CX047178

Overview
NameCX047178
Unique NameCX047178
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length934
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047178 vs. ExPASy Swiss-Prot
Match: AMP1D_ARATH (Methionine aminopeptidase 1D, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=MAP1D PE=2 SV=1)

HSP 1 Score: 394.815 bits (1013), Expect = 3.652e-109
Identity = 182/217 (83.87%), Postives = 202/217 (93.09%), Query Frame = -3
Query:  282 VKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTKDCLHKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPVVLHYRNNDHGRMVLNQTFTIEPMLTIGSINPVMWDDNWTIVTEDGSLSAQFEHTILITRDGAEILTQC 932
            VKPG+TTDEID+AVH MII+NGAYPSPLGYGGFPKSVCTSVNECICHGIPDSR LEDGD INIDVTVYLNGYHGDTSATFFCG+VD++A+ LV+VTK+ L KAIS+C PG+EYKKIGK I D AD++ YGVVRQFVGHG+G VFHADPVVLH+RNN+ GRMVLNQTFTIEPMLTIGS NP+MWDDNWT+VTED SLSAQFEHTILIT+DGAEILT+C
Sbjct:  134 VKPGVTTDEIDEAVHNMIIENGAYPSPLGYGGFPKSVCTSVNECICHGIPDSRPLEDGDIINIDVTVYLNGYHGDTSATFFCGNVDEKAKKLVEVTKESLDKAISICGPGVEYKKIGKVIHDLADKHKYGVVRQFVGHGVGSVFHADPVVLHFRNNEAGRMVLNQTFTIEPMLTIGSRNPIMWDDNWTVVTEDASLSAQFEHTILITKDGAEILTKC 350          
BLAST of CX047178 vs. ExPASy Swiss-Prot
Match: AMP1B_ARATH (Methionine aminopeptidase 1B, chloroplastic OS=Arabidopsis thaliana GN=MAP1B PE=2 SV=2)

HSP 1 Score: 329.331 bits (843), Expect = 1.885e-89
Identity = 148/217 (68.20%), Postives = 181/217 (83.41%), Query Frame = -3
Query:  282 VKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTKDCLHKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPVVLHYRNNDHGRMVLNQTFTIEPMLTIGSINPVMWDDNWTIVTEDGSLSAQFEHTILITRDGAEILTQC 932
            VKP +TT+EIDKAVH MII+ GAYPSPLGYGGFPKSVCTSVNEC+CHGIPDSR L+ GD INIDVTVYL+GYHGDTS TFFCG+VD+  + LVKVT++CL + I+VC  G  +KKIGK I +HA+++ Y VV +FVGHG+G VFH++P++ HYRN++ G MV  QTFTIEP+LTIG+   V W DNWT +T DG ++AQFEHTILITR G+EILT+C
Sbjct:  153 VKPSVTTNEIDKAVHDMIIEAGAYPSPLGYGGFPKSVCTSVNECMCHGIPDSRQLQSGDIINIDVTVYLDGYHGDTSRTFFCGEVDEGFKRLVKVTEECLERGIAVCKDGASFKKIGKRISEHAEKFGYNVVERFVGHGVGPVFHSEPLIYHYRNDEPGLMVEGQTFTIEPILTIGTTECVTWPDNWTTLTADGGVAAQFEHTILITRTGSEILTKC 369          
BLAST of CX047178 vs. ExPASy Swiss-Prot
Match: AMP1C_ARATH (Methionine aminopeptidase 1C, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=MAP1C PE=2 SV=2)

HSP 1 Score: 291.582 bits (745), Expect = 4.355e-78
Identity = 139/217 (64.06%), Postives = 169/217 (77.88%), Query Frame = -3
Query:  288 VKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTKDCLHKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPVVLHYRNNDH--GRMVLNQTFTIEPMLTIGSINPVMWDDNWTIVTEDGSLSAQFEHTILITRDGAEILT 932
            V+P +TTDEIDKAVHQM+I+ GAYPSPLGYGGFPKSVCTSVNEC+ HGIPDSR L++GD INIDV VYL+GYHGDTS TF CGDV+   + LVKVT++CL K ISVC  G  +K+IGK I +HA +Y Y + R F+GHG+G V H++P++  + N D+    M+  QTFT+EP+LTIG+   V W D WTIVT DG  +AQFEHTILIT  GAEILT
Sbjct:  126 VRPFVTTDEIDKAVHQMVIEFGAYPSPLGYGGFPKSVCTSVNECMFHGIPDSRPLQNGDIINIDVAVYLDGYHGDTSKTFLCGDVNGSLKQLVKVTEECLEKGISVCKDGASFKQIGKIISEHAAKYGYNMER-FIGHGVGTVLHSEPLIYLHSNYDYELEYMIEGQTFTLEPILTIGTTEFVTWPDKWTIVTADGGPAAQFEHTILITTTGAEILT 341          
BLAST of CX047178 vs. ExPASy Swiss-Prot
Match: AMPM_MYCTU (Methionine aminopeptidase OS=Mycobacterium tuberculosis GN=map PE=1 SV=1)

HSP 1 Score: 250.751 bits (639), Expect = 8.518e-66
Identity = 119/216 (55.09%), Postives = 151/216 (69.91%), Query Frame = -3
Query:  288 VKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTKDCLHKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPVVLHY-RNNDHGRMVLNQTFTIEPMLTIGSINPVMWDDNWTIVTEDGSLSAQFEHTILITRDGAEILT 932
            V PG+TTDE+D+  H+ ++DNGAYPS LGY GFPKS CTS+NE ICHGIPDS  + DGD +NIDVT Y+ G HGDT+ATF  GDV DE R LV  T++   +AI+   PG     IG+ I+ +A+R+ Y VVR F GHGIG  FH   VVLHY +      M    TFTIEPM+ +G+++  +WDD WT+VT+D   +AQFEHT+L+T  G EILT
Sbjct:   68 VAPGVTTDELDRIAHEYLVDNGAYPSTLGYKGFPKSCCTSLNEVICHGIPDSTVITDGDIVNIDVTAYIGGVHGDTNATFPAGDVADEHRLLVDRTREATMRAINTVKPGRALSVIGRVIESYANRFGYNVVRDFTGHGIGTTFHNGLVVLHYDQPAVETIMQPGMTFTIEPMINLGALDYEIWDDGWTVVTKDRKWTAQFEHTLLVTDTGVEILT 283          
BLAST of CX047178 vs. ExPASy Swiss-Prot
Match: AMPM_MYCBO (Methionine aminopeptidase OS=Mycobacterium bovis GN=map PE=3 SV=1)

HSP 1 Score: 250.751 bits (639), Expect = 8.518e-66
Identity = 119/216 (55.09%), Postives = 151/216 (69.91%), Query Frame = -3
Query:  288 VKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTKDCLHKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPVVLHY-RNNDHGRMVLNQTFTIEPMLTIGSINPVMWDDNWTIVTEDGSLSAQFEHTILITRDGAEILT 932
            V PG+TTDE+D+  H+ ++DNGAYPS LGY GFPKS CTS+NE ICHGIPDS  + DGD +NIDVT Y+ G HGDT+ATF  GDV DE R LV  T++   +AI+   PG     IG+ I+ +A+R+ Y VVR F GHGIG  FH   VVLHY +      M    TFTIEPM+ +G+++  +WDD WT+VT+D   +AQFEHT+L+T  G EILT
Sbjct:   68 VAPGVTTDELDRIAHEYLVDNGAYPSTLGYKGFPKSCCTSLNEVICHGIPDSTVITDGDIVNIDVTAYIGGVHGDTNATFPAGDVADEHRLLVDRTREATMRAINTVKPGRALSVIGRVIESYANRFGYNVVRDFTGHGIGTTFHNGLVVLHYDQPAVETIMQPGMTFTIEPMINLGALDYEIWDDGWTVVTKDRKWTAQFEHTLLVTDTGVEILT 283          
BLAST of CX047178 vs. ExPASy Swiss-Prot
Match: AMPM1_DICDI (Methionine aminopeptidase 1 OS=Dictyostelium discoideum GN=metap1 PE=3 SV=1)

HSP 1 Score: 250.366 bits (638), Expect = 1.113e-65
Identity = 113/216 (52.31%), Postives = 150/216 (69.44%), Query Frame = -3
Query:  285 KPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTKDCLHKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPVVLHY-RNNDHGRMVLNQTFTIEPMLTIGSINPVMWDDNWTIVTEDGSLSAQFEHTILITRDGAEILTQ 929
            K G+TT+E+D  VH  +I+ GAYPSPL Y  FPKS CTS+NE ICHGIPD R L DGD +N+DVT+Y  G+H D + T+  G+VD+  +NLVK   DCL  A+++C PG  Y+++G  IQ HA++  + VV+ F GHGIGR+FH +P V HY +N   G M +   FTIEPM+  G+    +W D+WT VT DG  SAQFEHT++IT  G E+LT+
Sbjct:  140 KVGMTTEELDIIVHNAVIERGAYPSPLNYYKFPKSCCTSLNEVICHGIPDERPLRDGDILNVDVTLYWKGFHSDLNETYLIGNVDERGKNLVKCAYDCLELAVAMCKPGTLYRELGDAIQKHANKQGFSVVKNFCGHGIGRLFHCNPTVPHYSKNKAVGAMKVGHVFTIEPMINEGTWQDEIWPDSWTAVTADGKRSAQFEHTLVITETGCEVLTK 355          
BLAST of CX047178 vs. ExPASy Swiss-Prot
Match: AMPM1_BOVIN (Methionine aminopeptidase 1 OS=Bos taurus GN=METAP1 PE=2 SV=1)

HSP 1 Score: 249.595 bits (636), Expect = 1.898e-65
Identity = 118/217 (54.38%), Postives = 145/217 (66.82%), Query Frame = -3
Query:  285 VKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTKDCLHKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPVVLHY-RNNDHGRMVLNQTFTIEPMLTIGSINPVMWDDNWTIVTEDGSLSAQFEHTILITRDGAEILTQ 932
            +KPG+TT+EID AVH   I    YPSPL Y  FPKS CTSVNE ICHGIPD R L++GD +N+D+T+Y NGYHGD + TFF GDVD+ AR LV+ T +CL +AI    PG+ Y+++G  IQ HA    + VVR + GHGI ++FH  P V HY +N   G M     FTIEPM+  G      W D WT VT DG  SAQFEHT+L+T  G EILT+
Sbjct:  157 IKPGVTTEEIDHAVHLACIARNCYPSPLNYYNFPKSCCTSVNEVICHGIPDRRPLQEGDIVNVDITLYRNGYHGDLNETFFVGDVDEGARKLVQTTYECLMQAIDAVKPGVRYRELGNIIQKHAQANGFSVVRSYCGHGIHKLFHTAPNVPHYSKNKAVGVMKAGHVFTIEPMICEGGWQDETWPDGWTAVTRDGKRSAQFEHTLLVTDTGCEILTR 373          
BLAST of CX047178 vs. ExPASy Swiss-Prot
Match: AMP1D_DICDI (Methionine aminopeptidase 1D, mitochondrial OS=Dictyostelium discoideum GN=map1d PE=3 SV=1)

HSP 1 Score: 249.595 bits (636), Expect = 1.898e-65
Identity = 122/220 (55.45%), Postives = 152/220 (69.09%), Query Frame = -3
Query:  285 VKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTKDCLHKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPVVLHYRNNDHGRMVLNQTFTIEPMLTIGSINPV----MWDDNWTIVTEDGSLSAQFEHTILITRDGAEILTQ 932
            V+PGITTDEIDK VHQ IID GAYPSPLGY GFPKS+CTS+NE +CHGIPD R LE GD + IDVT+Y NGYHGDT ATF  G++D  ++ L++ T+  L+ AI     G  + KIGK IQ  A++Y+  V  +F GHGIG++FH  P V    N     M     FTIEP+L + S +P     MWDD WT+ + +G  SAQFEHTIL+T+DG EILT+
Sbjct:  186 VRPGITTDEIDKLVHQNIIDRGAYPSPLGYKGFPKSICTSINEVLCHGIPDDRPLEFGDIVKIDVTLYYNGYHGDTCATFPVGEIDSSSKRLIEATEKALYAAIGEVKDGALFNKIGKKIQLVANKYSLSVTPEFTGHGIGQLFHTAPFVFQCANEFDSVMKEGMIFTIEPVL-VESTSPYAEWKMWDDKWTVSSREGGWSAQFEHTILVTKDGYEILTK 404          
BLAST of CX047178 vs. ExPASy Swiss-Prot
Match: AMPM1_PONAB (Methionine aminopeptidase 1 OS=Pongo abelii GN=METAP1 PE=2 SV=1)

HSP 1 Score: 249.21 bits (635), Expect = 2.478e-65
Identity = 118/217 (54.38%), Postives = 145/217 (66.82%), Query Frame = -3
Query:  285 VKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTKDCLHKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPVVLHY-RNNDHGRMVLNQTFTIEPMLTIGSINPVMWDDNWTIVTEDGSLSAQFEHTILITRDGAEILTQ 932
            +KPG+TT+EID AVH   I    YPSPL Y  FPKS CTSVNE ICHGIPD R L++GD +N+D+T+Y NGYHGD + TFF G+VDD AR LV+ T +CL +AI    PG+ Y+++G  IQ HA    + VVR + GHGI ++FH  P V HY +N   G M     FTIEPM+  G      W D WT VT DG  SAQFEHT+L+T  G EILT+
Sbjct:  157 IKPGVTTEEIDHAVHLACIARNCYPSPLNYYNFPKSCCTSVNEVICHGIPDRRPLQEGDIVNVDITLYRNGYHGDLNETFFVGEVDDGARKLVQTTYECLMQAIDAVKPGVRYRELGNIIQKHAQANGFSVVRSYCGHGIHKLFHTAPNVPHYAKNKAVGVMKSGHVFTIEPMICEGGWQDETWPDGWTAVTRDGKRSAQFEHTLLVTDTGCEILTR 373          
BLAST of CX047178 vs. ExPASy Swiss-Prot
Match: AMPM1_HUMAN (Methionine aminopeptidase 1 OS=Homo sapiens GN=METAP1 PE=1 SV=2)

HSP 1 Score: 249.21 bits (635), Expect = 2.478e-65
Identity = 118/217 (54.38%), Postives = 145/217 (66.82%), Query Frame = -3
Query:  285 VKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTKDCLHKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPVVLHY-RNNDHGRMVLNQTFTIEPMLTIGSINPVMWDDNWTIVTEDGSLSAQFEHTILITRDGAEILTQ 932
            +KPG+TT+EID AVH   I    YPSPL Y  FPKS CTSVNE ICHGIPD R L++GD +N+D+T+Y NGYHGD + TFF G+VDD AR LV+ T +CL +AI    PG+ Y+++G  IQ HA    + VVR + GHGI ++FH  P V HY +N   G M     FTIEPM+  G      W D WT VT DG  SAQFEHT+L+T  G EILT+
Sbjct:  157 IKPGVTTEEIDHAVHLACIARNCYPSPLNYYNFPKSCCTSVNEVICHGIPDRRPLQEGDIVNVDITLYRNGYHGDLNETFFVGEVDDGARKLVQTTYECLMQAIDAVKPGVRYRELGNIIQKHAQANGFSVVRSYCGHGIHKLFHTAPNVPHYAKNKAVGVMKSGHVFTIEPMICEGGWQDETWPDGWTAVTRDGKRSAQFEHTLLVTDTGCEILTR 373          
The following BLAST results are available for this feature:
BLAST of CX047178 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
AMP1D_ARATH3.652e-10983.87Methionine aminopeptidase 1D, chloroplastic/mitoch... [more]
AMP1B_ARATH1.885e-8968.20Methionine aminopeptidase 1B, chloroplastic OS=Ara... [more]
AMP1C_ARATH4.355e-7864.06Methionine aminopeptidase 1C, chloroplastic/mitoch... [more]
AMPM_MYCTU8.518e-6655.09Methionine aminopeptidase OS=Mycobacterium tubercu... [more]
AMPM_MYCBO8.518e-6655.09Methionine aminopeptidase OS=Mycobacterium bovis G... [more]
AMPM1_DICDI1.113e-6552.31Methionine aminopeptidase 1 OS=Dictyostelium disco... [more]
AMPM1_BOVIN1.898e-6554.38Methionine aminopeptidase 1 OS=Bos taurus GN=METAP... [more]
AMP1D_DICDI1.898e-6555.45Methionine aminopeptidase 1D, mitochondrial OS=Dic... [more]
AMPM1_PONAB2.478e-6554.38Methionine aminopeptidase 1 OS=Pongo abelii GN=MET... [more]
AMPM1_HUMAN2.478e-6554.38Methionine aminopeptidase 1 OS=Homo sapiens GN=MET... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_12F03_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-12F03-K5-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047178 ID=CX047178; Name=CX047178; organism=Citrus sinensis; type=EST; length=934bp
CTTTTTTTTGACAAACGATGCAAATACCATTTAAGAATTATTGATTCTCA
GTACAAGCAAAATTATATGTTCATTGTCTGTAAAATCACCAATCAAAGAT
TAAAAAGTAGCACTTACAGAAAAGATGAAAAAGAAACAATGATAAAAACA
AGAATGCAATGCCTCCACCAACAACAAAATTTTGATTAGGAAGAGGCAAT
CCAATGACATCCAATTGGTGTATATTCTCCGAATGGGCAGATCTGCAACT
ATTTAATGTAATGGTACGAATTCCATGTTTAACACTGCGTTAATATCTCA
GCACCGTCCCTGGTAATAAGAATAGTGTGCTCAAATTGTGCTGACAGGCT
CCCGTCTTCTGTAACAATTGTCCAGTTGTCATCCCACATAACAGGATTTA
TGCTACCTATTGTCAGCATCGGTTCTATGGTGAAAGTTTGATTCAACACC
ATGCGTCCATGATCATTGTTCCTATAGTGTAAAACAACAGGATCCGCATG
GAAAACACGTCCAATCCCATGGCCAACGAATTGTCGAACAACGCCATAAT
TATATCTATCTGCATGGTCCTGAATGGTTTTGCCAATTTTCTTGTACTCC
ATTCCCGGTGCACATACCGATATAGCTTTATGTAGACAATCTTTGGTTAC
CTTCACCAGATTTCTGGCTTCATCATCAACATCTCCACAAAAGAAAGTCG
CTGATGTATCACCATGATAACCATTTAGATAAACAGTCACATCAATATTT
ATAGTATCACCATCCTCAAGTGCACGGGAATCCGGTATTCCGTGGCAGAT
ACATTCATTCACTGATGTACAGACACTCTTTGGAAACCCACCATAGCCAA
GAGGTGAGGGATATGCTCCATTATCAATAATCATTTGATGAACTGCTTTG
TCAATTTCATCTGTTGTAATACCTGGCTTAACTA
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