identity = 39/59 (66.10%), Postives = 41/59 (69.49%), Query Frame = 1 
Query:   31 KNGAPNNVSSQTKNYEIAPFISFWGDGGIVXXXXXXXXXXXXGGLEKAAINRIFLILPS 207
            +NGAPNN SSQTKNYEI   +SFWGDGGIV            GGLEKAAINR  LILPS
Sbjct:   79 ENGAPNNASSQTKNYEIT--LSFWGDGGIV--PFEPFFHAFPGGLEKAAINRTSLILPS 133

HSP 2 Score: 20.7866 bits (42), Expect = 1.517e-11
Identity = 8/9 (88.89%), Postives = 8/9 (88.89%), Query Frame = 3 
Query:    3 QV*VRPQWE 29
            QV VRPQWE
Sbjct:   71 QVEVRPQWE 79
[Close]
BLAST of CX047225 vs. ExPASy Swiss-Prot
Match: YCF68_ORYNI (Uncharacterized protein ycf68 OS=Oryza nivara GN=ycf68-1 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.517e-11
Identity = 39/59 (66.10%), Postives = 41/59 (69.49%), Query Frame = 1 
Query:   31 KNGAPNNVSSQTKNYEIAPFISFWGDGGIVXXXXXXXXXXXXGGLEKAAINRIFLILPS 207
            +NGAPNN SSQTKNYEI   +SFWGDGGIV            GGLEKAAINR  LILPS
Sbjct:   79 ENGAPNNASSQTKNYEIT--LSFWGDGGIV--PFEPFFHAFPGGLEKAAINRTSLILPS 133

HSP 2 Score: 20.7866 bits (42), Expect = 1.517e-11
Identity = 8/9 (88.89%), Postives = 8/9 (88.89%), Query Frame = 3 
Query:    3 QV*VRPQWE 29
            QV VRPQWE
Sbjct:   71 QVEVRPQWE 79
The following BLAST results are available for this feature:
BLAST of CX047225 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
YCF68_ORYSJ1.517e-1166.10Uncharacterized protein ycf68 OS=Oryza sativa subs... [more]
YCF68_ORYSI1.517e-1166.10Uncharacterized protein ycf68 OS=Oryza sativa subs... [more]
YCF68_ORYSA1.517e-1166.10Uncharacterized protein ycf68 OS=Oryza sativa GN=y... [more]
YCF68_ORYNI1.517e-1166.10Uncharacterized protein ycf68 OS=Oryza nivara GN=y... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS09_12H05_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-12H05-O9-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047225 ID=CX047225; Name=CX047225; organism=Citrus sinensis; type=EST; length=761bp
CACAGGTTTAGGTTCGGCCTCAATGGGAAAAAAAATGGAGCACCTAACAA
CGTATCTTCACAGACCAAGAACTACGAGATCGCCCCTTTCATTTCATTCT
GGGGTGACGGAGGGATCGTACCATTCGAGCCTTTTTTTTTTTTTCATGCT
TTTCCCGGAGGTCTGGAGAAAGCTGCAATCAATAGGATTTTCCTAATCCT
CCCTTCCCGAAAGGAAGAACGTGAAATTCTTTTTCCTTTTCCTTTCCGCA
GGGACCAGGAGATTGGATCTAGCCGTAAGAAGAATGCTTGGCTGATAAAT
AACTCACTTCTTGGTCTTCGACCCCCTCAGTCACTACGAACGCCCCCGAG
CGGTGCAATGGGATGTGTCTATTTATCTATCTCTTGACTCGAAATGGGAG
CAGGTTTGAAAAAGGATCTTAGAGTGTCTAGGGTTGGGCCGGGAGGGCCT
CTTAACGCCTTCTTTTTTCTTCTCATCGGAGTTATTTCACAAATACGTGC
CATGATAAGGAAGAGGGGGGGAACAAGCACACTTGGAGAGCGCAGTACAA
CGGAGAGTTGTATGCTGCGTTCGGGAAGGATGAATCGCTCCCGAAAAGGA
ATCCGTTGATTCTCTCCCAATTGGTTGGACCGTAGGTGCGATGATTTACT
TCACGGGCGAGGTCTCTGGTTCAAATCCAGGATGGCCCAGCTGCGCCAAG
GAAAAGAAAAAGAATAGAAGAAGCGTCGGACTCCTTCATGCATGCTCCAC
TTGGCTCGGGG
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