CX047207

Overview
NameCX047207
Unique NameCX047207
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length721
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX047207_ssr585 microsatellite CX047207_ssr585:585..602. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX047207 vs. ExPASy Swiss-Prot
Match: CP51_SORBI (Obtusifoliol 14-alpha demethylase OS=Sorghum bicolor GN=CYP51 PE=1 SV=1)

HSP 1 Score: 280.411 bits (716), Expect = 6.585e-75
Identity = 132/155 (85.16%), Postives = 137/155 (88.39%), Query Frame = 3
Query:    3 EMDVLYRCIKEALRLHPPLIMLLRSSHSDFTVQTREGKEYDIPKGHIVGTSPAFANRLPHIYKNPDSYDPDRFAPGREEDKAAGAFSYISFGGGRHGCLGEPFAYLQIKAIWSHLLRNFEFELISPFPEIDWNAXXXXXXXXXXXRYKRRELSVD 467
            EMDVLYRCIKEALRLHPPLIMLLR SHSDFTV T+EGKEYDIPKGHIV TSP+FANRLPHIYKNPDSYDPDRF PGREEDKAAGAFSYISFGGGRHGCLGEPFAYLQIKAIW+HLLRNFEFEL+SPFPE DWNA            YKRR+L VD
Sbjct:  337 EMDVLYRCIKEALRLHPPLIMLLRQSHSDFTVTTKEGKEYDIPKGHIVATSPSFANRLPHIYKNPDSYDPDRFGPGREEDKAAGAFSYISFGGGRHGCLGEPFAYLQIKAIWTHLLRNFEFELVSPFPENDWNAMVVGIKGEVMVNYKRRKLVVD 491          
BLAST of CX047207 vs. ExPASy Swiss-Prot
Match: CP51_WHEAT (Obtusifoliol 14-alpha demethylase (Fragment) OS=Triticum aestivum GN=CYP51 PE=2 SV=1)

HSP 1 Score: 275.018 bits (702), Expect = 2.767e-73
Identity = 130/155 (83.87%), Postives = 136/155 (87.74%), Query Frame = 3
Query:    3 EMDVLYRCIKEALRLHPPLIMLLRSSHSDFTVQTREGKEYDIPKGHIVGTSPAFANRLPHIYKNPDSYDPDRFAPGREEDKAAGAFSYISFGGGRHGCLGEPFAYLQIKAIWSHLLRNFEFELISPFPEIDWNAXXXXXXXXXXXRYKRRELSVD 467
            EMDVLYRCIKEALRLHPPLIMLLR SHSDF+V TREGKE+DIPKGHIV TSPAFANRLPHI+KNPDSYDPDRFA GREEDK AGAFSYISFGGGRHGCLGEPFAYLQIKAIW+HLLRNFEFEL+SPFPE DWNA            YKRR+L VD
Sbjct:  298 EMDVLYRCIKEALRLHPPLIMLLRQSHSDFSVTTREGKEFDIPKGHIVATSPAFANRLPHIFKNPDSYDPDRFAAGREEDKVAGAFSYISFGGGRHGCLGEPFAYLQIKAIWTHLLRNFEFELVSPFPENDWNAMVVGIKGEVMVNYKRRKLIVD 452          
BLAST of CX047207 vs. ExPASy Swiss-Prot
Match: CP51_MYCVP (Lanosterol 14-alpha demethylase OS=Mycobacterium vanbaalenii (strain DSM 7251 / PYR-1) GN=cyp51 PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.148e-25
Identity = 65/149 (43.62%), Postives = 88/149 (59.06%), Query Frame = 3
Query:   15 LYRCIKEALRLHPPLIMLLRSSHSDFTVQTREGKEYDIPKGHIVGTSPAFANRLPHIYKNPDSYDPDRFAPGREEDKAAGAFSYISFGGGRHGCLGEPFAYLQIKAIWSHLLRNFEFELISPFPEI---DWNAXXXXXXXXXXXRYKRR 452
            L   +KE LRLHPPLI+L+R +  +F V       Y I KG +V  SPA +NR+P  + NPD +DPDR+   R+ED     +++I FG G+H C+G  FA +QIKAI+S LLR +EFE+  P PE    D +            RY+RR
Sbjct:  308 LDNALKETLRLHPPLIILMRVAQDEFEVAG-----YPIHKGQMVAASPAISNRIPEDFPNPDDFDPDRYEKPRQED-LINRWTWIPFGAGKHRCVGAAFAQMQIKAIFSVLLREYEFEMAQP-PESYQNDHSKMVVQLARPAKVRYRRR 449          
BLAST of CX047207 vs. ExPASy Swiss-Prot
Match: CP51_DICDI (Probable lanosterol 14-alpha demethylase OS=Dictyostelium discoideum GN=cyp51 PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.051e-24
Identity = 63/150 (42.00%), Postives = 83/150 (55.33%), Query Frame = 3
Query:    6 MDVLYRCIKEALRLHPPLIMLLRSSHSDFTVQTREGKEYDIPKGHIVGTSPAFANRLPHIYKNPDSYDPDRFAPGREEDKAAGAFSYISFGGGRHGCLGEPFAYLQIKAIWSHLLRNFEFELISPFPEIDWNAXXXXXXXXXXXRYKRRE 455
            M+ L   I+E LRLHPPLI L+R       +   E K   IP GHI+  SP    RLP +YKNPDS++P RF     EDK    FS+I+FGGG+HGC GE F  LQIK IW+ L   +  E + P P  D+ +           +Y +++
Sbjct:  327 MNRLETVIREVLRLHPPLIFLMRK-----VMTPMEYKGKTIPAGHILAVSPQVGMRLPTVYKNPDSFEPKRFDV---EDKTP--FSFIAFGGGKHGCPGENFGILQIKTIWTVLSTKYNLE-VGPVPPTDFTSLVAGPKGPCMVKYSKKQ 465          
BLAST of CX047207 vs. ExPASy Swiss-Prot
Match: CP51A_PONAB (Lanosterol 14-alpha demethylase OS=Pongo abelii GN=CYP51A1 PE=2 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 1.303e-22
Identity = 63/152 (41.45%), Postives = 91/152 (59.87%), Query Frame = 3
Query:    3 EMDVLYRCIKEALRLHPPLIMLLRSSHSDFTVQTREGKEYDIPKGHIVGTSPAFANRLPHIYKNPDSYDPDRFAPGREEDKAAGA-FSYISFGGGRHGCLGEPFAYLQIKAIWSHLLRNFEFELISP-FPEIDWNAXXXXXXXXXXXRYKRR 452
            ++++L RCIKE LRL PP+++++R +    T QT  G  Y IP GH V  SP    RL   +     ++PDR+    +++ A+G  F+Y+ FG GRH C+GE FAY+QIK IWS +LR +EF+LI   FP +++             RYKRR
Sbjct:  359 DLNLLDRCIKETLRLRPPIMIMMRMAR---TPQTVAG--YTIPPGHQVCVSPTVNQRLKDSWVERLDFNPDRYL---QDNPASGEKFAYVPFGAGRHRCIGENFAYVQIKTIWSTMLRLYEFDLIDGYFPTVNYTT-MIHTPENPVIRYKRR 501          
BLAST of CX047207 vs. ExPASy Swiss-Prot
Match: CP51A_MACFA (Lanosterol 14-alpha demethylase OS=Macaca fascicularis GN=CYP51A1 PE=2 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 1.303e-22
Identity = 63/152 (41.45%), Postives = 91/152 (59.87%), Query Frame = 3
Query:    3 EMDVLYRCIKEALRLHPPLIMLLRSSHSDFTVQTREGKEYDIPKGHIVGTSPAFANRLPHIYKNPDSYDPDRFAPGREEDKAAGA-FSYISFGGGRHGCLGEPFAYLQIKAIWSHLLRNFEFELISP-FPEIDWNAXXXXXXXXXXXRYKRR 452
            ++++L RCIKE LRL PP+++++R +    T QT  G  Y IP GH V  SP    RL   +     ++PDR+    +++ A+G  F+Y+ FG GRH C+GE FAY+QIK IWS +LR +EF+LI   FP +++             RYKRR
Sbjct:  359 DLNLLDRCIKETLRLRPPIMIMMRMAR---TPQTVAG--YTIPPGHQVCVSPTVNQRLKDSWVERLDFNPDRYL---QDNPASGEKFAYVPFGAGRHRCIGENFAYVQIKTIWSTMLRLYEFDLIDGYFPTVNYTT-MIHTPENPVIRYKRR 501          
BLAST of CX047207 vs. ExPASy Swiss-Prot
Match: CP51A_HUMAN (Lanosterol 14-alpha demethylase OS=Homo sapiens GN=CYP51A1 PE=1 SV=3)

HSP 1 Score: 106.686 bits (265), Expect = 1.303e-22
Identity = 63/152 (41.45%), Postives = 91/152 (59.87%), Query Frame = 3
Query:    3 EMDVLYRCIKEALRLHPPLIMLLRSSHSDFTVQTREGKEYDIPKGHIVGTSPAFANRLPHIYKNPDSYDPDRFAPGREEDKAAGA-FSYISFGGGRHGCLGEPFAYLQIKAIWSHLLRNFEFELISP-FPEIDWNAXXXXXXXXXXXRYKRR 452
            ++++L RCIKE LRL PP+++++R +    T QT  G  Y IP GH V  SP    RL   +     ++PDR+    +++ A+G  F+Y+ FG GRH C+GE FAY+QIK IWS +LR +EF+LI   FP +++             RYKRR
Sbjct:  359 DLNLLDRCIKETLRLRPPIMIMMRMAR---TPQTVAG--YTIPPGHQVCVSPTVNQRLKDSWVERLDFNPDRYL---QDNPASGEKFAYVPFGAGRHRCIGENFAYVQIKTIWSTMLRLYEFDLIDGYFPTVNYTT-MIHTPENPVIRYKRR 501          
BLAST of CX047207 vs. ExPASy Swiss-Prot
Match: CP51A_BOVIN (Lanosterol 14-alpha demethylase OS=Bos taurus GN=CYP51A1 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.303e-22
Identity = 62/152 (40.79%), Postives = 88/152 (57.89%), Query Frame = 3
Query:    3 EMDVLYRCIKEALRLHPPLIMLLRSSHSDFTVQTREGKEYDIPKGHIVGTSPAFANRLPHIYKNPDSYDPDRFAPGREEDKAAGA-FSYISFGGGRHGCLGEPFAYLQIKAIWSHLLRNFEFELISP-FPEIDWNAXXXXXXXXXXXRYKRR 452
            ++++L RCIKE LRL PP++ ++R + +  TV       Y IP GH V  SP    RL   +     ++PDR+    E+  A+G  F+Y+ FG GRH C+GE FAY+QIK IWS +LR +EF+LI   FP +++             RYKRR
Sbjct:  358 DLNLLDRCIKETLRLRPPIMTMMRLAKTPLTVAG-----YTIPPGHQVCVSPTVNQRLKDSWVERLDFNPDRYL---EDSPASGEKFAYVPFGAGRHRCIGENFAYVQIKTIWSTMLRLYEFDLIDGYFPTVNYTT-MIHTPEKPIIRYKRR 500          
BLAST of CX047207 vs. ExPASy Swiss-Prot
Match: CP51A_RAT (Lanosterol 14-alpha demethylase OS=Rattus norvegicus GN=Cyp51a1 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.702e-22
Identity = 63/152 (41.45%), Postives = 91/152 (59.87%), Query Frame = 3
Query:    3 EMDVLYRCIKEALRLHPPLIMLLRSSHSDFTVQTREGKEYDIPKGHIVGTSPAFANRLPHIYKNPDSYDPDRFAPGREEDKAAGA-FSYISFGGGRHGCLGEPFAYLQIKAIWSHLLRNFEFELISP-FPEIDWNAXXXXXXXXXXXRYKRR 452
            ++++L RCIKE LRL PP++ ++R +    T QT  G  Y IP GH V  SP    RL   +     ++PDR+    +++ A+G  F+Y+ FG GRH C+GE FAY+QIK IWS +LR +EF+LI+  FP +++             RYKRR
Sbjct:  359 DLNLLDRCIKETLRLRPPIMTMMRMAK---TPQTVAG--YTIPPGHQVCVSPTVNQRLKDSWVERLDFNPDRYL---QDNPASGEKFAYVPFGAGRHRCIGENFAYVQIKTIWSTMLRLYEFDLINGYFPSVNYTT-MIHTPENPVIRYKRR 501          
BLAST of CX047207 vs. ExPASy Swiss-Prot
Match: CP51A_MOUSE (Lanosterol 14-alpha demethylase OS=Mus musculus GN=Cyp51a1 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.223e-22
Identity = 63/152 (41.45%), Postives = 91/152 (59.87%), Query Frame = 3
Query:    3 EMDVLYRCIKEALRLHPPLIMLLRSSHSDFTVQTREGKEYDIPKGHIVGTSPAFANRLPHIYKNPDSYDPDRFAPGREEDKAAGA-FSYISFGGGRHGCLGEPFAYLQIKAIWSHLLRNFEFELISP-FPEIDWNAXXXXXXXXXXXRYKRR 452
            ++++L RCIKE LRL PP++ ++R +    T QT  G  Y IP GH V  SP    RL   +     ++PDR+    +++ A+G  F+Y+ FG GRH C+GE FAY+QIK IWS +LR +EF+LI+  FP +++             RYKRR
Sbjct:  359 DLNLLDRCIKETLRLRPPIMTMMRMAK---TPQTVAG--YTIPPGHQVCVSPTVNQRLKDSWAERLDFNPDRYL---QDNPASGEKFAYVPFGAGRHRCVGENFAYVQIKTIWSTMLRLYEFDLINGYFPTVNYTT-MIHTPENPVIRYKRR 501          
The following BLAST results are available for this feature:
BLAST of CX047207 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
CP51_SORBI6.585e-7585.16Obtusifoliol 14-alpha demethylase OS=Sorghum bicol... [more]
CP51_WHEAT2.767e-7383.87Obtusifoliol 14-alpha demethylase (Fragment) OS=Tr... [more]
CP51_MYCVP2.148e-2543.62Lanosterol 14-alpha demethylase OS=Mycobacterium v... [more]
CP51_DICDI4.051e-2442.00Probable lanosterol 14-alpha demethylase OS=Dictyo... [more]
CP51A_PONAB1.303e-2241.45Lanosterol 14-alpha demethylase OS=Pongo abelii GN... [more]
CP51A_MACFA1.303e-2241.45Lanosterol 14-alpha demethylase OS=Macaca fascicul... [more]
CP51A_HUMAN1.303e-2241.45Lanosterol 14-alpha demethylase OS=Homo sapiens GN... [more]
CP51A_BOVIN1.303e-2240.79Lanosterol 14-alpha demethylase OS=Bos taurus GN=C... [more]
CP51A_RAT1.702e-2241.45Lanosterol 14-alpha demethylase OS=Rattus norvegic... [more]
CP51A_MOUSE2.223e-2241.45Lanosterol 14-alpha demethylase OS=Mus musculus GN... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS09_12G07_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-12G07-M13-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047207 ID=CX047207; Name=CX047207; organism=Citrus sinensis; type=EST; length=721bp
CTGAGATGGATGTCCTCTATCGATGCATTAAGGAAGCCCTGAGACTACAC
CCTCCACTGATCATGCTTTTGCGAAGCTCACACAGTGATTTTACTGTGCA
GACCCGTGAAGGTAAAGAATACGACATACCAAAGGGACACATAGTTGGAA
CATCACCAGCATTTGCAAACCGGCTTCCTCATATTTACAAGAATCCAGAC
AGTTACGATCCTGACAGGTTTGCTCCTGGAAGAGAAGAAGATAAGGCTGC
TGGGGCATTCTCATATATTTCGTTTGGTGGGGGTAGGCATGGATGTCTTG
GTGAGCCTTTTGCATATCTGCAGATAAAGGCAATATGGAGCCATTTGTTA
AGAAATTTTGAATTTGAGCTGATATCTCCTTTCCCTGAGATTGATTGGAA
TGCAATGGTTGTTGGTGTCAAAGGAAAGGTGATGGTGCGTTACAAGCGCA
GGGAACTTTCTGTTGACTAGATGGAACTACTTAGAGCAAGTATGTTGTCT
GGGATGTTATAGACTAAGTTTTGTTTGAACTGCTGCTGCCATAGTCTTAT
TATGTGTTATCGGAGAGGTTCTTGGCTTTTTTCTTCTCTCTCTCTCTCTC
TCTTTTTTTTTTTAAATTTATTTAACGGCGTTGTAACCTTTGCTTTCCTG
ATTCCCGTACTTGTGACAAATTATGTAGATTAGCTTTTGCGTCAAGCGTA
AATTTCTTTGGCATCATGCCT
back to top