CX047206

Overview
NameCX047206
Unique NameCX047206
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length717
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX047206_ssr116 microsatellite CX047206_ssr116:116..133. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX047206 vs. ExPASy Swiss-Prot
Match: CP51_SORBI (Obtusifoliol 14-alpha demethylase OS=Sorghum bicolor GN=CYP51 PE=1 SV=1)

HSP 1 Score: 280.411 bits (716), Expect = 6.532e-75
Identity = 133/155 (85.81%), Postives = 138/155 (89.03%), Query Frame = -2
Query:  252 EMDVLYRCIKEALRLHPPLIMLLRSSHSDFTVQTREGKEYDIPKGHIVGTSPAFANRLPHIYKNPDSYDPDRFAPGREEDKAAGAFSYISFGGGRHGCLGEPFAYLQIKAIWSHLLRNFEFELISPFPEIDWNAXXXXXXXXXXVRYKRRELSVD 716
            EMDVLYRCIKEALRLHPPLIMLLR SHSDFTV T+EGKEYDIPKGHIV TSP+FANRLPHIYKNPDSYDPDRF PGREEDKAAGAFSYISFGGGRHGCLGEPFAYLQIKAIW+HLLRNFEFEL+SPFPE DWNA          V YKRR+L VD
Sbjct:  337 EMDVLYRCIKEALRLHPPLIMLLRQSHSDFTVTTKEGKEYDIPKGHIVATSPSFANRLPHIYKNPDSYDPDRFGPGREEDKAAGAFSYISFGGGRHGCLGEPFAYLQIKAIWTHLLRNFEFELVSPFPENDWNAMVVGIKGEVMVNYKRRKLVVD 491          
BLAST of CX047206 vs. ExPASy Swiss-Prot
Match: CP51_WHEAT (Obtusifoliol 14-alpha demethylase (Fragment) OS=Triticum aestivum GN=CYP51 PE=2 SV=1)

HSP 1 Score: 275.018 bits (702), Expect = 2.745e-73
Identity = 131/155 (84.52%), Postives = 137/155 (88.39%), Query Frame = -2
Query:  252 EMDVLYRCIKEALRLHPPLIMLLRSSHSDFTVQTREGKEYDIPKGHIVGTSPAFANRLPHIYKNPDSYDPDRFAPGREEDKAAGAFSYISFGGGRHGCLGEPFAYLQIKAIWSHLLRNFEFELISPFPEIDWNAXXXXXXXXXXVRYKRRELSVD 716
            EMDVLYRCIKEALRLHPPLIMLLR SHSDF+V TREGKE+DIPKGHIV TSPAFANRLPHI+KNPDSYDPDRFA GREEDK AGAFSYISFGGGRHGCLGEPFAYLQIKAIW+HLLRNFEFEL+SPFPE DWNA          V YKRR+L VD
Sbjct:  298 EMDVLYRCIKEALRLHPPLIMLLRQSHSDFSVTTREGKEFDIPKGHIVATSPAFANRLPHIFKNPDSYDPDRFAAGREEDKVAGAFSYISFGGGRHGCLGEPFAYLQIKAIWTHLLRNFEFELVSPFPENDWNAMVVGIKGEVMVNYKRRKLIVD 452          
BLAST of CX047206 vs. ExPASy Swiss-Prot
Match: CP51_MYCVP (Lanosterol 14-alpha demethylase OS=Mycobacterium vanbaalenii (strain DSM 7251 / PYR-1) GN=cyp51 PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.131e-25
Identity = 66/149 (44.30%), Postives = 89/149 (59.73%), Query Frame = -2
Query:  267 LYRCIKEALRLHPPLIMLLRSSHSDFTVQTREGKEYDIPKGHIVGTSPAFANRLPHIYKNPDSYDPDRFAPGREEDKAAGAFSYISFGGGRHGCLGEPFAYLQIKAIWSHLLRNFEFELISPFPEI---DWNAXXXXXXXXXXVRYKRR 704
            L   +KE LRLHPPLI+L+R +  +F V       Y I KG +V  SPA +NR+P  + NPD +DPDR+   R+ED     +++I FG G+H C+G  FA +QIKAI+S LLR +EFE+  P PE    D +           VRY+RR
Sbjct:  308 LDNALKETLRLHPPLIILMRVAQDEFEVAG-----YPIHKGQMVAASPAISNRIPEDFPNPDDFDPDRYEKPRQED-LINRWTWIPFGAGKHRCVGAAFAQMQIKAIFSVLLREYEFEMAQP-PESYQNDHSKMVVQLARPAKVRYRRR 449          
BLAST of CX047206 vs. ExPASy Swiss-Prot
Match: CP51_DICDI (Probable lanosterol 14-alpha demethylase OS=Dictyostelium discoideum GN=cyp51 PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.019e-24
Identity = 64/150 (42.67%), Postives = 84/150 (56.00%), Query Frame = -2
Query:  264 MDVLYRCIKEALRLHPPLIMLLRSSHSDFTVQTREGKEYDIPKGHIVGTSPAFANRLPHIYKNPDSYDPDRFAPGREEDKAAGAFSYISFGGGRHGCLGEPFAYLQIKAIWSHLLRNFEFELISPFPEIDWNAXXXXXXXXXXVRYKRRE 713
            M+ L   I+E LRLHPPLI L+R       +   E K   IP GHI+  SP    RLP +YKNPDS++P RF     EDK    FS+I+FGGG+HGC GE F  LQIK IW+ L   +  E + P P  D+ +          V+Y +++
Sbjct:  327 MNRLETVIREVLRLHPPLIFLMRK-----VMTPMEYKGKTIPAGHILAVSPQVGMRLPTVYKNPDSFEPKRFDV---EDKTP--FSFIAFGGGKHGCPGENFGILQIKTIWTVLSTKYNLE-VGPVPPTDFTSLVAGPKGPCMVKYSKKQ 465          
BLAST of CX047206 vs. ExPASy Swiss-Prot
Match: CP51A_PONAB (Lanosterol 14-alpha demethylase OS=Pongo abelii GN=CYP51A1 PE=2 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 1.293e-22
Identity = 63/152 (41.45%), Postives = 92/152 (60.53%), Query Frame = -2
Query:  267 EMDVLYRCIKEALRLHPPLIMLLRSSHSDFTVQTREGKEYDIPKGHIVGTSPAFANRLPHIYKNPDSYDPDRFAPGREEDKAAGA-FSYISFGGGRHGCLGEPFAYLQIKAIWSHLLRNFEFELISP-FPEIDWNAXXXXXXXXXXVRYKRR 716
            ++++L RCIKE LRL PP+++++R +    T QT  G  Y IP GH V  SP    RL   +     ++PDR+    +++ A+G  F+Y+ FG GRH C+GE FAY+QIK IWS +LR +EF+LI   FP +++            +RYKRR
Sbjct:  359 DLNLLDRCIKETLRLRPPIMIMMRMAR---TPQTVAG--YTIPPGHQVCVSPTVNQRLKDSWVERLDFNPDRYL---QDNPASGEKFAYVPFGAGRHRCIGENFAYVQIKTIWSTMLRLYEFDLIDGYFPTVNYTT-MIHTPENPVIRYKRR 501          
BLAST of CX047206 vs. ExPASy Swiss-Prot
Match: CP51A_MACFA (Lanosterol 14-alpha demethylase OS=Macaca fascicularis GN=CYP51A1 PE=2 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 1.293e-22
Identity = 63/152 (41.45%), Postives = 92/152 (60.53%), Query Frame = -2
Query:  267 EMDVLYRCIKEALRLHPPLIMLLRSSHSDFTVQTREGKEYDIPKGHIVGTSPAFANRLPHIYKNPDSYDPDRFAPGREEDKAAGA-FSYISFGGGRHGCLGEPFAYLQIKAIWSHLLRNFEFELISP-FPEIDWNAXXXXXXXXXXVRYKRR 716
            ++++L RCIKE LRL PP+++++R +    T QT  G  Y IP GH V  SP    RL   +     ++PDR+    +++ A+G  F+Y+ FG GRH C+GE FAY+QIK IWS +LR +EF+LI   FP +++            +RYKRR
Sbjct:  359 DLNLLDRCIKETLRLRPPIMIMMRMAR---TPQTVAG--YTIPPGHQVCVSPTVNQRLKDSWVERLDFNPDRYL---QDNPASGEKFAYVPFGAGRHRCIGENFAYVQIKTIWSTMLRLYEFDLIDGYFPTVNYTT-MIHTPENPVIRYKRR 501          
BLAST of CX047206 vs. ExPASy Swiss-Prot
Match: CP51A_HUMAN (Lanosterol 14-alpha demethylase OS=Homo sapiens GN=CYP51A1 PE=1 SV=3)

HSP 1 Score: 106.686 bits (265), Expect = 1.293e-22
Identity = 63/152 (41.45%), Postives = 92/152 (60.53%), Query Frame = -2
Query:  267 EMDVLYRCIKEALRLHPPLIMLLRSSHSDFTVQTREGKEYDIPKGHIVGTSPAFANRLPHIYKNPDSYDPDRFAPGREEDKAAGA-FSYISFGGGRHGCLGEPFAYLQIKAIWSHLLRNFEFELISP-FPEIDWNAXXXXXXXXXXVRYKRR 716
            ++++L RCIKE LRL PP+++++R +    T QT  G  Y IP GH V  SP    RL   +     ++PDR+    +++ A+G  F+Y+ FG GRH C+GE FAY+QIK IWS +LR +EF+LI   FP +++            +RYKRR
Sbjct:  359 DLNLLDRCIKETLRLRPPIMIMMRMAR---TPQTVAG--YTIPPGHQVCVSPTVNQRLKDSWVERLDFNPDRYL---QDNPASGEKFAYVPFGAGRHRCIGENFAYVQIKTIWSTMLRLYEFDLIDGYFPTVNYTT-MIHTPENPVIRYKRR 501          
BLAST of CX047206 vs. ExPASy Swiss-Prot
Match: CP51A_BOVIN (Lanosterol 14-alpha demethylase OS=Bos taurus GN=CYP51A1 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.293e-22
Identity = 62/152 (40.79%), Postives = 89/152 (58.55%), Query Frame = -2
Query:  267 EMDVLYRCIKEALRLHPPLIMLLRSSHSDFTVQTREGKEYDIPKGHIVGTSPAFANRLPHIYKNPDSYDPDRFAPGREEDKAAGA-FSYISFGGGRHGCLGEPFAYLQIKAIWSHLLRNFEFELISP-FPEIDWNAXXXXXXXXXXVRYKRR 716
            ++++L RCIKE LRL PP++ ++R + +  TV       Y IP GH V  SP    RL   +     ++PDR+    E+  A+G  F+Y+ FG GRH C+GE FAY+QIK IWS +LR +EF+LI   FP +++            +RYKRR
Sbjct:  358 DLNLLDRCIKETLRLRPPIMTMMRLAKTPLTVAG-----YTIPPGHQVCVSPTVNQRLKDSWVERLDFNPDRYL---EDSPASGEKFAYVPFGAGRHRCIGENFAYVQIKTIWSTMLRLYEFDLIDGYFPTVNYTT-MIHTPEKPIIRYKRR 500          
BLAST of CX047206 vs. ExPASy Swiss-Prot
Match: CP51A_RAT (Lanosterol 14-alpha demethylase OS=Rattus norvegicus GN=Cyp51a1 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.688e-22
Identity = 63/152 (41.45%), Postives = 92/152 (60.53%), Query Frame = -2
Query:  267 EMDVLYRCIKEALRLHPPLIMLLRSSHSDFTVQTREGKEYDIPKGHIVGTSPAFANRLPHIYKNPDSYDPDRFAPGREEDKAAGA-FSYISFGGGRHGCLGEPFAYLQIKAIWSHLLRNFEFELISP-FPEIDWNAXXXXXXXXXXVRYKRR 716
            ++++L RCIKE LRL PP++ ++R +    T QT  G  Y IP GH V  SP    RL   +     ++PDR+    +++ A+G  F+Y+ FG GRH C+GE FAY+QIK IWS +LR +EF+LI+  FP +++            +RYKRR
Sbjct:  359 DLNLLDRCIKETLRLRPPIMTMMRMAK---TPQTVAG--YTIPPGHQVCVSPTVNQRLKDSWVERLDFNPDRYL---QDNPASGEKFAYVPFGAGRHRCIGENFAYVQIKTIWSTMLRLYEFDLINGYFPSVNYTT-MIHTPENPVIRYKRR 501          
BLAST of CX047206 vs. ExPASy Swiss-Prot
Match: CP51A_MOUSE (Lanosterol 14-alpha demethylase OS=Mus musculus GN=Cyp51a1 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.205e-22
Identity = 63/152 (41.45%), Postives = 92/152 (60.53%), Query Frame = -2
Query:  267 EMDVLYRCIKEALRLHPPLIMLLRSSHSDFTVQTREGKEYDIPKGHIVGTSPAFANRLPHIYKNPDSYDPDRFAPGREEDKAAGA-FSYISFGGGRHGCLGEPFAYLQIKAIWSHLLRNFEFELISP-FPEIDWNAXXXXXXXXXXVRYKRR 716
            ++++L RCIKE LRL PP++ ++R +    T QT  G  Y IP GH V  SP    RL   +     ++PDR+    +++ A+G  F+Y+ FG GRH C+GE FAY+QIK IWS +LR +EF+LI+  FP +++            +RYKRR
Sbjct:  359 DLNLLDRCIKETLRLRPPIMTMMRMAK---TPQTVAG--YTIPPGHQVCVSPTVNQRLKDSWAERLDFNPDRYL---QDNPASGEKFAYVPFGAGRHRCVGENFAYVQIKTIWSTMLRLYEFDLINGYFPTVNYTT-MIHTPENPVIRYKRR 501          
The following BLAST results are available for this feature:
BLAST of CX047206 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
CP51_SORBI6.532e-7585.81Obtusifoliol 14-alpha demethylase OS=Sorghum bicol... [more]
CP51_WHEAT2.745e-7384.52Obtusifoliol 14-alpha demethylase (Fragment) OS=Tr... [more]
CP51_MYCVP2.131e-2544.30Lanosterol 14-alpha demethylase OS=Mycobacterium v... [more]
CP51_DICDI4.019e-2442.67Probable lanosterol 14-alpha demethylase OS=Dictyo... [more]
CP51A_PONAB1.293e-2241.45Lanosterol 14-alpha demethylase OS=Pongo abelii GN... [more]
CP51A_MACFA1.293e-2241.45Lanosterol 14-alpha demethylase OS=Macaca fascicul... [more]
CP51A_HUMAN1.293e-2241.45Lanosterol 14-alpha demethylase OS=Homo sapiens GN... [more]
CP51A_BOVIN1.293e-2240.79Lanosterol 14-alpha demethylase OS=Bos taurus GN=C... [more]
CP51A_RAT1.688e-2241.45Lanosterol 14-alpha demethylase OS=Rattus norvegic... [more]
CP51A_MOUSE2.205e-2241.45Lanosterol 14-alpha demethylase OS=Mus musculus GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_12G07_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-12G07-M13-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047206 ID=CX047206; Name=CX047206; organism=Citrus sinensis; type=EST; length=717bp
CATGATGCCAAAGAAATTTACGCTTGACGCAAAAGCTAATCTACATAATT
TGTCACAAGTACGGGAATCAGGAAAGCAAAGGTTACAACGCCGTTAAATA
AATTTAAAAAAAAAAAGAGAGAGAGAGAGAGAGAAGAAAAAAGCCAAGAA
CCTCTCCGATAACACATAATAAGACTATGGCAGCAGCAGTTCAAACAAAA
CTTAGTCTATAACATCCCAGACAACATACTTGCTCTAAGTAGTTCCATCT
AGTCAACAGAAAGTTCCCTGCGCTTGTAACGCACCATCACCTTTCCTTTG
ACACCAACAACCATTGCATTCCAATCAATCTCAGGGAAAGGAGATATCAG
CTCAAATTCAAAATTTCTTAACAAATGGCTCCATATTGCCTTTATCTGCA
GATATGCAAAAGGCTCACCAAGACATCCATGCCTACCCCCACCAAACGAA
ATATATGAGAATGCCCCAGCAGCCTTATCTTCTTCTCTTCCAGGAGCAAA
CCTGTCAGGATCGTAACTGTCTGGATTCTTGTAAATATGAGGAAGCCGGT
TTGCAAATGCTGGTGATGTTCCAACTATGTGTCCCTTTGGTATGTCGTAT
TCTTTACCTTCACGGGTCTGCACAGTAAAATCACTGTGTGAGCTTCGCAA
AAGCATGATCAGTGGAGGGTGTAGTCTCAGGGCTTCCTTAATGCATCGAT
AGAGGACATCCATCTCA
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