CX047198

Overview
NameCX047198
Unique NameCX047198
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length386
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4072 contig Csv1_Contig4072:70..455. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX047198 vs. ExPASy Swiss-Prot
Match: TPIS_COPJA (Triosephosphate isomerase, cytosolic OS=Coptis japonica PE=2 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 1.357e-44
Identity = 89/118 (75.42%), Postives = 94/118 (79.66%), Query Frame = -2
Query:    2 MARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXVKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYAL 355
            M RKFFVGGNWKCNGTSEEVKKIV+ LNEAE                    VK+LLR+DFHVAAQNCWV+KGGAFTGEVSAEMLVNL IPWVILGHSERRALLNESN+FVGDK AYAL
Sbjct:    1 MGRKFFVGGNWKCNGTSEEVKKIVTLLNEAEVPSEDVVEVVVSPPYVFLPFVKNLLRADFHVAAQNCWVKKGGAFTGEVSAEMLVNLGIPWVILGHSERRALLNESNEFVGDKTAYAL 118          
BLAST of CX047198 vs. ExPASy Swiss-Prot
Match: TPIS_ARATH (Triosephosphate isomerase, cytosolic OS=Arabidopsis thaliana GN=CTIMC PE=1 SV=2)

HSP 1 Score: 175.252 bits (443), Expect = 8.797e-44
Identity = 88/118 (74.58%), Postives = 95/118 (80.51%), Query Frame = -2
Query:    2 MARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXVKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYAL 355
            MARKFFVGGNWKCNGT+EEVKKIV+TLNEA+                    VKS LRSDF VAAQNCWV+KGGAFTGEVSAEMLVNL IPWVILGHSERRA+LNES++FVGDKVAYAL
Sbjct:    1 MARKFFVGGNWKCNGTAEEVKKIVNTLNEAQVPSQDVVEVVVSPPYVFLPLVKSTLRSDFFVAAQNCWVKKGGAFTGEVSAEMLVNLDIPWVILGHSERRAILNESSEFVGDKVAYAL 118          
BLAST of CX047198 vs. ExPASy Swiss-Prot
Match: TPIS_PETHY (Triosephosphate isomerase, cytosolic OS=Petunia hybrida GN=TPIP1 PE=2 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 9.726e-43
Identity = 86/118 (72.88%), Postives = 93/118 (78.81%), Query Frame = -2
Query:    2 MARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXVKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYAL 355
            M RKFFVGGNWKCNGT+EEVKKI++TLN A+                    VK+ LR DFHVAAQNCWV+KGGAFTGEVSAEMLVNLSIPWVILGHSERRALL ESN+FVGDKVAYAL
Sbjct:    1 MGRKFFVGGNWKCNGTAEEVKKILATLNAADVPSQDVVEVVVSPPYVFLPLVKNELRPDFHVAAQNCWVKKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLGESNEFVGDKVAYAL 118          
BLAST of CX047198 vs. ExPASy Swiss-Prot
Match: TPIS_MAIZE (Triosephosphate isomerase, cytosolic OS=Zea mays PE=3 SV=3)

HSP 1 Score: 167.933 bits (424), Expect = 1.405e-41
Identity = 82/118 (69.49%), Postives = 91/118 (77.12%), Query Frame = -2
Query:    2 MARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXVKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYAL 355
            M RKFFVGGNWKCNGT+++V+KIV TLNE +                    VKS LR +FHVAAQNCWV+KGGAFTGEVSAEMLVNL +PWVILGHSERRALL ESN+FVGDKVAYAL
Sbjct:    1 MGRKFFVGGNWKCNGTTDQVEKIVKTLNEGQVPPSDVVEVVVSPPYVFLPVVKSQLRQEFHVAAQNCWVKKGGAFTGEVSAEMLVNLGVPWVILGHSERRALLGESNEFVGDKVAYAL 118          
BLAST of CX047198 vs. ExPASy Swiss-Prot
Match: TPIS_ORYSJ (Triosephosphate isomerase, cytosolic OS=Oryza sativa subsp. japonica GN=TPI PE=1 SV=3)

HSP 1 Score: 159.844 bits (403), Expect = 3.825e-39
Identity = 80/118 (67.80%), Postives = 88/118 (74.58%), Query Frame = -2
Query:    2 MARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXVKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYAL 355
            M RKFFVGGNWKCNGT+++V KIV  LNE +                    VKS LR +  VAAQNCWV+KGGAFTGEVSAEMLVNLSIPWVILGHSERR+LL ESN+FVGDKVAYAL
Sbjct:    1 MGRKFFVGGNWKCNGTTDQVDKIVKILNEGQIASTDVVEVVVSPPYVFLPVVKSQLRPEIQVAAQNCWVKKGGAFTGEVSAEMLVNLSIPWVILGHSERRSLLGESNEFVGDKVAYAL 118          
BLAST of CX047198 vs. ExPASy Swiss-Prot
Match: TPIS_HORVU (Triosephosphate isomerase, cytosolic OS=Hordeum vulgare PE=1 SV=3)

HSP 1 Score: 150.214 bits (378), Expect = 3.031e-36
Identity = 74/118 (62.71%), Postives = 85/118 (72.03%), Query Frame = -2
Query:    2 MARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXVKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYAL 355
            M RKFFVGGNWKCNGT E+V+ IV TLN  +                    VK+ LR +  VAAQNCWV+KGGAFTGEVSAEML NL +PWVILGHSERR+LL ES++FVG+KVAYAL
Sbjct:    1 MGRKFFVGGNWKCNGTVEQVEAIVQTLNAGQIVSPDVVEVVVSPPYVFLPIVKAKLRPEIQVAAQNCWVKKGGAFTGEVSAEMLANLGVPWVILGHSERRSLLGESSEFVGEKVAYAL 118          
BLAST of CX047198 vs. ExPASy Swiss-Prot
Match: TPIS_SECCE (Triosephosphate isomerase, cytosolic OS=Secale cereale PE=2 SV=3)

HSP 1 Score: 149.443 bits (376), Expect = 5.169e-36
Identity = 75/118 (63.56%), Postives = 85/118 (72.03%), Query Frame = -2
Query:    2 MARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXVKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYAL 355
            M RKFFVGGNWKCNGT  +V+ IV+TLN  +                    VK  LR +  VAAQNCWV+KGGAFTGEVSAEMLVNL IPWVILGHSERR+LL ES++FVG+KVAYAL
Sbjct:    1 MGRKFFVGGNWKCNGTVSQVETIVNTLNAGQIASPDVVEVVVSPPYVFLPTVKDKLRPEIQVAAQNCWVKKGGAFTGEVSAEMLVNLGIPWVILGHSERRSLLAESSEFVGEKVAYAL 118          
BLAST of CX047198 vs. ExPASy Swiss-Prot
Match: TPIS_STELP (Triosephosphate isomerase, cytosolic OS=Stellaria longipes GN=TPI PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 4.838e-34
Identity = 71/117 (60.68%), Postives = 77/117 (65.81%), Query Frame = -2
Query:    5 MARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXVKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYA 355
            M RKFFVGGNWKCNGT E V KIV TLNE                        + L+ +  VAAQNCWV+KGGAFTGEVSA+ML NL I WVILGHSERR LL ESN+FVG K AYA
Sbjct:    1 MGRKFFVGGNWKCNGTQESVSKIVDTLNEPTIAANDVVTVVVSPPYVFLPDENAELKHEIQVAAQNCWVKKGGAFTGEVSAQMLANLGITWVILGHSERRTLLGESNEFVGKKAAYA 117          
BLAST of CX047198 vs. ExPASy Swiss-Prot
Match: TPIC_SPIOL (Triosephosphate isomerase, chloroplastic OS=Spinacia oleracea GN=TPIP1 PE=1 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 4.386e-27
Identity = 62/123 (50.41%), Postives = 74/123 (60.16%), Query Frame = -2
Query:    2 IVVMAR--KFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXVKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYAL 364
            +V MA   KFFVGGNWKCNGT E + K+VS LN A                      KS L     ++AQNCW+ KGGAFTGE+S E L +L   WVILGHSERR ++ E N+F+G K AYAL
Sbjct:   64 VVAMAGSGKFFVGGNWKCNGTKESITKLVSDLNSATLEADVDVVVAPPFVYIDQV--KSSLTGRVEISAQNCWIGKGGAFTGEISVEQLKDLGCQWVILGHSERRHVIGEQNEFIGKKAAYAL 184          
BLAST of CX047198 vs. ExPASy Swiss-Prot
Match: TPIC_SECCE (Triosephosphate isomerase, chloroplastic OS=Secale cereale PE=1 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 2.177e-26
Identity = 59/115 (51.30%), Postives = 71/115 (61.74%), Query Frame = -2
Query:    2 KFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXVKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYAL 346
            KFFVGGNWKCNGT E + K+VS LN A                      KS L     V+AQN W+ KGGAFTGE+SAE LV++   WVILGHSERR ++ E ++F+G K AYAL
Sbjct:   48 KFFVGGNWKCNGTKESISKLVSDLNAATLESDVDVVVAPPFIYIDQV--KSSLTDRIEVSAQNTWIGKGGAFTGEISAEQLVDIGCQWVILGHSERRHVIGEDDEFIGKKAAYAL 160          
The following BLAST results are available for this feature:
BLAST of CX047198 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 129
Match NameE-valueIdentityDescription
TPIS_COPJA1.357e-4475.42Triosephosphate isomerase, cytosolic OS=Coptis jap... [more]
TPIS_ARATH8.797e-4474.58Triosephosphate isomerase, cytosolic OS=Arabidopsi... [more]
TPIS_PETHY9.726e-4372.88Triosephosphate isomerase, cytosolic OS=Petunia hy... [more]
TPIS_MAIZE1.405e-4169.49Triosephosphate isomerase, cytosolic OS=Zea mays P... [more]
TPIS_ORYSJ3.825e-3967.80Triosephosphate isomerase, cytosolic OS=Oryza sati... [more]
TPIS_HORVU3.031e-3662.71Triosephosphate isomerase, cytosolic OS=Hordeum vu... [more]
TPIS_SECCE5.169e-3663.56Triosephosphate isomerase, cytosolic OS=Secale cer... [more]
TPIS_STELP4.838e-3460.68Triosephosphate isomerase, cytosolic OS=Stellaria ... [more]
TPIC_SPIOL4.386e-2750.41Triosephosphate isomerase, chloroplastic OS=Spinac... [more]
TPIC_SECCE2.177e-2651.30Triosephosphate isomerase, chloroplastic OS=Secale... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_12G02_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-12G02-M3-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047198 ID=CX047198; Name=CX047198; organism=Citrus sinensis; type=EST; length=386bp
AAAGTGCATAAGCAACTTTATCTCCAACAAAATCATTTGACTCATTCAAA
AGAGCTCTTCTTTCAGAATGACCAAGAATGACCCAAGGAATGCTCAAGTT
GACAAGCATCTCAGCACTAACTTCCCCGGTAAAAGCACCACCTTTGCGAA
CCCAGCAATTTTGAGCGGCAACATGGAAATCAGACCGCAACAGACTCTTG
ACCAAAGGAAGAAACACAAACGGAGGGCTTACAACAACCTCCACAACATC
CTCAGAAGGAACTTCAGCTTCATTCAATGTAGAAACAATCTTCTTCACTT
CCTCAGATGTCCCATTGCATTTCCAGTTGCCGCCGACGAAGAATTTGCGG
GCCATGACGACGATTGAATTTTGTTTGGTTTGGCCT
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