CX047199

Overview
NameCX047199
Unique NameCX047199
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length812
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX047199_ssr88 microsatellite CX047199_ssr88:88..102. BLAST: Citrus ESTs to Prunus persica proteins V1
CX047199_ssr121 microsatellite CX047199_ssr121:121..135. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig9309 contig Csv1_Contig9309:518..1320. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX047199 vs. ExPASy Swiss-Prot
Match: LARP7_XENTR (La-related protein 7 OS=Xenopus tropicalis GN=larp7 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.284e-11
Identity = 55/190 (28.95%), Postives = 88/190 (46.32%), Query Frame = 3 
Query:  192 KDKKEKKDHQHGGLNDESIQKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLAXXXXXXXXXXXXEDGKKIKRQNPLTESDLEELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTXXXXXXXXXXXXXXXXMLFSNKLHAFVEYESVELAEKAIAELND 761
            KD+++KK  +   L    +  +  QV+++F D+NL     L   I K  +GY+ IS +ASF K+K I +    +A              G KI+R+ PL E   +++ SR V  E LP++  H  + ++F   G V  +   +P+                      K  AF+E+E+ E A KAI  LN+
Sbjct:   23 KDREKKKRSRVKQL----LADIAKQVDFWFGDVNLHKDRFLREQIEKTRDGYIDISLLASFNKMKKITTDSKLIARAVKNSSVVEINLSGTKIRRRFPLGEKP-QDVDSRTVYVELLPKNVTHSWIERVFGKYGMV--VYVSIPRYKSTG---------------DPKGFAFIEFETQEQAAKAIEVLNN 190
The following BLAST results are available for this feature:
BLAST of CX047199 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
LARP7_XENTR8.284e-1128.95La-related protein 7 OS=Xenopus tropicalis GN=larp... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS09_12G03_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-12G03-M5-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047199 ID=CX047199; Name=CX047199; organism=Citrus sinensis; type=EST; length=812bp
TTCCGGTTCACCATCAGATGCATCACCAGCATCATGTCCCGGTTCAGAAT
TATCATCAGCAGCAGCATCAACATCACAGGAATCACAATCATCATCATCA
TCGGCATCAGAATCATCATCATAATAATAATAATAGTCACCATCAGAATA
ATCAGTATGAAGATCAGCAAGAGGGTGAGGTTCCAGGGGTCAAGGATAAG
AAGGAGAAGAAGGATCATCAACATGGTGGATTAAATGATGAATCTATTCA
GAAAGTTTTGAATCAGGTGGAGTATTATTTCAGTGATTTAAACTTGGCCA
CTACTGATCATCTTATAAGGTTCATCCTCAAGGATCCCGAAGGATACGTG
CCAATATCAACTGTGGCTTCTTTTAAGAAGATTAAAGCTATCATAAGCAG
TCATTCCCATCTTGCTAGTGTTCTGCGGAAGTCTTCAAAACTTGTTGTTA
GTGAAGATGGAAAGAAAATAAAACGTCAGAATCCCTTGACCGAGTCAGAT
TTGGAAGAATTGCAATCTCGCATTGTTGTTGCTGAAAATTTACCTGAGGA
TCATTGCCACCAAAATCTTATGAAGATTTTCTCTGCTGTTGGGAGTGTGA
AGACTATTCGTACATGTTTGCCTCAAACTTCTGGCGGAGGAGCTTCTTCA
GGATCTAGATCAGCAAAATCTGAGGGCATGCTTTTCAGTAACAAGTTGCA
CGCATTTGTTGAATATGAATCTGTTGAGCTGGCTGAGAAAGCGATTGCAG
AGCTAAATGATGAGGGTAACTGGAGAAGTGGCCTAAGGGTCCGTTTAATG
CTTAGACGTGGG
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